Experiment: L-Leucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01555 and ABID97_RS01560 are separated by 25 nucleotides ABID97_RS01560 and ABID97_RS01565 are separated by 69 nucleotides ABID97_RS01565 and ABID97_RS01570 are separated by 139 nucleotides
ABID97_RS01555: ABID97_RS01555 - pyrroline-5-carboxylate reductase, at 305,565 to 306,422
_RS01555
ABID97_RS01560: ABID97_RS01560 - 4-hydroxybenzoate octaprenyltransferase, at 306,448 to 307,308
_RS01560
ABID97_RS01565: ABID97_RS01565 - DNA starvation/stationary phase protection protein, at 307,378 to 307,950
_RS01565
ABID97_RS01570: ABID97_RS01570 - LysR substrate-binding domain-containing protein, at 308,090 to 309,055
_RS01570
Position (kb) 307
308 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 306.450 kb on - strand at 306.450 kb on - strand at 307.610 kb on + strand, within ABID97_RS01565 at 307.611 kb on - strand, within ABID97_RS01565 at 307.625 kb on + strand, within ABID97_RS01565 at 307.626 kb on - strand, within ABID97_RS01565 at 307.626 kb on - strand, within ABID97_RS01565 at 307.685 kb on + strand, within ABID97_RS01565 at 307.685 kb on + strand, within ABID97_RS01565 at 307.763 kb on + strand, within ABID97_RS01565 at 307.764 kb on - strand, within ABID97_RS01565 at 307.772 kb on + strand, within ABID97_RS01565 at 307.772 kb on + strand, within ABID97_RS01565 at 307.773 kb on - strand, within ABID97_RS01565 at 307.773 kb on - strand, within ABID97_RS01565 at 307.773 kb on - strand, within ABID97_RS01565 at 308.092 kb on - strand at 308.127 kb on + strand at 308.127 kb on + strand at 308.127 kb on + strand at 308.127 kb on + strand at 308.127 kb on + strand at 308.128 kb on - strand at 308.128 kb on - strand at 308.128 kb on - strand at 308.128 kb on - strand at 308.128 kb on - strand at 308.128 kb on - strand at 308.128 kb on - strand at 308.128 kb on - strand at 308.128 kb on - strand at 308.128 kb on - strand at 308.241 kb on + strand, within ABID97_RS01570 at 308.574 kb on + strand, within ABID97_RS01570 at 308.575 kb on - strand, within ABID97_RS01570 at 308.760 kb on + strand, within ABID97_RS01570 at 308.760 kb on + strand, within ABID97_RS01570 at 308.761 kb on - strand, within ABID97_RS01570 at 308.761 kb on - strand, within ABID97_RS01570 at 308.761 kb on - strand, within ABID97_RS01570 at 308.761 kb on - strand, within ABID97_RS01570
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (C) remove 306,450 - +0.1 306,450 - +1.7 307,610 + ABID97_RS01565 0.40 +0.2 307,611 - ABID97_RS01565 0.41 -4.3 307,625 + ABID97_RS01565 0.43 -3.5 307,626 - ABID97_RS01565 0.43 -2.3 307,626 - ABID97_RS01565 0.43 -5.0 307,685 + ABID97_RS01565 0.54 -6.0 307,685 + ABID97_RS01565 0.54 -0.8 307,763 + ABID97_RS01565 0.67 -5.3 307,764 - ABID97_RS01565 0.67 -0.8 307,772 + ABID97_RS01565 0.69 -2.9 307,772 + ABID97_RS01565 0.69 -6.1 307,773 - ABID97_RS01565 0.69 -4.0 307,773 - ABID97_RS01565 0.69 -5.3 307,773 - ABID97_RS01565 0.69 -3.8 308,092 - -0.8 308,127 + -0.3 308,127 + +0.5 308,127 + -0.6 308,127 + -0.2 308,127 + -1.0 308,128 - +0.3 308,128 - -0.1 308,128 - +0.2 308,128 - +0.5 308,128 - +0.2 308,128 - +0.6 308,128 - -0.1 308,128 - +0.3 308,128 - +0.5 308,128 - +0.1 308,241 + ABID97_RS01570 0.16 +0.7 308,574 + ABID97_RS01570 0.50 -0.2 308,575 - ABID97_RS01570 0.50 +0.9 308,760 + ABID97_RS01570 0.69 +0.8 308,760 + ABID97_RS01570 0.69 +1.4 308,761 - ABID97_RS01570 0.69 -0.3 308,761 - ABID97_RS01570 0.69 +1.4 308,761 - ABID97_RS01570 0.69 -0.1 308,761 - ABID97_RS01570 0.69 +0.4
Or see this region's nucleotide sequence