Strain Fitness in Escherichia coli BW25113 around b0063

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntaraA and araB are separated by 10 nucleotidesaraB and araC are separated by 338 nucleotides b0062: araA - L-arabinose isomerase (NCBI), at 66,835 to 68,337 araA b0063: araB - ribulokinase (NCBI), at 68,348 to 70,048 araB b0064: araC - DNA-binding transcriptional dual regulator (NCBI), at 70,387 to 71,265 araC Position (kb) 68 69 70 71Strain fitness (log2 ratio) -2 -1 0 1at 70.251 kb on + strandat 70.251 kb on + strandat 70.308 kb on + strandat 70.634 kb on + strand, within araCat 70.634 kb on + strand, within araCat 70.637 kb on - strand, within araCat 70.713 kb on - strand, within araCat 70.755 kb on - strand, within araCat 70.809 kb on + strand, within araCat 70.809 kb on + strand, within araCat 70.815 kb on - strand, within araCat 70.829 kb on - strand, within araCat 70.834 kb on - strand, within araCat 70.834 kb on - strand, within araCat 70.874 kb on + strand, within araCat 70.885 kb on + strand, within araCat 70.949 kb on - strand, within araC

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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70,251 + -1.9
70,251 + -1.7
70,308 + +0.9
70,634 + araC b0064 0.28 +0.5
70,634 + araC b0064 0.28 -1.7
70,637 - araC b0064 0.28 +0.3
70,713 - araC b0064 0.37 +0.5
70,755 - araC b0064 0.42 -0.6
70,809 + araC b0064 0.48 +0.3
70,809 + araC b0064 0.48 +0.0
70,815 - araC b0064 0.49 -0.2
70,829 - araC b0064 0.50 -0.0
70,834 - araC b0064 0.51 -0.1
70,834 - araC b0064 0.51 -0.8
70,874 + araC b0064 0.55 -1.0
70,885 + araC b0064 0.57 +0.1
70,949 - araC b0064 0.64 +0.2

Or see this region's nucleotide sequence