Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1440

Experiment: KB with Phloretin 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1439 and Psyr_1440 are separated by 138 nucleotidesPsyr_1440 and Psyr_1441 overlap by 4 nucleotidesPsyr_1441 and Psyr_1442 overlap by 4 nucleotides Psyr_1439: Psyr_1439 - Beta-lactamase, at 1,628,265 to 1,629,257 _1439 Psyr_1440: Psyr_1440 - DSBA oxidoreductase, at 1,629,396 to 1,630,082 _1440 Psyr_1441: Psyr_1441 - conserved hypothetical protein, at 1,630,079 to 1,630,378 _1441 Psyr_1442: Psyr_1442 - conserved hypothetical protein, at 1,630,375 to 1,633,383 _1442 Position (kb) 1629 1630 1631Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1628.471 kb on - strand, within Psyr_1439at 1628.550 kb on + strand, within Psyr_1439at 1628.550 kb on + strand, within Psyr_1439at 1628.551 kb on - strand, within Psyr_1439at 1628.702 kb on + strand, within Psyr_1439at 1628.710 kb on - strand, within Psyr_1439at 1628.731 kb on + strand, within Psyr_1439at 1628.732 kb on - strand, within Psyr_1439at 1628.740 kb on + strand, within Psyr_1439at 1628.740 kb on + strand, within Psyr_1439at 1628.754 kb on + strand, within Psyr_1439at 1628.791 kb on + strand, within Psyr_1439at 1628.796 kb on - strand, within Psyr_1439at 1628.823 kb on - strand, within Psyr_1439at 1628.823 kb on - strand, within Psyr_1439at 1628.835 kb on - strand, within Psyr_1439at 1628.883 kb on - strand, within Psyr_1439at 1628.921 kb on - strand, within Psyr_1439at 1628.923 kb on + strand, within Psyr_1439at 1628.923 kb on + strand, within Psyr_1439at 1628.924 kb on - strand, within Psyr_1439at 1628.924 kb on - strand, within Psyr_1439at 1628.924 kb on - strand, within Psyr_1439at 1628.989 kb on - strand, within Psyr_1439at 1628.997 kb on - strand, within Psyr_1439at 1628.999 kb on - strand, within Psyr_1439at 1629.049 kb on + strand, within Psyr_1439at 1629.108 kb on - strand, within Psyr_1439at 1629.140 kb on + strand, within Psyr_1439at 1629.148 kb on - strand, within Psyr_1439at 1629.177 kb on - strandat 1629.177 kb on - strandat 1629.199 kb on + strandat 1629.208 kb on - strandat 1629.230 kb on + strandat 1629.269 kb on - strandat 1629.285 kb on + strandat 1629.285 kb on + strandat 1629.285 kb on + strandat 1629.320 kb on + strandat 1629.324 kb on + strandat 1629.325 kb on - strandat 1629.397 kb on + strandat 1629.397 kb on + strandat 1629.397 kb on + strandat 1629.398 kb on - strandat 1629.398 kb on - strandat 1629.398 kb on - strandat 1629.398 kb on - strandat 1629.401 kb on + strandat 1629.401 kb on + strandat 1629.596 kb on + strand, within Psyr_1440at 1629.671 kb on + strand, within Psyr_1440at 1629.754 kb on + strand, within Psyr_1440at 1629.754 kb on + strand, within Psyr_1440at 1629.755 kb on - strand, within Psyr_1440at 1629.755 kb on - strand, within Psyr_1440at 1629.851 kb on - strand, within Psyr_1440at 1629.884 kb on - strand, within Psyr_1440at 1629.919 kb on + strand, within Psyr_1440at 1629.935 kb on + strand, within Psyr_1440at 1629.935 kb on + strand, within Psyr_1440at 1629.935 kb on + strand, within Psyr_1440at 1629.935 kb on + strand, within Psyr_1440at 1629.936 kb on - strand, within Psyr_1440at 1629.936 kb on - strand, within Psyr_1440at 1629.989 kb on + strand, within Psyr_1440at 1629.989 kb on + strand, within Psyr_1440at 1629.989 kb on + strand, within Psyr_1440at 1629.990 kb on - strand, within Psyr_1440at 1629.990 kb on - strand, within Psyr_1440at 1630.026 kb on - strandat 1630.233 kb on - strand, within Psyr_1441at 1630.256 kb on + strand, within Psyr_1441at 1630.256 kb on + strand, within Psyr_1441at 1630.256 kb on + strand, within Psyr_1441at 1630.256 kb on + strand, within Psyr_1441at 1630.256 kb on + strand, within Psyr_1441at 1630.256 kb on + strand, within Psyr_1441at 1630.257 kb on - strand, within Psyr_1441at 1630.257 kb on - strand, within Psyr_1441at 1630.257 kb on - strand, within Psyr_1441at 1630.257 kb on - strand, within Psyr_1441at 1630.257 kb on - strand, within Psyr_1441at 1630.257 kb on - strand, within Psyr_1441at 1630.257 kb on - strand, within Psyr_1441at 1630.257 kb on - strand, within Psyr_1441at 1630.326 kb on - strand, within Psyr_1441at 1630.326 kb on - strand, within Psyr_1441at 1630.326 kb on - strand, within Psyr_1441at 1630.326 kb on - strand, within Psyr_1441at 1630.326 kb on - strand, within Psyr_1441at 1630.413 kb on + strandat 1630.413 kb on + strandat 1630.413 kb on + strandat 1630.413 kb on + strandat 1630.413 kb on + strandat 1630.413 kb on + strandat 1630.413 kb on + strandat 1630.414 kb on - strandat 1630.414 kb on - strandat 1630.414 kb on - strandat 1630.414 kb on - strandat 1630.414 kb on - strandat 1630.414 kb on - strandat 1630.414 kb on - strandat 1630.414 kb on - strandat 1630.414 kb on - strandat 1630.414 kb on - strandat 1630.431 kb on + strandat 1630.431 kb on + strandat 1630.512 kb on - strandat 1630.512 kb on - strandat 1630.622 kb on + strandat 1630.622 kb on + strandat 1630.623 kb on - strandat 1630.623 kb on - strandat 1630.623 kb on - strandat 1630.626 kb on + strandat 1630.846 kb on - strand, within Psyr_1442at 1630.850 kb on + strand, within Psyr_1442at 1630.850 kb on + strand, within Psyr_1442at 1630.850 kb on + strand, within Psyr_1442at 1630.851 kb on - strand, within Psyr_1442at 1630.851 kb on - strand, within Psyr_1442at 1630.851 kb on - strand, within Psyr_1442at 1630.875 kb on + strand, within Psyr_1442at 1630.875 kb on + strand, within Psyr_1442at 1630.922 kb on + strand, within Psyr_1442at 1630.922 kb on + strand, within Psyr_1442at 1630.922 kb on + strand, within Psyr_1442at 1630.923 kb on - strand, within Psyr_1442at 1630.923 kb on - strand, within Psyr_1442at 1630.923 kb on - strand, within Psyr_1442at 1630.923 kb on - strand, within Psyr_1442at 1630.923 kb on - strand, within Psyr_1442at 1630.939 kb on + strand, within Psyr_1442at 1630.939 kb on + strand, within Psyr_1442at 1630.940 kb on - strand, within Psyr_1442at 1630.970 kb on + strand, within Psyr_1442at 1630.970 kb on + strand, within Psyr_1442at 1630.970 kb on + strand, within Psyr_1442at 1630.971 kb on - strand, within Psyr_1442at 1630.971 kb on - strand, within Psyr_1442at 1630.971 kb on - strand, within Psyr_1442at 1630.971 kb on - strand, within Psyr_1442at 1630.971 kb on - strand, within Psyr_1442at 1630.971 kb on - strand, within Psyr_1442at 1630.994 kb on + strand, within Psyr_1442at 1630.995 kb on - strand, within Psyr_1442at 1631.009 kb on + strand, within Psyr_1442at 1631.009 kb on + strand, within Psyr_1442at 1631.009 kb on + strand, within Psyr_1442at 1631.009 kb on + strand, within Psyr_1442at 1631.010 kb on - strand, within Psyr_1442at 1631.010 kb on - strand, within Psyr_1442at 1631.010 kb on - strand, within Psyr_1442at 1631.010 kb on - strand, within Psyr_1442at 1631.055 kb on + strand, within Psyr_1442

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Phloretin 125 ug/ml
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1,628,471 - Psyr_1439 0.21 -0.2
1,628,550 + Psyr_1439 0.29 -0.3
1,628,550 + Psyr_1439 0.29 -1.1
1,628,551 - Psyr_1439 0.29 -0.2
1,628,702 + Psyr_1439 0.44 +0.8
1,628,710 - Psyr_1439 0.45 -1.6
1,628,731 + Psyr_1439 0.47 +0.4
1,628,732 - Psyr_1439 0.47 -1.5
1,628,740 + Psyr_1439 0.48 +0.3
1,628,740 + Psyr_1439 0.48 +0.5
1,628,754 + Psyr_1439 0.49 -0.7
1,628,791 + Psyr_1439 0.53 -1.5
1,628,796 - Psyr_1439 0.53 -0.5
1,628,823 - Psyr_1439 0.56 -0.6
1,628,823 - Psyr_1439 0.56 +2.3
1,628,835 - Psyr_1439 0.57 +0.1
1,628,883 - Psyr_1439 0.62 +0.2
1,628,921 - Psyr_1439 0.66 -1.5
1,628,923 + Psyr_1439 0.66 -0.7
1,628,923 + Psyr_1439 0.66 -0.2
1,628,924 - Psyr_1439 0.66 -1.0
1,628,924 - Psyr_1439 0.66 +0.1
1,628,924 - Psyr_1439 0.66 -2.1
1,628,989 - Psyr_1439 0.73 -1.2
1,628,997 - Psyr_1439 0.74 -1.4
1,628,999 - Psyr_1439 0.74 +0.0
1,629,049 + Psyr_1439 0.79 -2.1
1,629,108 - Psyr_1439 0.85 +0.8
1,629,140 + Psyr_1439 0.88 -1.1
1,629,148 - Psyr_1439 0.89 -1.5
1,629,177 - +0.3
1,629,177 - -0.7
1,629,199 + -0.7
1,629,208 - -1.5
1,629,230 + -1.2
1,629,269 - -2.5
1,629,285 + -1.1
1,629,285 + -1.0
1,629,285 + -0.3
1,629,320 + -0.7
1,629,324 + -0.3
1,629,325 - -2.1
1,629,397 + +1.3
1,629,397 + -3.6
1,629,397 + -0.5
1,629,398 - -0.7
1,629,398 - -1.7
1,629,398 - +0.4
1,629,398 - -0.3
1,629,401 + -0.0
1,629,401 + +0.6
1,629,596 + Psyr_1440 0.29 -0.6
1,629,671 + Psyr_1440 0.40 -0.5
1,629,754 + Psyr_1440 0.52 +0.8
1,629,754 + Psyr_1440 0.52 +1.0
1,629,755 - Psyr_1440 0.52 +0.3
1,629,755 - Psyr_1440 0.52 -2.0
1,629,851 - Psyr_1440 0.66 -0.3
1,629,884 - Psyr_1440 0.71 +1.0
1,629,919 + Psyr_1440 0.76 +0.6
1,629,935 + Psyr_1440 0.78 +1.4
1,629,935 + Psyr_1440 0.78 -0.2
1,629,935 + Psyr_1440 0.78 -0.5
1,629,935 + Psyr_1440 0.78 +1.4
1,629,936 - Psyr_1440 0.79 -0.2
1,629,936 - Psyr_1440 0.79 -1.6
1,629,989 + Psyr_1440 0.86 +1.0
1,629,989 + Psyr_1440 0.86 -0.0
1,629,989 + Psyr_1440 0.86 +1.0
1,629,990 - Psyr_1440 0.86 -0.1
1,629,990 - Psyr_1440 0.86 -0.7
1,630,026 - -1.2
1,630,233 - Psyr_1441 0.51 -0.6
1,630,256 + Psyr_1441 0.59 -1.7
1,630,256 + Psyr_1441 0.59 -1.0
1,630,256 + Psyr_1441 0.59 +1.1
1,630,256 + Psyr_1441 0.59 -0.5
1,630,256 + Psyr_1441 0.59 +0.8
1,630,256 + Psyr_1441 0.59 -1.6
1,630,257 - Psyr_1441 0.59 -0.2
1,630,257 - Psyr_1441 0.59 -0.0
1,630,257 - Psyr_1441 0.59 +1.2
1,630,257 - Psyr_1441 0.59 -0.3
1,630,257 - Psyr_1441 0.59 -0.2
1,630,257 - Psyr_1441 0.59 +2.2
1,630,257 - Psyr_1441 0.59 +1.8
1,630,257 - Psyr_1441 0.59 +2.2
1,630,326 - Psyr_1441 0.82 +1.7
1,630,326 - Psyr_1441 0.82 +0.7
1,630,326 - Psyr_1441 0.82 -0.3
1,630,326 - Psyr_1441 0.82 +0.2
1,630,326 - Psyr_1441 0.82 -0.7
1,630,413 + +0.3
1,630,413 + +0.8
1,630,413 + -0.7
1,630,413 + +0.6
1,630,413 + -1.4
1,630,413 + +2.0
1,630,413 + +0.6
1,630,414 - +0.7
1,630,414 - -0.2
1,630,414 - -2.5
1,630,414 - -0.3
1,630,414 - -2.5
1,630,414 - +0.8
1,630,414 - -0.0
1,630,414 - -0.8
1,630,414 - -0.7
1,630,414 - -1.2
1,630,431 + -1.0
1,630,431 + +0.8
1,630,512 - +0.5
1,630,512 - -0.5
1,630,622 + +0.5
1,630,622 + +0.4
1,630,623 - -0.1
1,630,623 - -0.3
1,630,623 - +0.6
1,630,626 + -1.7
1,630,846 - Psyr_1442 0.16 -0.7
1,630,850 + Psyr_1442 0.16 +0.7
1,630,850 + Psyr_1442 0.16 -1.9
1,630,850 + Psyr_1442 0.16 -0.2
1,630,851 - Psyr_1442 0.16 -0.9
1,630,851 - Psyr_1442 0.16 -0.3
1,630,851 - Psyr_1442 0.16 -0.2
1,630,875 + Psyr_1442 0.17 +0.4
1,630,875 + Psyr_1442 0.17 -0.3
1,630,922 + Psyr_1442 0.18 +0.8
1,630,922 + Psyr_1442 0.18 -0.7
1,630,922 + Psyr_1442 0.18 -2.2
1,630,923 - Psyr_1442 0.18 +0.4
1,630,923 - Psyr_1442 0.18 -1.2
1,630,923 - Psyr_1442 0.18 -3.8
1,630,923 - Psyr_1442 0.18 -1.5
1,630,923 - Psyr_1442 0.18 -2.1
1,630,939 + Psyr_1442 0.19 -0.9
1,630,939 + Psyr_1442 0.19 -0.7
1,630,940 - Psyr_1442 0.19 -1.2
1,630,970 + Psyr_1442 0.20 +0.8
1,630,970 + Psyr_1442 0.20 -0.2
1,630,970 + Psyr_1442 0.20 -1.4
1,630,971 - Psyr_1442 0.20 -1.9
1,630,971 - Psyr_1442 0.20 -2.6
1,630,971 - Psyr_1442 0.20 -0.7
1,630,971 - Psyr_1442 0.20 -1.3
1,630,971 - Psyr_1442 0.20 +0.2
1,630,971 - Psyr_1442 0.20 -0.6
1,630,994 + Psyr_1442 0.21 -0.2
1,630,995 - Psyr_1442 0.21 +0.3
1,631,009 + Psyr_1442 0.21 +0.4
1,631,009 + Psyr_1442 0.21 +1.1
1,631,009 + Psyr_1442 0.21 +0.3
1,631,009 + Psyr_1442 0.21 +0.7
1,631,010 - Psyr_1442 0.21 +0.8
1,631,010 - Psyr_1442 0.21 -2.5
1,631,010 - Psyr_1442 0.21 -1.2
1,631,010 - Psyr_1442 0.21 +0.1
1,631,055 + Psyr_1442 0.23 -1.0

Or see this region's nucleotide sequence