Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02600

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS02590 and ABID97_RS02595 are separated by 34 nucleotidesABID97_RS02595 and ABID97_RS02600 overlap by 4 nucleotidesABID97_RS02600 and ABID97_RS02605 are separated by 127 nucleotides ABID97_RS02590: ABID97_RS02590 - YigZ family protein, at 530,084 to 530,674 _RS02590 ABID97_RS02595: ABID97_RS02595 - methionine biosynthesis protein MetW, at 530,709 to 531,296 _RS02595 ABID97_RS02600: ABID97_RS02600 - homoserine O-acetyltransferase, at 531,293 to 532,471 _RS02600 ABID97_RS02605: ABID97_RS02605 - TMEM165/GDT1 family protein, at 532,599 to 533,162 _RS02605 Position (kb) 531 532 533Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 530.346 kb on + strand, within ABID97_RS02590at 530.347 kb on - strand, within ABID97_RS02590at 530.391 kb on + strand, within ABID97_RS02590at 531.343 kb on - strandat 531.363 kb on + strandat 531.363 kb on + strandat 531.364 kb on - strandat 531.364 kb on - strandat 531.364 kb on - strandat 531.364 kb on - strandat 531.364 kb on - strandat 531.364 kb on - strandat 531.420 kb on + strand, within ABID97_RS02600at 531.609 kb on + strand, within ABID97_RS02600at 531.609 kb on + strand, within ABID97_RS02600at 531.609 kb on + strand, within ABID97_RS02600at 531.609 kb on + strand, within ABID97_RS02600at 531.609 kb on + strand, within ABID97_RS02600at 531.610 kb on - strand, within ABID97_RS02600at 531.610 kb on - strand, within ABID97_RS02600at 531.610 kb on - strand, within ABID97_RS02600at 531.627 kb on + strand, within ABID97_RS02600at 531.628 kb on - strand, within ABID97_RS02600at 531.628 kb on - strand, within ABID97_RS02600at 531.660 kb on + strand, within ABID97_RS02600at 531.783 kb on + strand, within ABID97_RS02600at 531.784 kb on - strand, within ABID97_RS02600at 531.784 kb on - strand, within ABID97_RS02600at 531.784 kb on - strand, within ABID97_RS02600at 531.784 kb on - strand, within ABID97_RS02600at 531.847 kb on - strand, within ABID97_RS02600at 531.847 kb on - strand, within ABID97_RS02600at 531.975 kb on + strand, within ABID97_RS02600at 532.120 kb on - strand, within ABID97_RS02600at 532.120 kb on - strand, within ABID97_RS02600at 532.120 kb on - strand, within ABID97_RS02600at 532.278 kb on + strand, within ABID97_RS02600at 532.278 kb on + strand, within ABID97_RS02600at 532.278 kb on + strand, within ABID97_RS02600at 532.278 kb on + strand, within ABID97_RS02600at 532.279 kb on - strand, within ABID97_RS02600at 532.279 kb on - strand, within ABID97_RS02600at 532.279 kb on - strand, within ABID97_RS02600at 532.279 kb on - strand, within ABID97_RS02600at 532.359 kb on + strandat 532.359 kb on + strandat 532.360 kb on - strandat 532.381 kb on - strandat 532.381 kb on - strandat 532.381 kb on - strandat 532.530 kb on + strandat 532.530 kb on + strandat 532.540 kb on + strandat 532.540 kb on + strandat 532.541 kb on - strandat 532.541 kb on - strandat 532.542 kb on + strandat 532.542 kb on + strandat 532.542 kb on + strandat 532.543 kb on - strandat 532.543 kb on - strandat 532.561 kb on - strandat 532.583 kb on + strandat 532.583 kb on + strandat 532.583 kb on + strandat 532.583 kb on + strandat 532.583 kb on + strandat 532.583 kb on + strandat 532.583 kb on + strandat 532.583 kb on + strandat 532.583 kb on + strandat 532.583 kb on + strandat 532.584 kb on - strandat 532.584 kb on - strandat 532.584 kb on - strandat 532.584 kb on - strandat 532.584 kb on - strandat 532.584 kb on - strandat 532.584 kb on - strandat 532.584 kb on - strandat 532.584 kb on - strandat 532.584 kb on - strandat 532.584 kb on - strandat 532.584 kb on - strandat 532.584 kb on - strandat 532.584 kb on - strandat 532.585 kb on + strandat 532.585 kb on + strandat 532.585 kb on + strandat 532.585 kb on + strandat 532.586 kb on - strandat 532.586 kb on - strandat 532.600 kb on + strandat 532.762 kb on + strand, within ABID97_RS02605at 532.762 kb on + strand, within ABID97_RS02605at 532.763 kb on - strand, within ABID97_RS02605at 532.763 kb on - strand, within ABID97_RS02605at 532.763 kb on - strand, within ABID97_RS02605at 532.763 kb on - strand, within ABID97_RS02605at 532.763 kb on - strand, within ABID97_RS02605at 532.763 kb on - strand, within ABID97_RS02605at 532.864 kb on + strand, within ABID97_RS02605at 532.864 kb on + strand, within ABID97_RS02605at 532.865 kb on - strand, within ABID97_RS02605at 532.865 kb on - strand, within ABID97_RS02605at 532.990 kb on + strand, within ABID97_RS02605at 532.990 kb on + strand, within ABID97_RS02605at 532.990 kb on + strand, within ABID97_RS02605at 532.990 kb on + strand, within ABID97_RS02605at 532.990 kb on + strand, within ABID97_RS02605at 532.990 kb on + strand, within ABID97_RS02605at 532.990 kb on + strand, within ABID97_RS02605at 532.990 kb on + strand, within ABID97_RS02605at 532.990 kb on + strand, within ABID97_RS02605at 532.990 kb on + strand, within ABID97_RS02605at 532.990 kb on + strand, within ABID97_RS02605at 532.990 kb on + strand, within ABID97_RS02605at 532.990 kb on + strand, within ABID97_RS02605at 532.990 kb on + strand, within ABID97_RS02605at 532.990 kb on + strand, within ABID97_RS02605at 532.991 kb on - strand, within ABID97_RS02605at 532.991 kb on - strand, within ABID97_RS02605at 532.991 kb on - strand, within ABID97_RS02605at 532.991 kb on - strand, within ABID97_RS02605at 532.991 kb on - strand, within ABID97_RS02605at 532.991 kb on - strand, within ABID97_RS02605at 532.991 kb on - strand, within ABID97_RS02605at 533.221 kb on + strandat 533.336 kb on + strandat 533.336 kb on + strandat 533.337 kb on - strandat 533.361 kb on + strandat 533.361 kb on + strandat 533.361 kb on + strandat 533.362 kb on - strandat 533.362 kb on - strandat 533.362 kb on - strandat 533.362 kb on - strandat 533.362 kb on - strandat 533.362 kb on - strandat 533.362 kb on - strandat 533.362 kb on - strandat 533.432 kb on - strandat 533.466 kb on + strandat 533.467 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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530,346 + ABID97_RS02590 0.44 +0.5
530,347 - ABID97_RS02590 0.45 +0.3
530,391 + ABID97_RS02590 0.52 +0.3
531,343 - -3.0
531,363 + -1.6
531,363 + +0.2
531,364 - +0.2
531,364 - -0.8
531,364 - -0.6
531,364 - -3.0
531,364 - -1.1
531,364 - +0.7
531,420 + ABID97_RS02600 0.11 +0.2
531,609 + ABID97_RS02600 0.27 -3.3
531,609 + ABID97_RS02600 0.27 -0.6
531,609 + ABID97_RS02600 0.27 -1.6
531,609 + ABID97_RS02600 0.27 -2.0
531,609 + ABID97_RS02600 0.27 -0.3
531,610 - ABID97_RS02600 0.27 -2.6
531,610 - ABID97_RS02600 0.27 -1.1
531,610 - ABID97_RS02600 0.27 -1.4
531,627 + ABID97_RS02600 0.28 +0.2
531,628 - ABID97_RS02600 0.28 -1.8
531,628 - ABID97_RS02600 0.28 -2.3
531,660 + ABID97_RS02600 0.31 -1.3
531,783 + ABID97_RS02600 0.42 -2.6
531,784 - ABID97_RS02600 0.42 -2.3
531,784 - ABID97_RS02600 0.42 -0.8
531,784 - ABID97_RS02600 0.42 -1.1
531,784 - ABID97_RS02600 0.42 -0.6
531,847 - ABID97_RS02600 0.47 -2.3
531,847 - ABID97_RS02600 0.47 -2.5
531,975 + ABID97_RS02600 0.58 -1.3
532,120 - ABID97_RS02600 0.70 -2.0
532,120 - ABID97_RS02600 0.70 -0.3
532,120 - ABID97_RS02600 0.70 -0.8
532,278 + ABID97_RS02600 0.84 -1.4
532,278 + ABID97_RS02600 0.84 -2.2
532,278 + ABID97_RS02600 0.84 +0.2
532,278 + ABID97_RS02600 0.84 -1.8
532,279 - ABID97_RS02600 0.84 -2.0
532,279 - ABID97_RS02600 0.84 -3.5
532,279 - ABID97_RS02600 0.84 -2.7
532,279 - ABID97_RS02600 0.84 -0.8
532,359 + -3.3
532,359 + -2.0
532,360 - -2.0
532,381 - -1.4
532,381 - -0.3
532,381 - -1.1
532,530 + -3.1
532,530 + -2.8
532,540 + +0.2
532,540 + +0.7
532,541 - -0.4
532,541 - +0.6
532,542 + -1.0
532,542 + -0.5
532,542 + -1.4
532,543 - +0.1
532,543 - -0.3
532,561 - +0.1
532,583 + -3.6
532,583 + -3.6
532,583 + +0.2
532,583 + -3.7
532,583 + -1.4
532,583 + +1.0
532,583 + -0.1
532,583 + -3.1
532,583 + -1.7
532,583 + -0.8
532,584 - -0.0
532,584 - +0.2
532,584 - -0.0
532,584 - -0.1
532,584 - +0.6
532,584 - -0.4
532,584 - -0.3
532,584 - -1.0
532,584 - +1.0
532,584 - +0.6
532,584 - +0.1
532,584 - +0.3
532,584 - -0.2
532,584 - +0.3
532,585 + +0.4
532,585 + +0.4
532,585 + +1.7
532,585 + +1.0
532,586 - +0.1
532,586 - +0.5
532,600 + +0.4
532,762 + ABID97_RS02605 0.29 +0.4
532,762 + ABID97_RS02605 0.29 -0.7
532,763 - ABID97_RS02605 0.29 -0.7
532,763 - ABID97_RS02605 0.29 -0.2
532,763 - ABID97_RS02605 0.29 -1.0
532,763 - ABID97_RS02605 0.29 +0.1
532,763 - ABID97_RS02605 0.29 -0.1
532,763 - ABID97_RS02605 0.29 -0.6
532,864 + ABID97_RS02605 0.47 +0.1
532,864 + ABID97_RS02605 0.47 -0.0
532,865 - ABID97_RS02605 0.47 +0.1
532,865 - ABID97_RS02605 0.47 -0.4
532,990 + ABID97_RS02605 0.69 +0.4
532,990 + ABID97_RS02605 0.69 +0.3
532,990 + ABID97_RS02605 0.69 +0.7
532,990 + ABID97_RS02605 0.69 +0.7
532,990 + ABID97_RS02605 0.69 -0.1
532,990 + ABID97_RS02605 0.69 +0.9
532,990 + ABID97_RS02605 0.69 -0.1
532,990 + ABID97_RS02605 0.69 -0.5
532,990 + ABID97_RS02605 0.69 -0.2
532,990 + ABID97_RS02605 0.69 +0.3
532,990 + ABID97_RS02605 0.69 +0.1
532,990 + ABID97_RS02605 0.69 -0.6
532,990 + ABID97_RS02605 0.69 -0.1
532,990 + ABID97_RS02605 0.69 -0.1
532,990 + ABID97_RS02605 0.69 +0.4
532,991 - ABID97_RS02605 0.70 +0.6
532,991 - ABID97_RS02605 0.70 +0.0
532,991 - ABID97_RS02605 0.70 +0.7
532,991 - ABID97_RS02605 0.70 +0.1
532,991 - ABID97_RS02605 0.70 +0.1
532,991 - ABID97_RS02605 0.70 -0.2
532,991 - ABID97_RS02605 0.70 -0.2
533,221 + -0.2
533,336 + +0.6
533,336 + +1.1
533,337 - +1.4
533,361 + +0.1
533,361 + +0.4
533,361 + +0.4
533,362 - +1.6
533,362 - +0.5
533,362 - +0.8
533,362 - +1.0
533,362 - +1.6
533,362 - +1.2
533,362 - +1.4
533,362 - +1.1
533,432 - +1.5
533,466 + +1.7
533,467 - +2.2

Or see this region's nucleotide sequence