Strain Fitness in Variovorax sp. OAS795 around ABID97_RS05370

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS05360 and ABID97_RS05365 overlap by 20 nucleotidesABID97_RS05365 and ABID97_RS05370 overlap by 4 nucleotidesABID97_RS05370 and ABID97_RS05375 are separated by 90 nucleotidesABID97_RS05375 and ABID97_RS05380 are separated by 18 nucleotides ABID97_RS05360: ABID97_RS05360 - 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB, at 1,122,786 to 1,124,162 _RS05360 ABID97_RS05365: ABID97_RS05365 - DUF4390 domain-containing protein, at 1,124,143 to 1,124,790 _RS05365 ABID97_RS05370: ABID97_RS05370 - ATP-binding protein, at 1,124,787 to 1,127,117 _RS05370 ABID97_RS05375: ABID97_RS05375 - response regulator, at 1,127,208 to 1,127,909 _RS05375 ABID97_RS05380: ABID97_RS05380 - tRNA-Phe, at 1,127,928 to 1,128,003 _RS05380 Position (kb) 1124 1125 1126 1127 1128Strain fitness (log2 ratio) -2 -1 0 1at 1123.962 kb on + strand, within ABID97_RS05360at 1123.962 kb on + strand, within ABID97_RS05360at 1123.962 kb on + strand, within ABID97_RS05360at 1123.962 kb on + strand, within ABID97_RS05360at 1123.963 kb on - strand, within ABID97_RS05360at 1123.963 kb on - strand, within ABID97_RS05360at 1123.963 kb on - strand, within ABID97_RS05360at 1124.314 kb on + strand, within ABID97_RS05365at 1124.314 kb on + strand, within ABID97_RS05365at 1124.314 kb on + strand, within ABID97_RS05365at 1124.315 kb on - strand, within ABID97_RS05365at 1124.386 kb on + strand, within ABID97_RS05365at 1124.386 kb on + strand, within ABID97_RS05365at 1124.386 kb on + strand, within ABID97_RS05365at 1124.386 kb on + strand, within ABID97_RS05365at 1124.387 kb on - strand, within ABID97_RS05365at 1124.387 kb on - strand, within ABID97_RS05365at 1124.387 kb on - strand, within ABID97_RS05365at 1124.425 kb on + strand, within ABID97_RS05365at 1124.425 kb on + strand, within ABID97_RS05365at 1124.476 kb on + strand, within ABID97_RS05365at 1124.943 kb on + strandat 1124.952 kb on + strandat 1124.955 kb on + strandat 1124.955 kb on + strandat 1124.955 kb on + strandat 1124.955 kb on + strandat 1124.955 kb on + strandat 1124.955 kb on + strandat 1124.955 kb on + strandat 1124.955 kb on + strandat 1124.955 kb on + strandat 1124.955 kb on + strandat 1124.955 kb on + strandat 1125.130 kb on - strand, within ABID97_RS05370at 1125.130 kb on - strand, within ABID97_RS05370at 1125.130 kb on - strand, within ABID97_RS05370at 1125.141 kb on + strand, within ABID97_RS05370at 1125.142 kb on - strand, within ABID97_RS05370at 1125.142 kb on - strand, within ABID97_RS05370at 1125.142 kb on - strand, within ABID97_RS05370at 1125.711 kb on + strand, within ABID97_RS05370at 1125.711 kb on + strand, within ABID97_RS05370at 1125.711 kb on + strand, within ABID97_RS05370at 1125.711 kb on + strand, within ABID97_RS05370at 1125.711 kb on + strand, within ABID97_RS05370at 1125.711 kb on + strand, within ABID97_RS05370at 1125.712 kb on - strand, within ABID97_RS05370at 1125.712 kb on - strand, within ABID97_RS05370at 1125.712 kb on - strand, within ABID97_RS05370at 1125.712 kb on - strand, within ABID97_RS05370at 1125.712 kb on - strand, within ABID97_RS05370at 1125.712 kb on - strand, within ABID97_RS05370at 1126.101 kb on + strand, within ABID97_RS05370at 1126.102 kb on - strand, within ABID97_RS05370at 1126.102 kb on - strand, within ABID97_RS05370at 1126.499 kb on + strand, within ABID97_RS05370at 1126.499 kb on + strand, within ABID97_RS05370at 1126.566 kb on + strand, within ABID97_RS05370at 1126.566 kb on + strand, within ABID97_RS05370at 1126.566 kb on + strand, within ABID97_RS05370at 1126.567 kb on - strand, within ABID97_RS05370at 1126.567 kb on - strand, within ABID97_RS05370at 1126.911 kb on + strandat 1127.151 kb on + strandat 1127.166 kb on + strandat 1127.166 kb on + strandat 1127.167 kb on - strandat 1127.167 kb on - strandat 1127.167 kb on - strandat 1127.182 kb on - strandat 1127.182 kb on - strandat 1128.115 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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1,123,962 + ABID97_RS05360 0.85 +0.4
1,123,962 + ABID97_RS05360 0.85 +1.3
1,123,962 + ABID97_RS05360 0.85 -0.2
1,123,962 + ABID97_RS05360 0.85 +0.0
1,123,963 - ABID97_RS05360 0.85 +0.1
1,123,963 - ABID97_RS05360 0.85 -0.2
1,123,963 - ABID97_RS05360 0.85 -0.6
1,124,314 + ABID97_RS05365 0.26 -0.5
1,124,314 + ABID97_RS05365 0.26 -2.0
1,124,314 + ABID97_RS05365 0.26 -0.9
1,124,315 - ABID97_RS05365 0.27 -1.8
1,124,386 + ABID97_RS05365 0.38 -1.1
1,124,386 + ABID97_RS05365 0.38 -0.9
1,124,386 + ABID97_RS05365 0.38 -0.6
1,124,386 + ABID97_RS05365 0.38 -1.9
1,124,387 - ABID97_RS05365 0.38 -0.3
1,124,387 - ABID97_RS05365 0.38 -0.9
1,124,387 - ABID97_RS05365 0.38 -1.5
1,124,425 + ABID97_RS05365 0.44 -0.0
1,124,425 + ABID97_RS05365 0.44 -2.1
1,124,476 + ABID97_RS05365 0.51 -2.7
1,124,943 + -0.9
1,124,952 + -1.0
1,124,955 + -0.6
1,124,955 + -0.8
1,124,955 + +1.5
1,124,955 + -0.2
1,124,955 + -1.9
1,124,955 + -1.2
1,124,955 + -0.5
1,124,955 + -1.2
1,124,955 + -1.5
1,124,955 + +0.2
1,124,955 + +0.1
1,125,130 - ABID97_RS05370 0.15 -2.4
1,125,130 - ABID97_RS05370 0.15 -1.1
1,125,130 - ABID97_RS05370 0.15 -0.3
1,125,141 + ABID97_RS05370 0.15 -0.5
1,125,142 - ABID97_RS05370 0.15 -0.9
1,125,142 - ABID97_RS05370 0.15 -1.1
1,125,142 - ABID97_RS05370 0.15 -0.6
1,125,711 + ABID97_RS05370 0.40 -2.0
1,125,711 + ABID97_RS05370 0.40 -2.5
1,125,711 + ABID97_RS05370 0.40 -1.5
1,125,711 + ABID97_RS05370 0.40 -0.5
1,125,711 + ABID97_RS05370 0.40 -1.1
1,125,711 + ABID97_RS05370 0.40 -0.3
1,125,712 - ABID97_RS05370 0.40 -0.9
1,125,712 - ABID97_RS05370 0.40 -2.5
1,125,712 - ABID97_RS05370 0.40 +0.1
1,125,712 - ABID97_RS05370 0.40 -0.9
1,125,712 - ABID97_RS05370 0.40 -0.6
1,125,712 - ABID97_RS05370 0.40 -0.3
1,126,101 + ABID97_RS05370 0.56 -2.7
1,126,102 - ABID97_RS05370 0.56 -2.6
1,126,102 - ABID97_RS05370 0.56 -0.9
1,126,499 + ABID97_RS05370 0.73 -2.2
1,126,499 + ABID97_RS05370 0.73 -1.2
1,126,566 + ABID97_RS05370 0.76 -0.3
1,126,566 + ABID97_RS05370 0.76 -0.3
1,126,566 + ABID97_RS05370 0.76 -1.6
1,126,567 - ABID97_RS05370 0.76 -0.3
1,126,567 - ABID97_RS05370 0.76 -2.1
1,126,911 + -0.6
1,127,151 + -0.4
1,127,166 + -0.4
1,127,166 + +0.2
1,127,167 - +0.1
1,127,167 - -0.1
1,127,167 - +0.2
1,127,182 - +0.3
1,127,182 - -1.1
1,128,115 + -2.2

Or see this region's nucleotide sequence