Strain Fitness in Escherichia coli BW25113 around b2724

Experiment: succinate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 nthycC and hycB overlap by 4 nucleotideshycB and hycA are separated by 124 nucleotideshycA and hypA are separated by 211 nucleotides b2723: hycC - NADH dehydrogenase subunit N (NCBI), at 2,845,437 to 2,847,263 hycC b2724: hycB - hydrogenase 3, Fe-S subunit (NCBI), at 2,847,260 to 2,847,871 hycB b2725: hycA - regulator of the transcriptional regulator FhlA (NCBI), at 2,847,996 to 2,848,457 hycA b2726: hypA - protein involved in nickel insertion into hydrogenases 3 (NCBI), at 2,848,669 to 2,849,019 hypA Position (kb) 2847 2848Strain fitness (log2 ratio) -2 -1 0 1at 2846.264 kb on + strand, within hycCat 2846.269 kb on + strand, within hycCat 2846.269 kb on + strand, within hycCat 2846.269 kb on + strand, within hycCat 2846.269 kb on + strand, within hycCat 2846.272 kb on - strand, within hycCat 2846.345 kb on - strand, within hycCat 2846.381 kb on + strand, within hycCat 2846.406 kb on - strand, within hycCat 2846.406 kb on - strand, within hycCat 2846.475 kb on - strand, within hycCat 2846.506 kb on - strand, within hycCat 2846.699 kb on + strand, within hycCat 2846.699 kb on + strand, within hycCat 2846.731 kb on - strand, within hycCat 2846.810 kb on - strand, within hycCat 2846.886 kb on - strand, within hycCat 2846.886 kb on - strand, within hycCat 2846.941 kb on - strand, within hycCat 2846.953 kb on + strand, within hycCat 2846.953 kb on + strand, within hycCat 2846.977 kb on + strand, within hycCat 2846.985 kb on - strand, within hycCat 2846.985 kb on - strand, within hycCat 2847.072 kb on - strand, within hycCat 2847.099 kb on + strandat 2847.139 kb on - strandat 2847.276 kb on - strandat 2847.353 kb on + strand, within hycBat 2847.363 kb on + strand, within hycBat 2847.421 kb on + strand, within hycBat 2847.437 kb on - strand, within hycBat 2847.455 kb on + strand, within hycBat 2847.621 kb on + strand, within hycBat 2847.621 kb on + strand, within hycBat 2847.621 kb on - strand, within hycBat 2847.644 kb on + strand, within hycBat 2847.703 kb on + strand, within hycBat 2847.711 kb on - strand, within hycBat 2847.722 kb on - strand, within hycBat 2847.761 kb on - strand, within hycBat 2847.822 kb on - strandat 2847.829 kb on + strandat 2847.829 kb on + strandat 2847.888 kb on - strandat 2847.953 kb on - strandat 2848.071 kb on - strand, within hycAat 2848.073 kb on - strand, within hycAat 2848.073 kb on - strand, within hycAat 2848.082 kb on - strand, within hycAat 2848.153 kb on - strand, within hycAat 2848.153 kb on - strand, within hycAat 2848.157 kb on + strand, within hycAat 2848.157 kb on + strand, within hycAat 2848.253 kb on - strand, within hycAat 2848.253 kb on - strand, within hycAat 2848.684 kb on - strandat 2848.684 kb on - strandat 2848.684 kb on - strandat 2848.719 kb on - strand, within hypAat 2848.850 kb on - strand, within hypA

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
remove
2,846,264 + hycC b2723 0.45 +1.3
2,846,269 + hycC b2723 0.46 +0.3
2,846,269 + hycC b2723 0.46 +0.9
2,846,269 + hycC b2723 0.46 -1.3
2,846,269 + hycC b2723 0.46 -1.0
2,846,272 - hycC b2723 0.46 -0.9
2,846,345 - hycC b2723 0.50 -0.5
2,846,381 + hycC b2723 0.52 -0.6
2,846,406 - hycC b2723 0.53 -0.6
2,846,406 - hycC b2723 0.53 -2.1
2,846,475 - hycC b2723 0.57 -0.1
2,846,506 - hycC b2723 0.59 -0.7
2,846,699 + hycC b2723 0.69 -1.0
2,846,699 + hycC b2723 0.69 -0.8
2,846,731 - hycC b2723 0.71 -0.7
2,846,810 - hycC b2723 0.75 -0.2
2,846,886 - hycC b2723 0.79 -0.2
2,846,886 - hycC b2723 0.79 -1.3
2,846,941 - hycC b2723 0.82 +0.7
2,846,953 + hycC b2723 0.83 -1.3
2,846,953 + hycC b2723 0.83 -0.4
2,846,977 + hycC b2723 0.84 +0.1
2,846,985 - hycC b2723 0.85 +1.3
2,846,985 - hycC b2723 0.85 -0.0
2,847,072 - hycC b2723 0.89 -0.3
2,847,099 + +1.0
2,847,139 - +0.1
2,847,276 - +0.0
2,847,353 + hycB b2724 0.15 -0.1
2,847,363 + hycB b2724 0.17 +0.2
2,847,421 + hycB b2724 0.26 -0.2
2,847,437 - hycB b2724 0.29 +0.6
2,847,455 + hycB b2724 0.32 +0.3
2,847,621 + hycB b2724 0.59 -1.1
2,847,621 + hycB b2724 0.59 +0.1
2,847,621 - hycB b2724 0.59 -0.1
2,847,644 + hycB b2724 0.63 -0.6
2,847,703 + hycB b2724 0.72 +1.6
2,847,711 - hycB b2724 0.74 -0.6
2,847,722 - hycB b2724 0.75 -2.3
2,847,761 - hycB b2724 0.82 +0.2
2,847,822 - +0.3
2,847,829 + -0.4
2,847,829 + -0.1
2,847,888 - +0.1
2,847,953 - -0.3
2,848,071 - hycA b2725 0.16 +0.2
2,848,073 - hycA b2725 0.17 +0.1
2,848,073 - hycA b2725 0.17 +0.2
2,848,082 - hycA b2725 0.19 -1.5
2,848,153 - hycA b2725 0.34 -0.1
2,848,153 - hycA b2725 0.34 -0.7
2,848,157 + hycA b2725 0.35 -0.9
2,848,157 + hycA b2725 0.35 +0.3
2,848,253 - hycA b2725 0.56 +0.3
2,848,253 - hycA b2725 0.56 -0.2
2,848,684 - +0.1
2,848,684 - -0.9
2,848,684 - +0.5
2,848,719 - hypA b2726 0.14 -0.5
2,848,850 - hypA b2726 0.52 +0.4

Or see this region's nucleotide sequence