Strain Fitness in Variovorax sp. OAS795 around ABID97_RS05280

Experiment: L-Leucine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS05275 and ABID97_RS05280 are separated by 29 nucleotidesABID97_RS05280 and ABID97_RS05285 overlap by 4 nucleotidesABID97_RS05285 and ABID97_RS05290 are separated by 106 nucleotidesABID97_RS05290 and ABID97_RS05295 are separated by 64 nucleotides ABID97_RS05275: ABID97_RS05275 - anthranilate phosphoribosyltransferase, at 1,105,297 to 1,106,319 _RS05275 ABID97_RS05280: ABID97_RS05280 - indole-3-glycerol phosphate synthase TrpC, at 1,106,349 to 1,107,149 _RS05280 ABID97_RS05285: ABID97_RS05285 - uracil-DNA glycosylase, at 1,107,146 to 1,107,853 _RS05285 ABID97_RS05290: ABID97_RS05290 - tRNA-Tyr, at 1,107,960 to 1,108,045 _RS05290 ABID97_RS05295: ABID97_RS05295 - tRNA-Gly, at 1,108,110 to 1,108,183 _RS05295 Position (kb) 1106 1107 1108Strain fitness (log2 ratio) -2 -1 0 1at 1105.960 kb on + strand, within ABID97_RS05275at 1105.961 kb on - strand, within ABID97_RS05275at 1106.200 kb on + strand, within ABID97_RS05275at 1106.201 kb on - strand, within ABID97_RS05275at 1106.595 kb on + strand, within ABID97_RS05280at 1106.596 kb on - strand, within ABID97_RS05280at 1106.596 kb on - strand, within ABID97_RS05280at 1106.596 kb on - strand, within ABID97_RS05280at 1106.742 kb on + strand, within ABID97_RS05280at 1106.827 kb on - strand, within ABID97_RS05280at 1107.645 kb on + strand, within ABID97_RS05285at 1107.645 kb on + strand, within ABID97_RS05285at 1107.645 kb on + strand, within ABID97_RS05285at 1107.645 kb on + strand, within ABID97_RS05285at 1107.645 kb on + strand, within ABID97_RS05285at 1107.645 kb on + strand, within ABID97_RS05285at 1107.700 kb on + strand, within ABID97_RS05285at 1107.701 kb on - strand, within ABID97_RS05285at 1107.730 kb on + strand, within ABID97_RS05285at 1107.731 kb on - strand, within ABID97_RS05285at 1107.863 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
remove
1,105,960 + ABID97_RS05275 0.65 -2.1
1,105,961 - ABID97_RS05275 0.65 -0.6
1,106,200 + ABID97_RS05275 0.88 +0.1
1,106,201 - ABID97_RS05275 0.88 -1.8
1,106,595 + ABID97_RS05280 0.31 -1.3
1,106,596 - ABID97_RS05280 0.31 -0.6
1,106,596 - ABID97_RS05280 0.31 +0.1
1,106,596 - ABID97_RS05280 0.31 -1.8
1,106,742 + ABID97_RS05280 0.49 -1.5
1,106,827 - ABID97_RS05280 0.60 +0.1
1,107,645 + ABID97_RS05285 0.70 +0.3
1,107,645 + ABID97_RS05285 0.70 -1.2
1,107,645 + ABID97_RS05285 0.70 -0.1
1,107,645 + ABID97_RS05285 0.70 +0.2
1,107,645 + ABID97_RS05285 0.70 -0.2
1,107,645 + ABID97_RS05285 0.70 +0.5
1,107,700 + ABID97_RS05285 0.78 -0.0
1,107,701 - ABID97_RS05285 0.78 -1.0
1,107,730 + ABID97_RS05285 0.82 +0.0
1,107,731 - ABID97_RS05285 0.83 -0.9
1,107,863 + -0.1

Or see this region's nucleotide sequence