Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1018

Experiment: KB with Phloretin 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1016 and Psyr_1017 are separated by 113 nucleotidesPsyr_1017 and Psyr_1018 overlap by 8 nucleotidesPsyr_1018 and Psyr_1019 are separated by 43 nucleotidesPsyr_1019 and Psyr_1020 overlap by 1 nucleotidesPsyr_1020 and Psyr_1021 are separated by 21 nucleotides Psyr_1016: Psyr_1016 - Thioredoxin reductase, at 1,149,858 to 1,150,820 _1016 Psyr_1017: Psyr_1017 - type III effector HopJ1, at 1,150,934 to 1,151,275 _1017 Psyr_1018: Psyr_1018 - Protein of unknown function DUF1244, at 1,151,268 to 1,151,567 _1018 Psyr_1019: Psyr_1019 - Dihydroneopterin aldolase, at 1,151,611 to 1,151,982 _1019 Psyr_1020: Psyr_1020 - GTP cyclohydrolase I, at 1,151,982 to 1,152,545 _1020 Psyr_1021: Psyr_1021 - Short-chain dehydrogenase/reductase SDR, at 1,152,567 to 1,153,277 _1021 Position (kb) 1151 1152Strain fitness (log2 ratio) -2 -1 0 1at 1150.810 kb on + strandat 1150.810 kb on + strandat 1150.810 kb on + strandat 1150.889 kb on + strandat 1150.889 kb on + strandat 1150.890 kb on - strandat 1150.890 kb on - strandat 1150.890 kb on - strandat 1150.891 kb on + strandat 1150.891 kb on + strandat 1150.891 kb on + strandat 1150.891 kb on + strandat 1150.891 kb on + strandat 1150.891 kb on + strandat 1150.891 kb on + strandat 1150.891 kb on + strandat 1150.891 kb on + strandat 1150.891 kb on + strandat 1150.892 kb on - strandat 1150.892 kb on - strandat 1150.892 kb on - strandat 1150.892 kb on - strandat 1151.185 kb on - strand, within Psyr_1017at 1151.428 kb on + strand, within Psyr_1018at 1151.428 kb on + strand, within Psyr_1018at 1151.428 kb on + strand, within Psyr_1018at 1151.428 kb on + strand, within Psyr_1018at 1151.428 kb on + strand, within Psyr_1018at 1151.428 kb on + strand, within Psyr_1018at 1151.428 kb on + strand, within Psyr_1018at 1151.429 kb on - strand, within Psyr_1018at 1151.429 kb on - strand, within Psyr_1018at 1151.429 kb on - strand, within Psyr_1018at 1151.603 kb on + strandat 1151.604 kb on - strandat 1151.604 kb on - strandat 1151.690 kb on + strand, within Psyr_1019at 1151.690 kb on + strand, within Psyr_1019at 1151.690 kb on + strand, within Psyr_1019at 1151.690 kb on + strand, within Psyr_1019at 1151.855 kb on + strand, within Psyr_1019at 1151.856 kb on - strand, within Psyr_1019at 1152.065 kb on + strand, within Psyr_1020at 1152.065 kb on + strand, within Psyr_1020at 1152.065 kb on + strand, within Psyr_1020at 1152.065 kb on + strand, within Psyr_1020at 1152.065 kb on + strand, within Psyr_1020at 1152.065 kb on + strand, within Psyr_1020at 1152.065 kb on + strand, within Psyr_1020at 1152.066 kb on - strand, within Psyr_1020at 1152.066 kb on - strand, within Psyr_1020at 1152.066 kb on - strand, within Psyr_1020at 1152.066 kb on - strand, within Psyr_1020at 1152.066 kb on - strand, within Psyr_1020at 1152.066 kb on - strand, within Psyr_1020at 1152.066 kb on - strand, within Psyr_1020at 1152.277 kb on + strand, within Psyr_1020at 1152.297 kb on + strand, within Psyr_1020at 1152.418 kb on + strand, within Psyr_1020at 1152.418 kb on + strand, within Psyr_1020at 1152.433 kb on + strand, within Psyr_1020at 1152.433 kb on + strand, within Psyr_1020at 1152.433 kb on + strand, within Psyr_1020at 1152.433 kb on + strand, within Psyr_1020at 1152.434 kb on - strand, within Psyr_1020

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Phloretin 125 ug/ml
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1,150,810 + -0.3
1,150,810 + +0.2
1,150,810 + -0.0
1,150,889 + -0.5
1,150,889 + -2.0
1,150,890 - -0.0
1,150,890 - -0.0
1,150,890 - -0.3
1,150,891 + -0.6
1,150,891 + -1.0
1,150,891 + -2.0
1,150,891 + +0.5
1,150,891 + -0.4
1,150,891 + +0.2
1,150,891 + -0.1
1,150,891 + -0.4
1,150,891 + +0.5
1,150,891 + -1.3
1,150,892 - -0.8
1,150,892 - +0.3
1,150,892 - -0.0
1,150,892 - -0.6
1,151,185 - Psyr_1017 0.73 -0.3
1,151,428 + Psyr_1018 0.53 +0.8
1,151,428 + Psyr_1018 0.53 -0.8
1,151,428 + Psyr_1018 0.53 -0.2
1,151,428 + Psyr_1018 0.53 +0.1
1,151,428 + Psyr_1018 0.53 +1.7
1,151,428 + Psyr_1018 0.53 -0.4
1,151,428 + Psyr_1018 0.53 +0.3
1,151,429 - Psyr_1018 0.54 +0.5
1,151,429 - Psyr_1018 0.54 -0.0
1,151,429 - Psyr_1018 0.54 +0.8
1,151,603 + +1.2
1,151,604 - +0.8
1,151,604 - +0.5
1,151,690 + Psyr_1019 0.21 -0.6
1,151,690 + Psyr_1019 0.21 +0.4
1,151,690 + Psyr_1019 0.21 +0.4
1,151,690 + Psyr_1019 0.21 +0.7
1,151,855 + Psyr_1019 0.66 -0.4
1,151,856 - Psyr_1019 0.66 +0.8
1,152,065 + Psyr_1020 0.15 -0.9
1,152,065 + Psyr_1020 0.15 -2.5
1,152,065 + Psyr_1020 0.15 -0.6
1,152,065 + Psyr_1020 0.15 +0.0
1,152,065 + Psyr_1020 0.15 +0.4
1,152,065 + Psyr_1020 0.15 -0.9
1,152,065 + Psyr_1020 0.15 -0.2
1,152,066 - Psyr_1020 0.15 -0.4
1,152,066 - Psyr_1020 0.15 -0.7
1,152,066 - Psyr_1020 0.15 +0.1
1,152,066 - Psyr_1020 0.15 -1.4
1,152,066 - Psyr_1020 0.15 +0.6
1,152,066 - Psyr_1020 0.15 +0.5
1,152,066 - Psyr_1020 0.15 +0.7
1,152,277 + Psyr_1020 0.52 +0.1
1,152,297 + Psyr_1020 0.56 -2.2
1,152,418 + Psyr_1020 0.77 -0.4
1,152,418 + Psyr_1020 0.77 -0.3
1,152,433 + Psyr_1020 0.80 -0.6
1,152,433 + Psyr_1020 0.80 +0.8
1,152,433 + Psyr_1020 0.80 +0.2
1,152,433 + Psyr_1020 0.80 -0.4
1,152,434 - Psyr_1020 0.80 -0.5

Or see this region's nucleotide sequence