Strain Fitness in Variovorax sp. OAS795 around ABID97_RS05820

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS05815 and ABID97_RS05820 are separated by 43 nucleotidesABID97_RS05820 and ABID97_RS05825 are separated by 129 nucleotidesABID97_RS05825 and ABID97_RS05830 overlap by 4 nucleotides ABID97_RS05815: ABID97_RS05815 - sialic acid TRAP transporter substrate-binding protein SiaP, at 1,229,779 to 1,230,774 _RS05815 ABID97_RS05820: ABID97_RS05820 - FadR/GntR family transcriptional regulator, at 1,230,818 to 1,231,525 _RS05820 ABID97_RS05825: ABID97_RS05825 - SDR family oxidoreductase, at 1,231,655 to 1,232,389 _RS05825 ABID97_RS05830: ABID97_RS05830 - SDR family NAD(P)-dependent oxidoreductase, at 1,232,386 to 1,233,132 _RS05830 Position (kb) 1230 1231 1232Strain fitness (log2 ratio) -2 -1 0 1 2at 1230.167 kb on + strand, within ABID97_RS05815at 1230.168 kb on - strand, within ABID97_RS05815at 1230.168 kb on - strand, within ABID97_RS05815at 1230.228 kb on - strand, within ABID97_RS05815at 1230.365 kb on + strand, within ABID97_RS05815at 1230.404 kb on + strand, within ABID97_RS05815at 1230.446 kb on + strand, within ABID97_RS05815at 1230.446 kb on + strand, within ABID97_RS05815at 1230.468 kb on - strand, within ABID97_RS05815at 1230.468 kb on - strand, within ABID97_RS05815at 1230.584 kb on + strand, within ABID97_RS05815at 1230.584 kb on + strand, within ABID97_RS05815at 1230.585 kb on - strand, within ABID97_RS05815at 1230.585 kb on - strand, within ABID97_RS05815at 1230.632 kb on + strand, within ABID97_RS05815at 1230.633 kb on - strand, within ABID97_RS05815at 1230.659 kb on + strand, within ABID97_RS05815at 1230.985 kb on - strand, within ABID97_RS05820at 1231.308 kb on + strand, within ABID97_RS05820at 1231.309 kb on - strand, within ABID97_RS05820at 1231.309 kb on - strand, within ABID97_RS05820at 1231.309 kb on - strand, within ABID97_RS05820at 1231.583 kb on + strandat 1231.583 kb on + strandat 1231.583 kb on + strandat 1231.584 kb on - strandat 1231.643 kb on + strandat 1232.144 kb on + strand, within ABID97_RS05825at 1232.144 kb on + strand, within ABID97_RS05825at 1232.144 kb on + strand, within ABID97_RS05825at 1232.145 kb on - strand, within ABID97_RS05825at 1232.384 kb on + strandat 1232.386 kb on - strandat 1232.386 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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1,230,167 + ABID97_RS05815 0.39 -0.5
1,230,168 - ABID97_RS05815 0.39 +0.9
1,230,168 - ABID97_RS05815 0.39 +0.6
1,230,228 - ABID97_RS05815 0.45 +1.1
1,230,365 + ABID97_RS05815 0.59 +0.1
1,230,404 + ABID97_RS05815 0.63 -0.8
1,230,446 + ABID97_RS05815 0.67 +0.1
1,230,446 + ABID97_RS05815 0.67 +2.5
1,230,468 - ABID97_RS05815 0.69 -0.2
1,230,468 - ABID97_RS05815 0.69 -0.1
1,230,584 + ABID97_RS05815 0.81 +0.3
1,230,584 + ABID97_RS05815 0.81 -0.1
1,230,585 - ABID97_RS05815 0.81 +0.3
1,230,585 - ABID97_RS05815 0.81 -0.4
1,230,632 + ABID97_RS05815 0.86 +0.0
1,230,633 - ABID97_RS05815 0.86 +0.3
1,230,659 + ABID97_RS05815 0.88 -0.1
1,230,985 - ABID97_RS05820 0.24 -1.4
1,231,308 + ABID97_RS05820 0.69 +0.7
1,231,309 - ABID97_RS05820 0.69 +0.9
1,231,309 - ABID97_RS05820 0.69 -1.3
1,231,309 - ABID97_RS05820 0.69 -1.1
1,231,583 + -0.3
1,231,583 + -0.7
1,231,583 + +0.7
1,231,584 - -0.5
1,231,643 + +0.5
1,232,144 + ABID97_RS05825 0.67 +0.3
1,232,144 + ABID97_RS05825 0.67 -0.3
1,232,144 + ABID97_RS05825 0.67 -0.1
1,232,145 - ABID97_RS05825 0.67 +2.7
1,232,384 + +1.9
1,232,386 - +1.1
1,232,386 - -2.1

Or see this region's nucleotide sequence