Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1754

Experiment: KB with Phloretin 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1752 and Psyr_1753 are separated by 80 nucleotidesPsyr_1753 and Psyr_1754 are separated by 205 nucleotidesPsyr_1754 and Psyr_1755 are separated by 18 nucleotides Psyr_1752: Psyr_1752 - transcriptional regulator, HxlR family, at 1,992,031 to 1,992,369 _1752 Psyr_1753: Psyr_1753 - conserved hypothetical protein, at 1,992,450 to 1,992,776 _1753 Psyr_1754: Psyr_1754 - Enoyl-[acyl-carrier-protein] reductase [NADH], at 1,992,982 to 1,993,776 _1754 Psyr_1755: Psyr_1755 - ABC transporter, at 1,993,795 to 1,995,405 _1755 Position (kb) 1992 1993 1994Strain fitness (log2 ratio) -2 -1 0 1at 1991.996 kb on + strandat 1991.997 kb on - strandat 1991.997 kb on - strandat 1991.997 kb on - strandat 1992.000 kb on + strandat 1992.000 kb on + strandat 1992.001 kb on - strandat 1992.014 kb on + strandat 1992.028 kb on + strandat 1992.100 kb on - strand, within Psyr_1752at 1992.172 kb on - strand, within Psyr_1752at 1992.175 kb on + strand, within Psyr_1752at 1992.175 kb on + strand, within Psyr_1752at 1992.175 kb on + strand, within Psyr_1752at 1992.175 kb on + strand, within Psyr_1752at 1992.175 kb on + strand, within Psyr_1752at 1992.175 kb on + strand, within Psyr_1752at 1992.176 kb on - strand, within Psyr_1752at 1992.176 kb on - strand, within Psyr_1752at 1992.176 kb on - strand, within Psyr_1752at 1992.304 kb on + strand, within Psyr_1752at 1992.304 kb on + strand, within Psyr_1752at 1992.339 kb on + strandat 1992.339 kb on + strandat 1992.339 kb on + strandat 1992.340 kb on - strandat 1992.340 kb on - strandat 1992.340 kb on - strandat 1992.340 kb on - strandat 1992.340 kb on - strandat 1992.340 kb on - strandat 1992.340 kb on - strandat 1992.341 kb on + strandat 1992.341 kb on + strandat 1992.341 kb on + strandat 1992.341 kb on + strandat 1992.341 kb on + strandat 1992.341 kb on + strandat 1992.342 kb on - strandat 1992.342 kb on - strandat 1992.342 kb on - strandat 1992.342 kb on - strandat 1992.342 kb on - strandat 1992.342 kb on - strandat 1992.342 kb on - strandat 1992.342 kb on - strandat 1992.342 kb on - strandat 1992.342 kb on - strandat 1992.342 kb on - strandat 1992.342 kb on - strandat 1992.456 kb on - strandat 1992.456 kb on - strandat 1992.483 kb on + strand, within Psyr_1753at 1992.483 kb on + strand, within Psyr_1753at 1992.483 kb on + strand, within Psyr_1753at 1992.483 kb on + strand, within Psyr_1753at 1992.483 kb on + strand, within Psyr_1753at 1992.484 kb on - strand, within Psyr_1753at 1992.621 kb on + strand, within Psyr_1753at 1992.621 kb on + strand, within Psyr_1753at 1992.621 kb on + strand, within Psyr_1753at 1992.621 kb on + strand, within Psyr_1753at 1992.622 kb on - strand, within Psyr_1753at 1992.622 kb on - strand, within Psyr_1753at 1992.622 kb on - strand, within Psyr_1753at 1992.622 kb on - strand, within Psyr_1753at 1992.622 kb on - strand, within Psyr_1753at 1992.622 kb on - strand, within Psyr_1753at 1992.627 kb on + strand, within Psyr_1753at 1992.627 kb on + strand, within Psyr_1753at 1992.628 kb on - strand, within Psyr_1753at 1992.628 kb on - strand, within Psyr_1753at 1992.629 kb on + strand, within Psyr_1753at 1992.629 kb on + strand, within Psyr_1753at 1992.630 kb on - strand, within Psyr_1753at 1992.630 kb on - strand, within Psyr_1753at 1992.682 kb on + strand, within Psyr_1753at 1992.682 kb on + strand, within Psyr_1753at 1992.683 kb on - strand, within Psyr_1753at 1992.831 kb on - strandat 1992.831 kb on - strandat 1992.938 kb on + strandat 1992.939 kb on - strandat 1993.846 kb on - strandat 1993.846 kb on - strandat 1993.848 kb on - strandat 1993.974 kb on - strand, within Psyr_1755at 1993.974 kb on - strand, within Psyr_1755at 1993.974 kb on - strand, within Psyr_1755at 1993.974 kb on - strand, within Psyr_1755at 1993.986 kb on - strand, within Psyr_1755at 1993.986 kb on - strand, within Psyr_1755at 1993.986 kb on - strand, within Psyr_1755at 1994.145 kb on - strand, within Psyr_1755at 1994.360 kb on - strand, within Psyr_1755at 1994.380 kb on + strand, within Psyr_1755at 1994.381 kb on - strand, within Psyr_1755at 1994.492 kb on - strand, within Psyr_1755at 1994.722 kb on + strand, within Psyr_1755at 1994.722 kb on + strand, within Psyr_1755at 1994.734 kb on + strand, within Psyr_1755at 1994.735 kb on - strand, within Psyr_1755at 1994.735 kb on - strand, within Psyr_1755

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Phloretin 125 ug/ml
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1,991,996 + -1.1
1,991,997 - -0.4
1,991,997 - +1.5
1,991,997 - +0.7
1,992,000 + +0.3
1,992,000 + +1.1
1,992,001 - +0.3
1,992,014 + +0.1
1,992,028 + +0.2
1,992,100 - Psyr_1752 0.20 +0.6
1,992,172 - Psyr_1752 0.42 +1.4
1,992,175 + Psyr_1752 0.42 -0.4
1,992,175 + Psyr_1752 0.42 -0.8
1,992,175 + Psyr_1752 0.42 -0.1
1,992,175 + Psyr_1752 0.42 -0.1
1,992,175 + Psyr_1752 0.42 -0.2
1,992,175 + Psyr_1752 0.42 -1.3
1,992,176 - Psyr_1752 0.43 +0.1
1,992,176 - Psyr_1752 0.43 -0.3
1,992,176 - Psyr_1752 0.43 -0.8
1,992,304 + Psyr_1752 0.81 +0.9
1,992,304 + Psyr_1752 0.81 -0.3
1,992,339 + +0.0
1,992,339 + -0.3
1,992,339 + -0.4
1,992,340 - -0.0
1,992,340 - -0.3
1,992,340 - +0.0
1,992,340 - -0.0
1,992,340 - +0.3
1,992,340 - +0.8
1,992,340 - -1.6
1,992,341 + +0.0
1,992,341 + +0.4
1,992,341 + +0.7
1,992,341 + +0.1
1,992,341 + +0.2
1,992,341 + +0.0
1,992,342 - +0.1
1,992,342 - -0.3
1,992,342 - +0.2
1,992,342 - +0.4
1,992,342 - -0.3
1,992,342 - -0.5
1,992,342 - +1.3
1,992,342 - -0.0
1,992,342 - +1.2
1,992,342 - +1.3
1,992,342 - -0.4
1,992,342 - +1.5
1,992,456 - +0.0
1,992,456 - +0.6
1,992,483 + Psyr_1753 0.10 +0.4
1,992,483 + Psyr_1753 0.10 +0.3
1,992,483 + Psyr_1753 0.10 -0.3
1,992,483 + Psyr_1753 0.10 +0.0
1,992,483 + Psyr_1753 0.10 +0.7
1,992,484 - Psyr_1753 0.10 +1.1
1,992,621 + Psyr_1753 0.52 +0.5
1,992,621 + Psyr_1753 0.52 -0.4
1,992,621 + Psyr_1753 0.52 -1.8
1,992,621 + Psyr_1753 0.52 +0.4
1,992,622 - Psyr_1753 0.53 +0.1
1,992,622 - Psyr_1753 0.53 -0.5
1,992,622 - Psyr_1753 0.53 -0.2
1,992,622 - Psyr_1753 0.53 +0.4
1,992,622 - Psyr_1753 0.53 -1.1
1,992,622 - Psyr_1753 0.53 +0.9
1,992,627 + Psyr_1753 0.54 -0.0
1,992,627 + Psyr_1753 0.54 +0.2
1,992,628 - Psyr_1753 0.54 -0.7
1,992,628 - Psyr_1753 0.54 -0.3
1,992,629 + Psyr_1753 0.55 +0.0
1,992,629 + Psyr_1753 0.55 +0.7
1,992,630 - Psyr_1753 0.55 -0.8
1,992,630 - Psyr_1753 0.55 +0.2
1,992,682 + Psyr_1753 0.71 -0.3
1,992,682 + Psyr_1753 0.71 -0.4
1,992,683 - Psyr_1753 0.71 -0.3
1,992,831 - -0.1
1,992,831 - +0.3
1,992,938 + +0.7
1,992,939 - -1.6
1,993,846 - +1.5
1,993,846 - -2.3
1,993,848 - -0.5
1,993,974 - Psyr_1755 0.11 -0.3
1,993,974 - Psyr_1755 0.11 -0.5
1,993,974 - Psyr_1755 0.11 +0.5
1,993,974 - Psyr_1755 0.11 -2.1
1,993,986 - Psyr_1755 0.12 -0.3
1,993,986 - Psyr_1755 0.12 -0.3
1,993,986 - Psyr_1755 0.12 -0.0
1,994,145 - Psyr_1755 0.22 +0.2
1,994,360 - Psyr_1755 0.35 -0.9
1,994,380 + Psyr_1755 0.36 -0.3
1,994,381 - Psyr_1755 0.36 -0.3
1,994,492 - Psyr_1755 0.43 -0.8
1,994,722 + Psyr_1755 0.58 -1.6
1,994,722 + Psyr_1755 0.58 -1.8
1,994,734 + Psyr_1755 0.58 +0.7
1,994,735 - Psyr_1755 0.58 -0.2
1,994,735 - Psyr_1755 0.58 -0.3

Or see this region's nucleotide sequence