Strain Fitness in Variovorax sp. OAS795 around ABID97_RS04185

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS04180 and ABID97_RS04185 are separated by 78 nucleotidesABID97_RS04185 and ABID97_RS04190 overlap by 4 nucleotides ABID97_RS04180: ABID97_RS04180 - glycerophosphodiester phosphodiesterase, at 859,691 to 860,885 _RS04180 ABID97_RS04185: ABID97_RS04185 - M20 aminoacylase family protein, at 860,964 to 862,166 _RS04185 ABID97_RS04190: ABID97_RS04190 - M14 family metallopeptidase, at 862,163 to 863,257 _RS04190 Position (kb) 860 861 862 863Strain fitness (log2 ratio) -1 0 1at 860.210 kb on + strand, within ABID97_RS04180at 860.210 kb on + strand, within ABID97_RS04180at 860.234 kb on + strand, within ABID97_RS04180at 860.235 kb on - strand, within ABID97_RS04180at 860.321 kb on + strand, within ABID97_RS04180at 860.321 kb on + strand, within ABID97_RS04180at 860.321 kb on + strand, within ABID97_RS04180at 860.321 kb on + strand, within ABID97_RS04180at 860.322 kb on - strand, within ABID97_RS04180at 860.322 kb on - strand, within ABID97_RS04180at 860.322 kb on - strand, within ABID97_RS04180at 860.322 kb on - strand, within ABID97_RS04180at 860.354 kb on + strand, within ABID97_RS04180at 860.354 kb on + strand, within ABID97_RS04180at 860.354 kb on + strand, within ABID97_RS04180at 860.354 kb on + strand, within ABID97_RS04180at 860.354 kb on + strand, within ABID97_RS04180at 860.354 kb on + strand, within ABID97_RS04180at 860.354 kb on + strand, within ABID97_RS04180at 860.355 kb on - strand, within ABID97_RS04180at 860.355 kb on - strand, within ABID97_RS04180at 860.355 kb on - strand, within ABID97_RS04180at 860.355 kb on - strand, within ABID97_RS04180at 860.355 kb on - strand, within ABID97_RS04180at 860.355 kb on - strand, within ABID97_RS04180at 860.355 kb on - strand, within ABID97_RS04180at 860.355 kb on - strand, within ABID97_RS04180at 860.542 kb on - strand, within ABID97_RS04180at 860.572 kb on - strand, within ABID97_RS04180at 860.572 kb on - strand, within ABID97_RS04180at 860.760 kb on + strand, within ABID97_RS04180at 860.785 kb on - strandat 860.793 kb on + strandat 860.793 kb on + strandat 860.793 kb on + strandat 860.794 kb on - strandat 860.796 kb on + strandat 860.797 kb on - strandat 860.797 kb on - strandat 860.863 kb on - strandat 861.345 kb on + strand, within ABID97_RS04185at 861.345 kb on + strand, within ABID97_RS04185at 861.346 kb on - strand, within ABID97_RS04185at 861.843 kb on + strand, within ABID97_RS04185at 861.844 kb on - strand, within ABID97_RS04185at 861.993 kb on + strand, within ABID97_RS04185at 862.463 kb on + strand, within ABID97_RS04190at 862.463 kb on + strand, within ABID97_RS04190at 862.463 kb on + strand, within ABID97_RS04190at 862.463 kb on + strand, within ABID97_RS04190at 862.463 kb on + strand, within ABID97_RS04190at 862.463 kb on + strand, within ABID97_RS04190at 862.463 kb on + strand, within ABID97_RS04190at 862.463 kb on + strand, within ABID97_RS04190at 862.464 kb on - strand, within ABID97_RS04190at 862.464 kb on - strand, within ABID97_RS04190at 862.464 kb on - strand, within ABID97_RS04190at 862.464 kb on - strand, within ABID97_RS04190at 862.464 kb on - strand, within ABID97_RS04190at 862.464 kb on - strand, within ABID97_RS04190at 862.464 kb on - strand, within ABID97_RS04190at 862.464 kb on - strand, within ABID97_RS04190at 862.496 kb on + strand, within ABID97_RS04190at 862.497 kb on - strand, within ABID97_RS04190at 862.580 kb on + strand, within ABID97_RS04190at 862.709 kb on + strand, within ABID97_RS04190at 862.710 kb on - strand, within ABID97_RS04190at 862.949 kb on + strand, within ABID97_RS04190at 862.949 kb on + strand, within ABID97_RS04190at 862.949 kb on + strand, within ABID97_RS04190at 862.949 kb on + strand, within ABID97_RS04190at 862.950 kb on - strand, within ABID97_RS04190at 862.950 kb on - strand, within ABID97_RS04190at 863.003 kb on + strand, within ABID97_RS04190at 863.028 kb on - strand, within ABID97_RS04190at 863.028 kb on - strand, within ABID97_RS04190

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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860,210 + ABID97_RS04180 0.43 -0.3
860,210 + ABID97_RS04180 0.43 -0.1
860,234 + ABID97_RS04180 0.45 -0.2
860,235 - ABID97_RS04180 0.46 +0.2
860,321 + ABID97_RS04180 0.53 -0.0
860,321 + ABID97_RS04180 0.53 -0.9
860,321 + ABID97_RS04180 0.53 +0.3
860,321 + ABID97_RS04180 0.53 +0.0
860,322 - ABID97_RS04180 0.53 +0.4
860,322 - ABID97_RS04180 0.53 +1.7
860,322 - ABID97_RS04180 0.53 -0.3
860,322 - ABID97_RS04180 0.53 -1.3
860,354 + ABID97_RS04180 0.55 -0.3
860,354 + ABID97_RS04180 0.55 -0.6
860,354 + ABID97_RS04180 0.55 -0.3
860,354 + ABID97_RS04180 0.55 -0.2
860,354 + ABID97_RS04180 0.55 -0.5
860,354 + ABID97_RS04180 0.55 -0.3
860,354 + ABID97_RS04180 0.55 -0.4
860,355 - ABID97_RS04180 0.56 -0.5
860,355 - ABID97_RS04180 0.56 -0.1
860,355 - ABID97_RS04180 0.56 +0.2
860,355 - ABID97_RS04180 0.56 -0.0
860,355 - ABID97_RS04180 0.56 -0.2
860,355 - ABID97_RS04180 0.56 -0.7
860,355 - ABID97_RS04180 0.56 -0.4
860,355 - ABID97_RS04180 0.56 -0.1
860,542 - ABID97_RS04180 0.71 -0.1
860,572 - ABID97_RS04180 0.74 -0.0
860,572 - ABID97_RS04180 0.74 +0.0
860,760 + ABID97_RS04180 0.89 +1.7
860,785 - +0.1
860,793 + +0.0
860,793 + +0.0
860,793 + +0.1
860,794 - +0.1
860,796 + +0.0
860,797 - -0.5
860,797 - +0.2
860,863 - -0.1
861,345 + ABID97_RS04185 0.32 -0.4
861,345 + ABID97_RS04185 0.32 -0.4
861,346 - ABID97_RS04185 0.32 -0.5
861,843 + ABID97_RS04185 0.73 -0.2
861,844 - ABID97_RS04185 0.73 +0.3
861,993 + ABID97_RS04185 0.86 -0.2
862,463 + ABID97_RS04190 0.27 -1.2
862,463 + ABID97_RS04190 0.27 +0.0
862,463 + ABID97_RS04190 0.27 -0.5
862,463 + ABID97_RS04190 0.27 -0.0
862,463 + ABID97_RS04190 0.27 -0.3
862,463 + ABID97_RS04190 0.27 -0.1
862,463 + ABID97_RS04190 0.27 -0.8
862,463 + ABID97_RS04190 0.27 +0.2
862,464 - ABID97_RS04190 0.27 -0.7
862,464 - ABID97_RS04190 0.27 +0.2
862,464 - ABID97_RS04190 0.27 -1.7
862,464 - ABID97_RS04190 0.27 +0.3
862,464 - ABID97_RS04190 0.27 -0.0
862,464 - ABID97_RS04190 0.27 +1.1
862,464 - ABID97_RS04190 0.27 +0.6
862,464 - ABID97_RS04190 0.27 -0.0
862,496 + ABID97_RS04190 0.30 -1.3
862,497 - ABID97_RS04190 0.31 +0.7
862,580 + ABID97_RS04190 0.38 +1.7
862,709 + ABID97_RS04190 0.50 -0.1
862,710 - ABID97_RS04190 0.50 +0.6
862,949 + ABID97_RS04190 0.72 +0.1
862,949 + ABID97_RS04190 0.72 +0.1
862,949 + ABID97_RS04190 0.72 +0.1
862,949 + ABID97_RS04190 0.72 -0.3
862,950 - ABID97_RS04190 0.72 +0.4
862,950 - ABID97_RS04190 0.72 -1.4
863,003 + ABID97_RS04190 0.77 +0.7
863,028 - ABID97_RS04190 0.79 +0.4
863,028 - ABID97_RS04190 0.79 -0.4

Or see this region's nucleotide sequence