Strain Fitness in Variovorax sp. OAS795 around ABID97_RS06505

Experiment: L-Leucine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS06495 and ABID97_RS06500 are separated by 22 nucleotidesABID97_RS06500 and ABID97_RS06505 are separated by 46 nucleotidesABID97_RS06505 and ABID97_RS06510 are separated by 116 nucleotidesABID97_RS06510 and ABID97_RS06515 are separated by 8 nucleotides ABID97_RS06495: ABID97_RS06495 - histidine phosphatase family protein, at 1,376,292 to 1,376,933 _RS06495 ABID97_RS06500: ABID97_RS06500 - DUF4136 domain-containing protein, at 1,376,956 to 1,377,579 _RS06500 ABID97_RS06505: ABID97_RS06505 - tRNA 2-thiocytidine(32) synthetase TtcA, at 1,377,626 to 1,378,501 _RS06505 ABID97_RS06510: ABID97_RS06510 - dihydroneopterin aldolase, at 1,378,618 to 1,378,992 _RS06510 ABID97_RS06515: ABID97_RS06515 - SDR family oxidoreductase, at 1,379,001 to 1,379,789 _RS06515 Position (kb) 1377 1378 1379Strain fitness (log2 ratio) -2 -1 0 1at 1376.770 kb on + strand, within ABID97_RS06495at 1376.770 kb on + strand, within ABID97_RS06495at 1376.770 kb on + strand, within ABID97_RS06495at 1376.770 kb on + strand, within ABID97_RS06495at 1376.770 kb on + strand, within ABID97_RS06495at 1376.771 kb on - strand, within ABID97_RS06495at 1376.946 kb on + strandat 1376.947 kb on - strandat 1376.947 kb on - strandat 1377.074 kb on + strand, within ABID97_RS06500at 1377.075 kb on - strand, within ABID97_RS06500at 1377.075 kb on - strand, within ABID97_RS06500at 1377.105 kb on - strand, within ABID97_RS06500at 1377.105 kb on - strand, within ABID97_RS06500at 1377.105 kb on - strand, within ABID97_RS06500at 1377.158 kb on + strand, within ABID97_RS06500at 1377.335 kb on + strand, within ABID97_RS06500at 1377.336 kb on - strand, within ABID97_RS06500at 1377.455 kb on + strand, within ABID97_RS06500at 1377.455 kb on + strand, within ABID97_RS06500at 1377.455 kb on + strand, within ABID97_RS06500at 1377.456 kb on - strand, within ABID97_RS06500at 1377.456 kb on - strand, within ABID97_RS06500at 1377.957 kb on + strand, within ABID97_RS06505at 1377.958 kb on - strand, within ABID97_RS06505at 1377.958 kb on - strand, within ABID97_RS06505at 1378.126 kb on - strand, within ABID97_RS06505at 1378.203 kb on + strand, within ABID97_RS06505at 1378.203 kb on + strand, within ABID97_RS06505at 1378.203 kb on + strand, within ABID97_RS06505at 1378.203 kb on + strand, within ABID97_RS06505at 1378.204 kb on - strand, within ABID97_RS06505at 1378.204 kb on - strand, within ABID97_RS06505at 1378.204 kb on - strand, within ABID97_RS06505at 1378.204 kb on - strand, within ABID97_RS06505at 1378.204 kb on - strand, within ABID97_RS06505at 1378.204 kb on - strand, within ABID97_RS06505at 1378.251 kb on + strand, within ABID97_RS06505at 1378.368 kb on + strand, within ABID97_RS06505at 1378.368 kb on + strand, within ABID97_RS06505at 1378.368 kb on + strand, within ABID97_RS06505at 1378.368 kb on + strand, within ABID97_RS06505at 1378.369 kb on - strand, within ABID97_RS06505at 1378.428 kb on + strandat 1378.429 kb on - strandat 1379.296 kb on + strand, within ABID97_RS06515at 1379.296 kb on + strand, within ABID97_RS06515at 1379.296 kb on + strand, within ABID97_RS06515at 1379.297 kb on - strand, within ABID97_RS06515at 1379.452 kb on + strand, within ABID97_RS06515at 1379.452 kb on + strand, within ABID97_RS06515at 1379.452 kb on + strand, within ABID97_RS06515at 1379.452 kb on + strand, within ABID97_RS06515at 1379.452 kb on + strand, within ABID97_RS06515at 1379.453 kb on - strand, within ABID97_RS06515at 1379.453 kb on - strand, within ABID97_RS06515at 1379.453 kb on - strand, within ABID97_RS06515at 1379.453 kb on - strand, within ABID97_RS06515

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
remove
1,376,770 + ABID97_RS06495 0.74 +0.3
1,376,770 + ABID97_RS06495 0.74 +0.2
1,376,770 + ABID97_RS06495 0.74 -0.3
1,376,770 + ABID97_RS06495 0.74 +0.2
1,376,770 + ABID97_RS06495 0.74 -0.8
1,376,771 - ABID97_RS06495 0.75 +0.4
1,376,946 + -0.3
1,376,947 - -0.1
1,376,947 - -1.1
1,377,074 + ABID97_RS06500 0.19 +0.3
1,377,075 - ABID97_RS06500 0.19 -0.1
1,377,075 - ABID97_RS06500 0.19 -0.2
1,377,105 - ABID97_RS06500 0.24 +0.0
1,377,105 - ABID97_RS06500 0.24 +0.0
1,377,105 - ABID97_RS06500 0.24 -0.7
1,377,158 + ABID97_RS06500 0.32 +0.3
1,377,335 + ABID97_RS06500 0.61 -0.3
1,377,336 - ABID97_RS06500 0.61 +1.0
1,377,455 + ABID97_RS06500 0.80 +0.0
1,377,455 + ABID97_RS06500 0.80 +0.1
1,377,455 + ABID97_RS06500 0.80 +0.0
1,377,456 - ABID97_RS06500 0.80 +0.6
1,377,456 - ABID97_RS06500 0.80 -0.1
1,377,957 + ABID97_RS06505 0.38 +1.3
1,377,958 - ABID97_RS06505 0.38 +0.9
1,377,958 - ABID97_RS06505 0.38 -0.0
1,378,126 - ABID97_RS06505 0.57 -0.8
1,378,203 + ABID97_RS06505 0.66 -0.8
1,378,203 + ABID97_RS06505 0.66 -0.0
1,378,203 + ABID97_RS06505 0.66 -0.2
1,378,203 + ABID97_RS06505 0.66 +0.0
1,378,204 - ABID97_RS06505 0.66 -0.4
1,378,204 - ABID97_RS06505 0.66 +0.6
1,378,204 - ABID97_RS06505 0.66 -0.2
1,378,204 - ABID97_RS06505 0.66 -0.6
1,378,204 - ABID97_RS06505 0.66 -0.4
1,378,204 - ABID97_RS06505 0.66 +0.1
1,378,251 + ABID97_RS06505 0.71 -0.5
1,378,368 + ABID97_RS06505 0.85 -0.4
1,378,368 + ABID97_RS06505 0.85 -0.2
1,378,368 + ABID97_RS06505 0.85 -1.3
1,378,368 + ABID97_RS06505 0.85 +0.9
1,378,369 - ABID97_RS06505 0.85 -0.5
1,378,428 + -0.3
1,378,429 - -0.4
1,379,296 + ABID97_RS06515 0.37 +0.4
1,379,296 + ABID97_RS06515 0.37 -2.1
1,379,296 + ABID97_RS06515 0.37 -0.4
1,379,297 - ABID97_RS06515 0.38 +0.2
1,379,452 + ABID97_RS06515 0.57 -0.1
1,379,452 + ABID97_RS06515 0.57 +1.3
1,379,452 + ABID97_RS06515 0.57 +0.1
1,379,452 + ABID97_RS06515 0.57 +0.6
1,379,452 + ABID97_RS06515 0.57 -0.0
1,379,453 - ABID97_RS06515 0.57 +0.5
1,379,453 - ABID97_RS06515 0.57 -0.2
1,379,453 - ABID97_RS06515 0.57 +0.3
1,379,453 - ABID97_RS06515 0.57 +0.2

Or see this region's nucleotide sequence