Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rpsG and rpsL are separated by 96 nucleotides rpsL and yheL are separated by 125 nucleotides yheL and yheM are separated by 7 nucleotides yheM and yheN overlap by 1 nucleotides yheN and yheO overlap by 1 nucleotides
b3341: rpsG - 30S ribosomal protein S7 (NCBI), at 3,471,564 to 3,472,103
rpsG
b3342: rpsL - 30S ribosomal protein S12 (NCBI), at 3,472,200 to 3,472,574
rpsL
b3343: yheL - predicted intracellular sulfur oxidation protein (NCBI), at 3,472,700 to 3,472,987
yheL
b3344: yheM - hypothetical protein (NCBI), at 3,472,995 to 3,473,354
yheM
b3345: yheN - hypothetical protein (NCBI), at 3,473,354 to 3,473,740
yheN
b3346: yheO - orf, hypothetical protein (VIMSS), at 3,473,740 to 3,474,462
yheO
Position (kb)
3472
3473
3474 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3472.212 kb on - strand at 3472.640 kb on - strand at 3472.640 kb on - strand at 3472.681 kb on + strand at 3472.681 kb on - strand at 3472.987 kb on - strand at 3472.987 kb on - strand at 3472.999 kb on - strand at 3473.352 kb on + strand at 3473.352 kb on + strand at 3473.745 kb on + strand at 3473.778 kb on + strand at 3473.784 kb on + strand at 3473.788 kb on + strand at 3473.788 kb on + strand at 3473.788 kb on + strand at 3473.790 kb on + strand at 3473.798 kb on - strand at 3473.800 kb on + strand at 3473.809 kb on - strand at 3473.810 kb on - strand at 3473.913 kb on - strand, within yheO at 3473.913 kb on - strand, within yheO at 3473.920 kb on - strand, within yheO at 3473.931 kb on - strand, within yheO at 3474.071 kb on - strand, within yheO at 3474.072 kb on - strand, within yheO at 3474.097 kb on - strand, within yheO at 3474.122 kb on + strand, within yheO at 3474.181 kb on + strand, within yheO at 3474.187 kb on - strand, within yheO at 3474.205 kb on - strand, within yheO at 3474.207 kb on + strand, within yheO at 3474.207 kb on - strand, within yheO at 3474.214 kb on - strand, within yheO at 3474.251 kb on + strand, within yheO at 3474.251 kb on + strand, within yheO at 3474.257 kb on - strand, within yheO at 3474.257 kb on - strand, within yheO at 3474.272 kb on - strand, within yheO at 3474.350 kb on - strand, within yheO at 3474.350 kb on - strand, within yheO
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 3,472,212 - +1.1 3,472,640 - +0.4 3,472,640 - +1.3 3,472,681 + +0.7 3,472,681 - -1.3 3,472,987 - -0.8 3,472,987 - -0.5 3,472,999 - +0.3 3,473,352 + +0.2 3,473,352 + -0.7 3,473,745 + +1.0 3,473,778 + +1.7 3,473,784 + +1.5 3,473,788 + +1.0 3,473,788 + +1.6 3,473,788 + +2.7 3,473,790 + +3.9 3,473,798 - -0.7 3,473,800 + +1.5 3,473,809 - -0.9 3,473,810 - +0.4 3,473,913 - yheO b3346 0.24 +0.1 3,473,913 - yheO b3346 0.24 -1.3 3,473,920 - yheO b3346 0.25 -0.5 3,473,931 - yheO b3346 0.26 -1.8 3,474,071 - yheO b3346 0.46 -0.1 3,474,072 - yheO b3346 0.46 +0.7 3,474,097 - yheO b3346 0.49 +0.6 3,474,122 + yheO b3346 0.53 +2.7 3,474,181 + yheO b3346 0.61 +0.9 3,474,187 - yheO b3346 0.62 -0.0 3,474,205 - yheO b3346 0.64 +0.1 3,474,207 + yheO b3346 0.65 -0.2 3,474,207 - yheO b3346 0.65 +0.1 3,474,214 - yheO b3346 0.66 +0.4 3,474,251 + yheO b3346 0.71 +0.6 3,474,251 + yheO b3346 0.71 +1.0 3,474,257 - yheO b3346 0.72 -0.1 3,474,257 - yheO b3346 0.72 -0.4 3,474,272 - yheO b3346 0.74 +0.8 3,474,350 - yheO b3346 0.84 -0.0 3,474,350 - yheO b3346 0.84 +0.6
Or see this region's nucleotide sequence