Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1091

Experiment: KB with Phloretin 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1088 and Psyr_1089 are separated by 43 nucleotidesPsyr_1089 and Psyr_1090 are separated by 7 nucleotidesPsyr_1090 and Psyr_1091 are separated by 57 nucleotidesPsyr_1091 and Psyr_1092 are separated by 319 nucleotides Psyr_1088: Psyr_1088 - CDS, at 1,230,953 to 1,231,684 _1088 Psyr_1089: Psyr_1089 - conserved hypothetical protein, at 1,231,728 to 1,232,162 _1089 Psyr_1090: Psyr_1090 - DNA polymerase III, chi subunit, at 1,232,170 to 1,232,598 _1090 Psyr_1091: Psyr_1091 - aminopeptidase A, Metallo peptidase, MEROPS family M17, at 1,232,656 to 1,234,146 _1091 Psyr_1092: Psyr_1092 - permease YjgP/YjgQ, at 1,234,466 to 1,235,593 _1092 Position (kb) 1232 1233 1234 1235Strain fitness (log2 ratio) -2 -1 0 1 2at 1231.669 kb on - strandat 1231.694 kb on + strandat 1231.694 kb on + strandat 1231.694 kb on + strandat 1231.694 kb on + strandat 1231.694 kb on + strandat 1231.695 kb on - strandat 1231.695 kb on - strandat 1231.695 kb on - strandat 1231.695 kb on - strandat 1231.951 kb on - strand, within Psyr_1089at 1232.156 kb on + strandat 1232.219 kb on + strand, within Psyr_1090at 1232.251 kb on + strand, within Psyr_1090at 1232.252 kb on - strand, within Psyr_1090at 1232.252 kb on - strand, within Psyr_1090at 1232.492 kb on + strand, within Psyr_1090at 1232.579 kb on + strandat 1232.579 kb on + strandat 1232.579 kb on + strandat 1232.579 kb on + strandat 1232.580 kb on - strandat 1232.580 kb on - strandat 1232.580 kb on - strandat 1232.580 kb on - strandat 1232.580 kb on - strandat 1232.580 kb on - strandat 1232.580 kb on - strandat 1232.657 kb on + strandat 1232.660 kb on - strandat 1232.777 kb on + strandat 1232.985 kb on + strand, within Psyr_1091at 1232.986 kb on - strand, within Psyr_1091at 1233.065 kb on + strand, within Psyr_1091at 1233.395 kb on + strand, within Psyr_1091at 1233.395 kb on + strand, within Psyr_1091at 1233.548 kb on + strand, within Psyr_1091at 1233.549 kb on - strand, within Psyr_1091at 1233.549 kb on - strand, within Psyr_1091at 1233.734 kb on + strand, within Psyr_1091at 1233.734 kb on + strand, within Psyr_1091at 1233.734 kb on + strand, within Psyr_1091at 1233.734 kb on + strand, within Psyr_1091at 1233.734 kb on + strand, within Psyr_1091at 1233.734 kb on + strand, within Psyr_1091at 1233.735 kb on - strand, within Psyr_1091at 1233.735 kb on - strand, within Psyr_1091at 1233.779 kb on + strand, within Psyr_1091at 1233.779 kb on + strand, within Psyr_1091at 1233.779 kb on + strand, within Psyr_1091at 1233.780 kb on - strand, within Psyr_1091at 1233.780 kb on - strand, within Psyr_1091at 1233.780 kb on - strand, within Psyr_1091at 1234.131 kb on + strandat 1234.131 kb on + strandat 1234.132 kb on - strandat 1234.181 kb on - strandat 1234.181 kb on - strandat 1234.181 kb on - strandat 1234.181 kb on - strandat 1234.192 kb on - strandat 1234.299 kb on + strandat 1234.299 kb on + strandat 1234.299 kb on + strandat 1234.299 kb on + strandat 1234.299 kb on + strandat 1234.300 kb on - strandat 1234.310 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Phloretin 125 ug/ml
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1,231,669 - -0.4
1,231,694 + +0.9
1,231,694 + +0.7
1,231,694 + +0.8
1,231,694 + -1.2
1,231,694 + +0.9
1,231,695 - +1.5
1,231,695 - -0.2
1,231,695 - -0.1
1,231,695 - +0.3
1,231,951 - Psyr_1089 0.51 -0.1
1,232,156 + -0.2
1,232,219 + Psyr_1090 0.11 +0.4
1,232,251 + Psyr_1090 0.19 -0.7
1,232,252 - Psyr_1090 0.19 +0.6
1,232,252 - Psyr_1090 0.19 -1.4
1,232,492 + Psyr_1090 0.75 +1.1
1,232,579 + +1.0
1,232,579 + -0.0
1,232,579 + -1.7
1,232,579 + -0.7
1,232,580 - -0.4
1,232,580 - +0.6
1,232,580 - -1.2
1,232,580 - +0.0
1,232,580 - -0.2
1,232,580 - +0.8
1,232,580 - +0.3
1,232,657 + -1.2
1,232,660 - -0.6
1,232,777 + +0.3
1,232,985 + Psyr_1091 0.22 -0.8
1,232,986 - Psyr_1091 0.22 +0.3
1,233,065 + Psyr_1091 0.27 -2.4
1,233,395 + Psyr_1091 0.50 +0.3
1,233,395 + Psyr_1091 0.50 +0.0
1,233,548 + Psyr_1091 0.60 -1.0
1,233,549 - Psyr_1091 0.60 -0.5
1,233,549 - Psyr_1091 0.60 -0.2
1,233,734 + Psyr_1091 0.72 +0.2
1,233,734 + Psyr_1091 0.72 -1.7
1,233,734 + Psyr_1091 0.72 -1.2
1,233,734 + Psyr_1091 0.72 -0.0
1,233,734 + Psyr_1091 0.72 +0.8
1,233,734 + Psyr_1091 0.72 -0.2
1,233,735 - Psyr_1091 0.72 -1.7
1,233,735 - Psyr_1091 0.72 -0.9
1,233,779 + Psyr_1091 0.75 +0.1
1,233,779 + Psyr_1091 0.75 -0.8
1,233,779 + Psyr_1091 0.75 +0.5
1,233,780 - Psyr_1091 0.75 -1.8
1,233,780 - Psyr_1091 0.75 -0.6
1,233,780 - Psyr_1091 0.75 -1.0
1,234,131 + -0.1
1,234,131 + +0.2
1,234,132 - +0.1
1,234,181 - +0.1
1,234,181 - +0.6
1,234,181 - -0.8
1,234,181 - -0.8
1,234,192 - -0.7
1,234,299 + +0.2
1,234,299 + +0.1
1,234,299 + +0.8
1,234,299 + +1.8
1,234,299 + -1.1
1,234,300 - +0.8
1,234,310 + +1.4

Or see this region's nucleotide sequence