Strain Fitness in Variovorax sp. OAS795 around ABID97_RS06190

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS06185 and ABID97_RS06190 are separated by 269 nucleotidesABID97_RS06190 and ABID97_RS06195 are separated by 8 nucleotidesABID97_RS06195 and ABID97_RS06200 are separated by 1 nucleotides ABID97_RS06185: ABID97_RS06185 - ATP-dependent protease ATPase subunit HslU, at 1,304,817 to 1,306,145 _RS06185 ABID97_RS06190: ABID97_RS06190 - division/cell wall cluster transcriptional repressor MraZ, at 1,306,415 to 1,306,843 _RS06190 ABID97_RS06195: ABID97_RS06195 - 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH, at 1,306,852 to 1,307,775 _RS06195 ABID97_RS06200: ABID97_RS06200 - cell division protein FtsL, at 1,307,777 to 1,308,124 _RS06200 Position (kb) 1306 1307Strain fitness (log2 ratio) -2 -1 0 1at 1305.693 kb on + strand, within ABID97_RS06185at 1305.694 kb on - strand, within ABID97_RS06185at 1305.694 kb on - strand, within ABID97_RS06185at 1305.703 kb on + strand, within ABID97_RS06185at 1305.704 kb on - strand, within ABID97_RS06185at 1305.876 kb on + strand, within ABID97_RS06185at 1305.876 kb on + strand, within ABID97_RS06185at 1305.876 kb on + strand, within ABID97_RS06185at 1306.030 kb on + strandat 1306.030 kb on + strandat 1306.031 kb on - strandat 1306.031 kb on - strandat 1306.031 kb on - strandat 1306.071 kb on - strandat 1306.083 kb on + strandat 1306.083 kb on + strandat 1306.083 kb on + strandat 1306.083 kb on + strandat 1306.084 kb on - strandat 1306.084 kb on - strandat 1306.108 kb on + strandat 1306.109 kb on - strandat 1306.629 kb on + strand, within ABID97_RS06190at 1306.775 kb on + strand, within ABID97_RS06190at 1306.775 kb on + strand, within ABID97_RS06190at 1306.775 kb on + strand, within ABID97_RS06190at 1306.775 kb on + strand, within ABID97_RS06190at 1307.629 kb on + strand, within ABID97_RS06195

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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1,305,693 + ABID97_RS06185 0.66 -1.1
1,305,694 - ABID97_RS06185 0.66 -0.4
1,305,694 - ABID97_RS06185 0.66 -0.7
1,305,703 + ABID97_RS06185 0.67 -0.6
1,305,704 - ABID97_RS06185 0.67 -0.6
1,305,876 + ABID97_RS06185 0.80 -0.7
1,305,876 + ABID97_RS06185 0.80 -1.0
1,305,876 + ABID97_RS06185 0.80 +1.4
1,306,030 + -0.4
1,306,030 + -1.7
1,306,031 - -0.7
1,306,031 - +0.7
1,306,031 - -0.6
1,306,071 - -0.2
1,306,083 + -0.6
1,306,083 + -0.3
1,306,083 + -1.0
1,306,083 + -0.9
1,306,084 - -0.5
1,306,084 - -2.0
1,306,108 + +0.7
1,306,109 - -0.7
1,306,629 + ABID97_RS06190 0.50 -0.9
1,306,775 + ABID97_RS06190 0.84 -1.7
1,306,775 + ABID97_RS06190 0.84 -1.9
1,306,775 + ABID97_RS06190 0.84 -1.7
1,306,775 + ABID97_RS06190 0.84 -1.2
1,307,629 + ABID97_RS06195 0.84 +1.7

Or see this region's nucleotide sequence