Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fabB and b2324 are separated by 158 nucleotides b2324 and yfcL are separated by 120 nucleotides yfcL and yfcM are separated by 33 nucleotides yfcM and yfcA overlap by 1 nucleotides
b2323: fabB - 3-oxoacyl-(acyl carrier protein) synthase (NCBI), at 2,438,407 to 2,439,627
fabB
b2324: b2324 - putative peptidase (VIMSS), at 2,439,786 to 2,441,792
b2324
b2325: yfcL - hypothetical protein (NCBI), at 2,441,913 to 2,442,191
yfcL
b2326: yfcM - hypothetical protein (NCBI), at 2,442,225 to 2,442,773
yfcM
b2327: yfcA - conserved inner membrane protein (NCBI), at 2,442,773 to 2,443,582
yfcA
Position (kb)
2439
2440
2441
2442 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2439.701 kb on - strand at 2439.733 kb on + strand at 2439.733 kb on + strand at 2439.741 kb on - strand at 2439.765 kb on + strand at 2439.765 kb on + strand at 2439.799 kb on + strand at 2439.933 kb on - strand at 2439.991 kb on - strand, within b2324 at 2440.001 kb on - strand, within b2324 at 2440.001 kb on - strand, within b2324 at 2440.172 kb on + strand, within b2324 at 2440.172 kb on + strand, within b2324 at 2440.185 kb on - strand, within b2324 at 2440.251 kb on - strand, within b2324 at 2440.535 kb on + strand, within b2324 at 2440.535 kb on + strand, within b2324 at 2440.551 kb on + strand, within b2324 at 2440.686 kb on - strand, within b2324 at 2440.688 kb on + strand, within b2324 at 2440.946 kb on + strand, within b2324 at 2440.993 kb on + strand, within b2324 at 2441.008 kb on + strand, within b2324 at 2441.008 kb on - strand, within b2324 at 2441.008 kb on - strand, within b2324 at 2441.139 kb on + strand, within b2324 at 2441.147 kb on - strand, within b2324 at 2441.199 kb on - strand, within b2324 at 2441.199 kb on - strand, within b2324 at 2441.329 kb on + strand, within b2324 at 2441.458 kb on + strand, within b2324 at 2441.471 kb on + strand, within b2324 at 2441.618 kb on - strand at 2441.625 kb on + strand at 2441.625 kb on + strand at 2441.751 kb on - strand at 2441.839 kb on + strand at 2441.883 kb on + strand at 2441.904 kb on - strand at 2441.966 kb on + strand, within yfcL at 2441.966 kb on + strand, within yfcL at 2442.015 kb on + strand, within yfcL at 2442.015 kb on + strand, within yfcL at 2442.033 kb on - strand, within yfcL at 2442.050 kb on + strand, within yfcL at 2442.050 kb on + strand, within yfcL at 2442.200 kb on - strand at 2442.221 kb on + strand at 2442.316 kb on - strand, within yfcM at 2442.343 kb on + strand, within yfcM at 2442.357 kb on - strand, within yfcM at 2442.440 kb on + strand, within yfcM at 2442.522 kb on + strand, within yfcM at 2442.583 kb on - strand, within yfcM at 2442.647 kb on - strand, within yfcM at 2442.647 kb on - strand, within yfcM at 2442.696 kb on - strand, within yfcM at 2442.758 kb on + strand at 2442.758 kb on + strand at 2442.758 kb on + strand at 2442.766 kb on - strand at 2442.766 kb on - strand at 2442.766 kb on - strand at 2442.766 kb on - strand at 2442.777 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 2,439,701 - +0.9 2,439,733 + -0.6 2,439,733 + +0.5 2,439,741 - -0.4 2,439,765 + +0.3 2,439,765 + +1.1 2,439,799 + +0.8 2,439,933 - +0.8 2,439,991 - b2324 b2324 0.10 +0.5 2,440,001 - b2324 b2324 0.11 -1.0 2,440,001 - b2324 b2324 0.11 +0.5 2,440,172 + b2324 b2324 0.19 +0.4 2,440,172 + b2324 b2324 0.19 +0.5 2,440,185 - b2324 b2324 0.20 +0.6 2,440,251 - b2324 b2324 0.23 +3.1 2,440,535 + b2324 b2324 0.37 -0.1 2,440,535 + b2324 b2324 0.37 -0.2 2,440,551 + b2324 b2324 0.38 +0.5 2,440,686 - b2324 b2324 0.45 +0.3 2,440,688 + b2324 b2324 0.45 +0.3 2,440,946 + b2324 b2324 0.58 -0.7 2,440,993 + b2324 b2324 0.60 +0.6 2,441,008 + b2324 b2324 0.61 +1.2 2,441,008 - b2324 b2324 0.61 -0.0 2,441,008 - b2324 b2324 0.61 +0.3 2,441,139 + b2324 b2324 0.67 -1.0 2,441,147 - b2324 b2324 0.68 -0.1 2,441,199 - b2324 b2324 0.70 +1.1 2,441,199 - b2324 b2324 0.70 -0.5 2,441,329 + b2324 b2324 0.77 +1.1 2,441,458 + b2324 b2324 0.83 +1.1 2,441,471 + b2324 b2324 0.84 +0.3 2,441,618 - +0.9 2,441,625 + +0.6 2,441,625 + +1.2 2,441,751 - +2.6 2,441,839 + -0.8 2,441,883 + +0.7 2,441,904 - +0.5 2,441,966 + yfcL b2325 0.19 +1.3 2,441,966 + yfcL b2325 0.19 -0.0 2,442,015 + yfcL b2325 0.37 +0.2 2,442,015 + yfcL b2325 0.37 -1.1 2,442,033 - yfcL b2325 0.43 +0.4 2,442,050 + yfcL b2325 0.49 -1.5 2,442,050 + yfcL b2325 0.49 +0.5 2,442,200 - -1.8 2,442,221 + +0.7 2,442,316 - yfcM b2326 0.17 +0.9 2,442,343 + yfcM b2326 0.21 -1.8 2,442,357 - yfcM b2326 0.24 -0.5 2,442,440 + yfcM b2326 0.39 -0.1 2,442,522 + yfcM b2326 0.54 +0.2 2,442,583 - yfcM b2326 0.65 -0.6 2,442,647 - yfcM b2326 0.77 +0.5 2,442,647 - yfcM b2326 0.77 -0.3 2,442,696 - yfcM b2326 0.86 +0.3 2,442,758 + -0.4 2,442,758 + -0.3 2,442,758 + +1.3 2,442,766 - -0.7 2,442,766 - -0.1 2,442,766 - +0.7 2,442,766 - -0.4 2,442,777 - -1.6
Or see this region's nucleotide sequence