Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02455

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS02445 and ABID97_RS02450 are separated by 135 nucleotidesABID97_RS02450 and ABID97_RS02455 are separated by 23 nucleotidesABID97_RS02455 and ABID97_RS02460 overlap by 4 nucleotides ABID97_RS02445: ABID97_RS02445 - transketolase, at 489,766 to 491,874 _RS02445 ABID97_RS02450: ABID97_RS02450 - adenosylmethionine decarboxylase, at 492,010 to 492,390 _RS02450 ABID97_RS02455: ABID97_RS02455 - nucleotidyltransferase family protein, at 492,414 to 493,124 _RS02455 ABID97_RS02460: ABID97_RS02460 - aminopeptidase P N-terminal domain-containing protein, at 493,121 to 494,515 _RS02460 Position (kb) 492 493 494Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 491.996 kb on + strandat 491.996 kb on + strandat 491.996 kb on + strandat 491.996 kb on + strandat 491.996 kb on + strandat 492.265 kb on + strand, within ABID97_RS02450at 492.265 kb on + strand, within ABID97_RS02450at 492.265 kb on + strand, within ABID97_RS02450at 492.265 kb on + strand, within ABID97_RS02450at 492.265 kb on + strand, within ABID97_RS02450at 492.265 kb on + strand, within ABID97_RS02450at 492.265 kb on + strand, within ABID97_RS02450at 492.265 kb on + strand, within ABID97_RS02450at 492.265 kb on + strand, within ABID97_RS02450at 492.266 kb on - strand, within ABID97_RS02450at 492.266 kb on - strand, within ABID97_RS02450at 492.266 kb on - strand, within ABID97_RS02450at 492.266 kb on - strand, within ABID97_RS02450at 492.266 kb on - strand, within ABID97_RS02450at 492.266 kb on - strand, within ABID97_RS02450at 492.266 kb on - strand, within ABID97_RS02450at 492.266 kb on - strand, within ABID97_RS02450at 492.266 kb on - strand, within ABID97_RS02450at 492.909 kb on + strand, within ABID97_RS02455at 492.909 kb on + strand, within ABID97_RS02455at 492.909 kb on + strand, within ABID97_RS02455at 492.909 kb on + strand, within ABID97_RS02455at 492.910 kb on - strand, within ABID97_RS02455at 492.933 kb on + strand, within ABID97_RS02455at 493.060 kb on - strandat 493.060 kb on - strandat 493.060 kb on - strandat 493.145 kb on + strandat 493.145 kb on + strandat 493.145 kb on + strandat 493.265 kb on + strand, within ABID97_RS02460at 493.266 kb on - strand, within ABID97_RS02460at 493.266 kb on - strand, within ABID97_RS02460at 493.266 kb on - strand, within ABID97_RS02460at 493.266 kb on - strand, within ABID97_RS02460at 493.266 kb on - strand, within ABID97_RS02460at 493.266 kb on - strand, within ABID97_RS02460at 493.266 kb on - strand, within ABID97_RS02460at 493.266 kb on - strand, within ABID97_RS02460at 493.266 kb on - strand, within ABID97_RS02460at 493.266 kb on - strand, within ABID97_RS02460at 493.271 kb on + strand, within ABID97_RS02460at 493.271 kb on + strand, within ABID97_RS02460at 493.271 kb on + strand, within ABID97_RS02460at 493.271 kb on + strand, within ABID97_RS02460at 493.271 kb on + strand, within ABID97_RS02460at 493.271 kb on + strand, within ABID97_RS02460at 493.271 kb on + strand, within ABID97_RS02460at 493.271 kb on + strand, within ABID97_RS02460at 493.272 kb on - strand, within ABID97_RS02460at 493.272 kb on - strand, within ABID97_RS02460at 493.272 kb on - strand, within ABID97_RS02460at 493.272 kb on - strand, within ABID97_RS02460at 493.272 kb on - strand, within ABID97_RS02460at 493.274 kb on + strand, within ABID97_RS02460at 493.274 kb on + strand, within ABID97_RS02460at 493.931 kb on + strand, within ABID97_RS02460at 493.942 kb on + strand, within ABID97_RS02460at 493.997 kb on + strand, within ABID97_RS02460at 493.998 kb on - strand, within ABID97_RS02460

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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491,996 + +0.7
491,996 + +0.0
491,996 + +0.1
491,996 + +0.3
491,996 + -0.0
492,265 + ABID97_RS02450 0.67 -0.5
492,265 + ABID97_RS02450 0.67 -0.1
492,265 + ABID97_RS02450 0.67 -0.0
492,265 + ABID97_RS02450 0.67 -2.6
492,265 + ABID97_RS02450 0.67 -1.2
492,265 + ABID97_RS02450 0.67 +0.0
492,265 + ABID97_RS02450 0.67 +0.1
492,265 + ABID97_RS02450 0.67 -0.2
492,265 + ABID97_RS02450 0.67 +0.4
492,266 - ABID97_RS02450 0.67 -0.1
492,266 - ABID97_RS02450 0.67 +0.0
492,266 - ABID97_RS02450 0.67 -0.0
492,266 - ABID97_RS02450 0.67 +0.2
492,266 - ABID97_RS02450 0.67 +0.2
492,266 - ABID97_RS02450 0.67 -0.6
492,266 - ABID97_RS02450 0.67 +0.8
492,266 - ABID97_RS02450 0.67 -0.1
492,266 - ABID97_RS02450 0.67 -0.2
492,909 + ABID97_RS02455 0.70 -2.8
492,909 + ABID97_RS02455 0.70 -1.9
492,909 + ABID97_RS02455 0.70 -3.4
492,909 + ABID97_RS02455 0.70 -3.6
492,910 - ABID97_RS02455 0.70 -2.2
492,933 + ABID97_RS02455 0.73 -2.8
493,060 - -4.5
493,060 - -0.9
493,060 - -3.1
493,145 + -1.3
493,145 + -2.5
493,145 + -2.6
493,265 + ABID97_RS02460 0.10 -0.8
493,266 - ABID97_RS02460 0.10 +0.0
493,266 - ABID97_RS02460 0.10 -2.1
493,266 - ABID97_RS02460 0.10 -1.6
493,266 - ABID97_RS02460 0.10 -1.1
493,266 - ABID97_RS02460 0.10 -0.2
493,266 - ABID97_RS02460 0.10 -0.2
493,266 - ABID97_RS02460 0.10 -1.4
493,266 - ABID97_RS02460 0.10 -2.4
493,266 - ABID97_RS02460 0.10 -2.2
493,266 - ABID97_RS02460 0.10 -2.4
493,271 + ABID97_RS02460 0.11 -2.5
493,271 + ABID97_RS02460 0.11 -2.7
493,271 + ABID97_RS02460 0.11 -2.0
493,271 + ABID97_RS02460 0.11 -0.2
493,271 + ABID97_RS02460 0.11 -3.2
493,271 + ABID97_RS02460 0.11 -1.7
493,271 + ABID97_RS02460 0.11 -2.5
493,271 + ABID97_RS02460 0.11 -0.1
493,272 - ABID97_RS02460 0.11 -3.3
493,272 - ABID97_RS02460 0.11 -0.8
493,272 - ABID97_RS02460 0.11 -1.8
493,272 - ABID97_RS02460 0.11 -0.2
493,272 - ABID97_RS02460 0.11 -0.8
493,274 + ABID97_RS02460 0.11 -1.2
493,274 + ABID97_RS02460 0.11 -1.7
493,931 + ABID97_RS02460 0.58 -2.6
493,942 + ABID97_RS02460 0.59 -1.7
493,997 + ABID97_RS02460 0.63 -1.7
493,998 - ABID97_RS02460 0.63 -0.9

Or see this region's nucleotide sequence