Strain Fitness in Escherichia coli BW25113 around b1593

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntb1592 and b1593 overlap by 48 nucleotidesb1593 and dgsA are separated by 124 nucleotides b1592: b1592 - putative chloride channel (VIMSS), at 1,663,339 to 1,664,595 b1592 b1593: b1593 - orf, hypothetical protein (VIMSS), at 1,664,548 to 1,665,243 b1593 b1594: dgsA - DNA-binding transcriptional repressor (NCBI), at 1,665,368 to 1,666,588 dgsA Position (kb) 1664 1665 1666Strain fitness (log2 ratio) -2 -1 0 1at 1663.574 kb on + strand, within b1592at 1663.574 kb on + strand, within b1592at 1663.876 kb on - strand, within b1592at 1663.921 kb on - strand, within b1592at 1663.990 kb on - strand, within b1592at 1663.990 kb on - strand, within b1592at 1664.007 kb on + strand, within b1592at 1664.007 kb on + strand, within b1592at 1664.013 kb on + strand, within b1592at 1664.279 kb on + strand, within b1592at 1664.301 kb on + strand, within b1592at 1664.341 kb on + strand, within b1592at 1664.343 kb on - strand, within b1592at 1664.359 kb on + strand, within b1592at 1664.448 kb on + strand, within b1592at 1664.448 kb on + strand, within b1592at 1664.579 kb on - strandat 1664.586 kb on + strandat 1664.586 kb on + strandat 1664.976 kb on + strand, within b1593at 1664.983 kb on + strand, within b1593at 1664.983 kb on + strand, within b1593at 1664.991 kb on - strand, within b1593at 1664.991 kb on - strand, within b1593at 1664.991 kb on - strand, within b1593at 1665.407 kb on - strandat 1665.479 kb on - strandat 1665.479 kb on - strandat 1665.479 kb on - strandat 1665.479 kb on - strandat 1665.493 kb on - strand, within dgsAat 1665.645 kb on - strand, within dgsAat 1665.645 kb on - strand, within dgsAat 1665.781 kb on - strand, within dgsAat 1665.781 kb on - strand, within dgsAat 1665.898 kb on + strand, within dgsAat 1665.919 kb on + strand, within dgsAat 1665.919 kb on + strand, within dgsAat 1666.141 kb on - strand, within dgsA

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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1,663,574 + b1592 b1592 0.19 -0.4
1,663,574 + b1592 b1592 0.19 -0.6
1,663,876 - b1592 b1592 0.43 +0.2
1,663,921 - b1592 b1592 0.46 +0.5
1,663,990 - b1592 b1592 0.52 +0.1
1,663,990 - b1592 b1592 0.52 +0.2
1,664,007 + b1592 b1592 0.53 -0.8
1,664,007 + b1592 b1592 0.53 -1.6
1,664,013 + b1592 b1592 0.54 +0.6
1,664,279 + b1592 b1592 0.75 -0.0
1,664,301 + b1592 b1592 0.77 -0.3
1,664,341 + b1592 b1592 0.80 +0.6
1,664,343 - b1592 b1592 0.80 +0.7
1,664,359 + b1592 b1592 0.81 +0.0
1,664,448 + b1592 b1592 0.88 -1.1
1,664,448 + b1592 b1592 0.88 -0.7
1,664,579 - +0.6
1,664,586 + -0.0
1,664,586 + -0.6
1,664,976 + b1593 b1593 0.61 +0.5
1,664,983 + b1593 b1593 0.62 +0.1
1,664,983 + b1593 b1593 0.62 -1.9
1,664,991 - b1593 b1593 0.64 -0.3
1,664,991 - b1593 b1593 0.64 +0.3
1,664,991 - b1593 b1593 0.64 -0.1
1,665,407 - -0.1
1,665,479 - +0.9
1,665,479 - -0.8
1,665,479 - -0.1
1,665,479 - +0.4
1,665,493 - dgsA b1594 0.10 +0.4
1,665,645 - dgsA b1594 0.23 +0.7
1,665,645 - dgsA b1594 0.23 +0.2
1,665,781 - dgsA b1594 0.34 +0.5
1,665,781 - dgsA b1594 0.34 +0.0
1,665,898 + dgsA b1594 0.43 -0.4
1,665,919 + dgsA b1594 0.45 -0.8
1,665,919 + dgsA b1594 0.45 -1.1
1,666,141 - dgsA b1594 0.63 -1.0

Or see this region's nucleotide sequence