Strain Fitness in Escherichia coli BW25113 around b0774

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntybhC and ybhB are separated by 151 nucleotidesybhB and bioA are separated by 58 nucleotidesbioA and bioB are separated by 86 nucleotides b0772: ybhC - predicted pectinesterase (NCBI), at 805,221 to 806,504 ybhC b0773: ybhB - predicted kinase inhibitor (NCBI), at 806,656 to 807,132 ybhB b0774: bioA - adenosylmethionine--8-amino-7-oxononanoate transaminase (NCBI), at 807,191 to 808,480 bioA b0775: bioB - biotin synthase (NCBI), at 808,567 to 809,607 bioB Position (kb) 807 808 809Strain fitness (log2 ratio) -3 -2 -1 0 1at 806.233 kb on - strand, within ybhCat 806.233 kb on - strand, within ybhCat 806.288 kb on + strand, within ybhCat 806.386 kb on - strandat 806.421 kb on - strandat 806.421 kb on - strandat 806.444 kb on - strandat 806.559 kb on + strandat 806.559 kb on + strandat 806.611 kb on + strandat 806.710 kb on + strand, within ybhBat 806.746 kb on + strand, within ybhBat 806.754 kb on + strand, within ybhBat 806.754 kb on + strand, within ybhBat 806.879 kb on + strand, within ybhBat 806.879 kb on + strand, within ybhBat 806.886 kb on - strand, within ybhBat 806.983 kb on - strand, within ybhBat 807.068 kb on + strand, within ybhBat 807.146 kb on - strandat 807.233 kb on - strandat 807.256 kb on - strandat 807.278 kb on - strandat 807.278 kb on - strandat 807.311 kb on + strandat 807.454 kb on + strand, within bioAat 807.591 kb on + strand, within bioAat 807.597 kb on - strand, within bioAat 807.607 kb on - strand, within bioAat 807.720 kb on + strand, within bioAat 807.720 kb on + strand, within bioAat 807.848 kb on - strand, within bioAat 807.982 kb on - strand, within bioAat 807.995 kb on + strand, within bioAat 808.019 kb on - strand, within bioAat 808.050 kb on - strand, within bioAat 808.307 kb on + strand, within bioAat 808.337 kb on + strand, within bioAat 808.401 kb on - strandat 808.428 kb on + strandat 808.428 kb on + strandat 808.684 kb on + strand, within bioBat 808.904 kb on - strand, within bioBat 808.915 kb on + strand, within bioBat 808.949 kb on + strand, within bioBat 808.964 kb on + strand, within bioBat 809.074 kb on + strand, within bioBat 809.082 kb on - strand, within bioBat 809.217 kb on - strand, within bioBat 809.217 kb on - strand, within bioBat 809.233 kb on + strand, within bioBat 809.379 kb on + strand, within bioB

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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806,233 - ybhC b0772 0.79 +0.1
806,233 - ybhC b0772 0.79 +1.6
806,288 + ybhC b0772 0.83 +0.0
806,386 - -0.1
806,421 - +0.5
806,421 - +1.1
806,444 - +0.6
806,559 + +0.8
806,559 + +0.2
806,611 + +0.4
806,710 + ybhB b0773 0.11 +0.7
806,746 + ybhB b0773 0.19 -0.1
806,754 + ybhB b0773 0.21 +0.4
806,754 + ybhB b0773 0.21 +0.7
806,879 + ybhB b0773 0.47 -0.1
806,879 + ybhB b0773 0.47 +0.4
806,886 - ybhB b0773 0.48 -1.0
806,983 - ybhB b0773 0.69 +0.2
807,068 + ybhB b0773 0.86 +0.4
807,146 - +0.2
807,233 - -1.5
807,256 - -0.9
807,278 - -0.9
807,278 - -2.0
807,311 + -1.8
807,454 + bioA b0774 0.20 -2.5
807,591 + bioA b0774 0.31 -0.8
807,597 - bioA b0774 0.31 -3.1
807,607 - bioA b0774 0.32 -1.2
807,720 + bioA b0774 0.41 -1.0
807,720 + bioA b0774 0.41 -0.5
807,848 - bioA b0774 0.51 +0.1
807,982 - bioA b0774 0.61 -2.6
807,995 + bioA b0774 0.62 -1.8
808,019 - bioA b0774 0.64 -2.1
808,050 - bioA b0774 0.67 -1.8
808,307 + bioA b0774 0.87 -0.5
808,337 + bioA b0774 0.89 -0.9
808,401 - -1.7
808,428 + -0.5
808,428 + -2.6
808,684 + bioB b0775 0.11 -2.8
808,904 - bioB b0775 0.32 -1.3
808,915 + bioB b0775 0.33 -3.2
808,949 + bioB b0775 0.37 -3.0
808,964 + bioB b0775 0.38 -2.6
809,074 + bioB b0775 0.49 -0.3
809,082 - bioB b0775 0.49 -2.1
809,217 - bioB b0775 0.62 -1.0
809,217 - bioB b0775 0.62 -2.7
809,233 + bioB b0775 0.64 -1.3
809,379 + bioB b0775 0.78 -1.3

Or see this region's nucleotide sequence