Strain Fitness in Escherichia coli BW25113 around b3287

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsmf and def are separated by 129 nucleotidesdef and fmt are separated by 14 nucleotides b4473: smf - hypothetical protein (NCBI), at 3,430,458 to 3,431,582 smf b3287: def - peptide deformylase (NCBI), at 3,431,712 to 3,432,221 def b3288: fmt - methionyl-tRNA formyltransferase (NCBI), at 3,432,236 to 3,433,183 fmt Position (kb) 3431 3432 3433Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3430.793 kb on + strand, within smfat 3430.801 kb on - strand, within smfat 3430.815 kb on - strand, within smfat 3430.828 kb on - strand, within smfat 3430.828 kb on - strand, within smfat 3430.871 kb on + strand, within smfat 3430.876 kb on + strand, within smfat 3430.876 kb on - strand, within smfat 3430.881 kb on - strand, within smfat 3430.891 kb on + strand, within smfat 3430.891 kb on + strand, within smfat 3430.921 kb on + strand, within smfat 3430.921 kb on + strand, within smfat 3430.927 kb on - strand, within smfat 3430.944 kb on - strand, within smfat 3430.944 kb on - strand, within smfat 3430.980 kb on - strand, within smfat 3430.984 kb on - strand, within smfat 3431.013 kb on + strand, within smfat 3431.017 kb on + strand, within smfat 3431.018 kb on + strand, within smfat 3431.065 kb on + strand, within smfat 3431.073 kb on - strand, within smfat 3431.079 kb on + strand, within smfat 3431.126 kb on + strand, within smfat 3431.134 kb on - strand, within smfat 3431.134 kb on - strand, within smfat 3431.221 kb on + strand, within smfat 3431.373 kb on + strand, within smfat 3431.376 kb on - strand, within smfat 3431.415 kb on - strand, within smfat 3431.415 kb on - strand, within smfat 3431.448 kb on + strand, within smfat 3431.448 kb on + strand, within smfat 3431.455 kb on - strand, within smfat 3431.455 kb on - strand, within smfat 3431.468 kb on + strand, within smfat 3431.474 kb on - strandat 3431.482 kb on + strandat 3431.509 kb on + strandat 3431.512 kb on + strandat 3431.517 kb on + strandat 3431.527 kb on - strandat 3431.578 kb on + strandat 3431.666 kb on - strandat 3431.697 kb on + strandat 3431.697 kb on + strandat 3432.172 kb on + strandat 3432.204 kb on + strandat 3432.204 kb on + strandat 3432.238 kb on + strandat 3433.170 kb on + strandat 3433.177 kb on + strandat 3433.178 kb on + strandat 3433.186 kb on - strandat 3433.186 kb on - strandat 3433.193 kb on + strandat 3433.193 kb on + strandat 3433.218 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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3,430,793 + smf b4473 0.30 +1.0
3,430,801 - smf b4473 0.30 +0.2
3,430,815 - smf b4473 0.32 +0.5
3,430,828 - smf b4473 0.33 +0.9
3,430,828 - smf b4473 0.33 +0.0
3,430,871 + smf b4473 0.37 -0.7
3,430,876 + smf b4473 0.37 +0.1
3,430,876 - smf b4473 0.37 -0.9
3,430,881 - smf b4473 0.38 -0.4
3,430,891 + smf b4473 0.38 +0.5
3,430,891 + smf b4473 0.38 -0.1
3,430,921 + smf b4473 0.41 +0.2
3,430,921 + smf b4473 0.41 +0.5
3,430,927 - smf b4473 0.42 +0.1
3,430,944 - smf b4473 0.43 +0.4
3,430,944 - smf b4473 0.43 +0.7
3,430,980 - smf b4473 0.46 +1.2
3,430,984 - smf b4473 0.47 +0.1
3,431,013 + smf b4473 0.49 +0.2
3,431,017 + smf b4473 0.50 -0.3
3,431,018 + smf b4473 0.50 +0.2
3,431,065 + smf b4473 0.54 +0.7
3,431,073 - smf b4473 0.55 +0.7
3,431,079 + smf b4473 0.55 -0.9
3,431,126 + smf b4473 0.59 +0.4
3,431,134 - smf b4473 0.60 +0.3
3,431,134 - smf b4473 0.60 -0.1
3,431,221 + smf b4473 0.68 +0.9
3,431,373 + smf b4473 0.81 +1.2
3,431,376 - smf b4473 0.82 +1.1
3,431,415 - smf b4473 0.85 -1.1
3,431,415 - smf b4473 0.85 +0.6
3,431,448 + smf b4473 0.88 +0.3
3,431,448 + smf b4473 0.88 +0.5
3,431,455 - smf b4473 0.89 +0.5
3,431,455 - smf b4473 0.89 +0.3
3,431,468 + smf b4473 0.90 -1.3
3,431,474 - -0.1
3,431,482 + +0.3
3,431,509 + +0.1
3,431,512 + -0.1
3,431,517 + -0.5
3,431,527 - +0.4
3,431,578 + -1.9
3,431,666 - -0.3
3,431,697 + -0.0
3,431,697 + -0.7
3,432,172 + -2.8
3,432,204 + -0.7
3,432,204 + +0.5
3,432,238 + +1.3
3,433,170 + +0.6
3,433,177 + -0.6
3,433,178 + +0.3
3,433,186 - -0.0
3,433,186 - +2.3
3,433,193 + -0.4
3,433,193 + -0.5
3,433,218 + -0.3

Or see this region's nucleotide sequence