Strain Fitness in Escherichia coli BW25113 around b3344

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrpsG and rpsL are separated by 96 nucleotidesrpsL and yheL are separated by 125 nucleotidesyheL and yheM are separated by 7 nucleotidesyheM and yheN overlap by 1 nucleotidesyheN and yheO overlap by 1 nucleotides b3341: rpsG - 30S ribosomal protein S7 (NCBI), at 3,471,564 to 3,472,103 rpsG b3342: rpsL - 30S ribosomal protein S12 (NCBI), at 3,472,200 to 3,472,574 rpsL b3343: yheL - predicted intracellular sulfur oxidation protein (NCBI), at 3,472,700 to 3,472,987 yheL b3344: yheM - hypothetical protein (NCBI), at 3,472,995 to 3,473,354 yheM b3345: yheN - hypothetical protein (NCBI), at 3,473,354 to 3,473,740 yheN b3346: yheO - orf, hypothetical protein (VIMSS), at 3,473,740 to 3,474,462 yheO Position (kb) 3472 3473 3474Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3472.212 kb on - strandat 3472.640 kb on - strandat 3472.640 kb on - strandat 3472.681 kb on + strandat 3472.681 kb on - strandat 3472.987 kb on - strandat 3472.987 kb on - strandat 3472.999 kb on - strandat 3473.352 kb on + strandat 3473.352 kb on + strandat 3473.745 kb on + strandat 3473.778 kb on + strandat 3473.784 kb on + strandat 3473.788 kb on + strandat 3473.788 kb on + strandat 3473.788 kb on + strandat 3473.790 kb on + strandat 3473.798 kb on - strandat 3473.800 kb on + strandat 3473.809 kb on - strandat 3473.810 kb on - strandat 3473.913 kb on - strand, within yheOat 3473.913 kb on - strand, within yheOat 3473.920 kb on - strand, within yheOat 3473.931 kb on - strand, within yheOat 3474.071 kb on - strand, within yheOat 3474.072 kb on - strand, within yheOat 3474.097 kb on - strand, within yheOat 3474.122 kb on + strand, within yheOat 3474.181 kb on + strand, within yheOat 3474.187 kb on - strand, within yheOat 3474.205 kb on - strand, within yheOat 3474.207 kb on + strand, within yheOat 3474.207 kb on - strand, within yheOat 3474.214 kb on - strand, within yheOat 3474.251 kb on + strand, within yheOat 3474.251 kb on + strand, within yheOat 3474.257 kb on - strand, within yheOat 3474.257 kb on - strand, within yheOat 3474.272 kb on - strand, within yheOat 3474.350 kb on - strand, within yheOat 3474.350 kb on - strand, within yheO

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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3,472,212 - +1.1
3,472,640 - +0.4
3,472,640 - +1.3
3,472,681 + +0.7
3,472,681 - -1.3
3,472,987 - -0.8
3,472,987 - -0.5
3,472,999 - +0.3
3,473,352 + +0.2
3,473,352 + -0.7
3,473,745 + +1.0
3,473,778 + +1.7
3,473,784 + +1.5
3,473,788 + +1.0
3,473,788 + +1.6
3,473,788 + +2.7
3,473,790 + +3.9
3,473,798 - -0.7
3,473,800 + +1.5
3,473,809 - -0.9
3,473,810 - +0.4
3,473,913 - yheO b3346 0.24 +0.1
3,473,913 - yheO b3346 0.24 -1.3
3,473,920 - yheO b3346 0.25 -0.5
3,473,931 - yheO b3346 0.26 -1.8
3,474,071 - yheO b3346 0.46 -0.1
3,474,072 - yheO b3346 0.46 +0.7
3,474,097 - yheO b3346 0.49 +0.6
3,474,122 + yheO b3346 0.53 +2.7
3,474,181 + yheO b3346 0.61 +0.9
3,474,187 - yheO b3346 0.62 -0.0
3,474,205 - yheO b3346 0.64 +0.1
3,474,207 + yheO b3346 0.65 -0.2
3,474,207 - yheO b3346 0.65 +0.1
3,474,214 - yheO b3346 0.66 +0.4
3,474,251 + yheO b3346 0.71 +0.6
3,474,251 + yheO b3346 0.71 +1.0
3,474,257 - yheO b3346 0.72 -0.1
3,474,257 - yheO b3346 0.72 -0.4
3,474,272 - yheO b3346 0.74 +0.8
3,474,350 - yheO b3346 0.84 -0.0
3,474,350 - yheO b3346 0.84 +0.6

Or see this region's nucleotide sequence