Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybhC and ybhB are separated by 151 nucleotides ybhB and bioA are separated by 58 nucleotides bioA and bioB are separated by 86 nucleotides
b0772: ybhC - predicted pectinesterase (NCBI), at 805,221 to 806,504
ybhC
b0773: ybhB - predicted kinase inhibitor (NCBI), at 806,656 to 807,132
ybhB
b0774: bioA - adenosylmethionine--8-amino-7-oxononanoate transaminase (NCBI), at 807,191 to 808,480
bioA
b0775: bioB - biotin synthase (NCBI), at 808,567 to 809,607
bioB
Position (kb)
807
808
809 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 806.233 kb on - strand, within ybhC at 806.233 kb on - strand, within ybhC at 806.288 kb on + strand, within ybhC at 806.386 kb on - strand at 806.421 kb on - strand at 806.421 kb on - strand at 806.444 kb on - strand at 806.559 kb on + strand at 806.559 kb on + strand at 806.611 kb on + strand at 806.710 kb on + strand, within ybhB at 806.746 kb on + strand, within ybhB at 806.754 kb on + strand, within ybhB at 806.754 kb on + strand, within ybhB at 806.879 kb on + strand, within ybhB at 806.879 kb on + strand, within ybhB at 806.886 kb on - strand, within ybhB at 806.983 kb on - strand, within ybhB at 807.068 kb on + strand, within ybhB at 807.146 kb on - strand at 807.233 kb on - strand at 807.256 kb on - strand at 807.278 kb on - strand at 807.278 kb on - strand at 807.311 kb on + strand at 807.454 kb on + strand, within bioA at 807.591 kb on + strand, within bioA at 807.597 kb on - strand, within bioA at 807.607 kb on - strand, within bioA at 807.720 kb on + strand, within bioA at 807.720 kb on + strand, within bioA at 807.848 kb on - strand, within bioA at 807.982 kb on - strand, within bioA at 807.995 kb on + strand, within bioA at 808.019 kb on - strand, within bioA at 808.050 kb on - strand, within bioA at 808.307 kb on + strand, within bioA at 808.337 kb on + strand, within bioA at 808.401 kb on - strand at 808.428 kb on + strand at 808.428 kb on + strand at 808.684 kb on + strand, within bioB at 808.904 kb on - strand, within bioB at 808.915 kb on + strand, within bioB at 808.949 kb on + strand, within bioB at 808.964 kb on + strand, within bioB at 809.074 kb on + strand, within bioB at 809.082 kb on - strand, within bioB at 809.217 kb on - strand, within bioB at 809.217 kb on - strand, within bioB at 809.233 kb on + strand, within bioB at 809.379 kb on + strand, within bioB
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 806,233 - ybhC b0772 0.79 +0.1 806,233 - ybhC b0772 0.79 +1.6 806,288 + ybhC b0772 0.83 +0.0 806,386 - -0.1 806,421 - +0.5 806,421 - +1.1 806,444 - +0.6 806,559 + +0.8 806,559 + +0.2 806,611 + +0.4 806,710 + ybhB b0773 0.11 +0.7 806,746 + ybhB b0773 0.19 -0.1 806,754 + ybhB b0773 0.21 +0.4 806,754 + ybhB b0773 0.21 +0.7 806,879 + ybhB b0773 0.47 -0.1 806,879 + ybhB b0773 0.47 +0.4 806,886 - ybhB b0773 0.48 -1.0 806,983 - ybhB b0773 0.69 +0.2 807,068 + ybhB b0773 0.86 +0.4 807,146 - +0.2 807,233 - -1.5 807,256 - -0.9 807,278 - -0.9 807,278 - -2.0 807,311 + -1.8 807,454 + bioA b0774 0.20 -2.5 807,591 + bioA b0774 0.31 -0.8 807,597 - bioA b0774 0.31 -3.1 807,607 - bioA b0774 0.32 -1.2 807,720 + bioA b0774 0.41 -1.0 807,720 + bioA b0774 0.41 -0.5 807,848 - bioA b0774 0.51 +0.1 807,982 - bioA b0774 0.61 -2.6 807,995 + bioA b0774 0.62 -1.8 808,019 - bioA b0774 0.64 -2.1 808,050 - bioA b0774 0.67 -1.8 808,307 + bioA b0774 0.87 -0.5 808,337 + bioA b0774 0.89 -0.9 808,401 - -1.7 808,428 + -0.5 808,428 + -2.6 808,684 + bioB b0775 0.11 -2.8 808,904 - bioB b0775 0.32 -1.3 808,915 + bioB b0775 0.33 -3.2 808,949 + bioB b0775 0.37 -3.0 808,964 + bioB b0775 0.38 -2.6 809,074 + bioB b0775 0.49 -0.3 809,082 - bioB b0775 0.49 -2.1 809,217 - bioB b0775 0.62 -1.0 809,217 - bioB b0775 0.62 -2.7 809,233 + bioB b0775 0.64 -1.3 809,379 + bioB b0775 0.78 -1.3
Or see this region's nucleotide sequence