Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0279

Experiment: KB with Phloretin 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0277 and Psyr_0278 overlap by 8 nucleotidesPsyr_0278 and Psyr_0279 are separated by 38 nucleotidesPsyr_0279 and Psyr_0280 are separated by 152 nucleotides Psyr_0277: Psyr_0277 - ABC transporter, at 295,000 to 295,788 _0277 Psyr_0278: Psyr_0278 - ABC-3, at 295,781 to 296,569 _0278 Psyr_0279: Psyr_0279 - lipoprotein, putative, at 296,608 to 297,324 _0279 Psyr_0280: Psyr_0280 - Catalase, at 297,477 to 299,627 _0280 Position (kb) 296 297 298Strain fitness (log2 ratio) -2 -1 0 1 2at 295.681 kb on + strand, within Psyr_0277at 295.681 kb on + strand, within Psyr_0277at 295.682 kb on - strand, within Psyr_0277at 295.682 kb on - strand, within Psyr_0277at 295.682 kb on - strand, within Psyr_0277at 295.682 kb on - strand, within Psyr_0277at 295.776 kb on + strandat 295.776 kb on + strandat 295.777 kb on - strandat 295.777 kb on - strandat 295.777 kb on - strandat 295.777 kb on - strandat 295.777 kb on - strandat 295.799 kb on + strandat 295.799 kb on + strandat 295.799 kb on + strandat 295.799 kb on + strandat 295.799 kb on + strandat 295.799 kb on + strandat 295.799 kb on + strandat 295.799 kb on + strandat 295.800 kb on - strandat 295.800 kb on - strandat 295.800 kb on - strandat 295.800 kb on - strandat 295.800 kb on - strandat 295.800 kb on - strandat 295.877 kb on + strand, within Psyr_0278at 296.120 kb on + strand, within Psyr_0278at 296.121 kb on - strand, within Psyr_0278at 296.278 kb on + strand, within Psyr_0278at 296.278 kb on + strand, within Psyr_0278at 296.278 kb on + strand, within Psyr_0278at 296.279 kb on - strand, within Psyr_0278at 296.279 kb on - strand, within Psyr_0278at 296.356 kb on + strand, within Psyr_0278at 296.356 kb on + strand, within Psyr_0278at 296.356 kb on + strand, within Psyr_0278at 296.357 kb on - strand, within Psyr_0278at 296.357 kb on - strand, within Psyr_0278at 296.466 kb on + strand, within Psyr_0278at 296.506 kb on + strandat 296.507 kb on - strandat 296.507 kb on - strandat 296.507 kb on - strandat 296.508 kb on + strandat 296.509 kb on - strandat 296.509 kb on - strandat 296.550 kb on + strandat 296.567 kb on + strandat 296.568 kb on - strandat 296.568 kb on - strandat 296.568 kb on - strandat 296.629 kb on + strandat 296.630 kb on - strandat 296.871 kb on - strand, within Psyr_0279at 297.102 kb on + strand, within Psyr_0279at 297.210 kb on + strand, within Psyr_0279at 297.210 kb on + strand, within Psyr_0279at 297.210 kb on + strand, within Psyr_0279at 297.211 kb on - strand, within Psyr_0279at 297.404 kb on + strandat 297.404 kb on + strandat 297.404 kb on + strandat 297.405 kb on - strandat 297.405 kb on - strandat 297.405 kb on - strandat 297.405 kb on - strandat 297.405 kb on - strandat 297.406 kb on + strandat 297.406 kb on + strandat 297.406 kb on + strandat 297.407 kb on - strandat 297.407 kb on - strandat 297.464 kb on + strandat 297.464 kb on + strandat 297.465 kb on - strandat 297.465 kb on - strandat 297.465 kb on - strandat 297.603 kb on + strandat 297.661 kb on + strandat 297.661 kb on + strandat 297.661 kb on + strandat 297.662 kb on - strandat 297.662 kb on - strandat 297.662 kb on - strandat 297.837 kb on + strand, within Psyr_0280at 298.008 kb on + strand, within Psyr_0280at 298.008 kb on + strand, within Psyr_0280at 298.080 kb on - strand, within Psyr_0280at 298.114 kb on + strand, within Psyr_0280at 298.114 kb on + strand, within Psyr_0280at 298.114 kb on + strand, within Psyr_0280at 298.114 kb on + strand, within Psyr_0280at 298.114 kb on + strand, within Psyr_0280at 298.114 kb on + strand, within Psyr_0280at 298.115 kb on - strand, within Psyr_0280at 298.115 kb on - strand, within Psyr_0280at 298.115 kb on - strand, within Psyr_0280at 298.148 kb on - strand, within Psyr_0280at 298.148 kb on - strand, within Psyr_0280at 298.273 kb on + strand, within Psyr_0280at 298.293 kb on + strand, within Psyr_0280at 298.294 kb on - strand, within Psyr_0280

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Phloretin 125 ug/ml
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295,681 + Psyr_0277 0.86 +1.0
295,681 + Psyr_0277 0.86 +0.8
295,682 - Psyr_0277 0.86 +0.6
295,682 - Psyr_0277 0.86 +0.5
295,682 - Psyr_0277 0.86 -0.3
295,682 - Psyr_0277 0.86 +0.9
295,776 + -0.3
295,776 + -0.8
295,777 - -1.7
295,777 - -1.3
295,777 - -2.2
295,777 - -1.0
295,777 - +0.5
295,799 + -0.4
295,799 + -0.8
295,799 + -0.8
295,799 + -0.6
295,799 + -0.4
295,799 + -1.1
295,799 + -0.6
295,799 + +0.6
295,800 - +0.4
295,800 - +0.8
295,800 - -1.6
295,800 - -2.0
295,800 - +0.1
295,800 - +0.0
295,877 + Psyr_0278 0.12 -0.9
296,120 + Psyr_0278 0.43 +0.0
296,121 - Psyr_0278 0.43 +0.3
296,278 + Psyr_0278 0.63 -1.2
296,278 + Psyr_0278 0.63 -0.5
296,278 + Psyr_0278 0.63 +0.0
296,279 - Psyr_0278 0.63 -0.1
296,279 - Psyr_0278 0.63 -0.0
296,356 + Psyr_0278 0.73 -1.3
296,356 + Psyr_0278 0.73 -0.2
296,356 + Psyr_0278 0.73 +1.8
296,357 - Psyr_0278 0.73 -2.4
296,357 - Psyr_0278 0.73 -0.3
296,466 + Psyr_0278 0.87 +1.6
296,506 + -0.6
296,507 - -0.6
296,507 - -1.8
296,507 - +1.2
296,508 + +0.4
296,509 - +0.3
296,509 - +0.0
296,550 + -0.9
296,567 + +0.3
296,568 - +0.2
296,568 - +0.5
296,568 - +0.2
296,629 + -0.7
296,630 - -0.5
296,871 - Psyr_0279 0.37 +1.3
297,102 + Psyr_0279 0.69 +0.6
297,210 + Psyr_0279 0.84 +0.7
297,210 + Psyr_0279 0.84 +0.7
297,210 + Psyr_0279 0.84 -0.4
297,211 - Psyr_0279 0.84 -0.7
297,404 + +0.6
297,404 + -0.2
297,404 + -1.0
297,405 - -0.6
297,405 - -1.0
297,405 - +0.0
297,405 - -1.4
297,405 - +1.0
297,406 + +0.7
297,406 + +0.4
297,406 + +0.0
297,407 - +0.0
297,407 - -0.1
297,464 + +1.4
297,464 + -1.5
297,465 - -0.6
297,465 - -2.3
297,465 - +0.5
297,603 + -2.4
297,661 + -0.5
297,661 + -0.5
297,661 + -0.6
297,662 - -0.4
297,662 - -0.6
297,662 - +0.4
297,837 + Psyr_0280 0.17 -0.4
298,008 + Psyr_0280 0.25 -0.4
298,008 + Psyr_0280 0.25 +0.6
298,080 - Psyr_0280 0.28 +0.1
298,114 + Psyr_0280 0.30 -0.8
298,114 + Psyr_0280 0.30 +0.2
298,114 + Psyr_0280 0.30 +1.3
298,114 + Psyr_0280 0.30 -0.1
298,114 + Psyr_0280 0.30 -0.8
298,114 + Psyr_0280 0.30 +0.6
298,115 - Psyr_0280 0.30 +0.7
298,115 - Psyr_0280 0.30 -1.0
298,115 - Psyr_0280 0.30 +1.0
298,148 - Psyr_0280 0.31 -0.9
298,148 - Psyr_0280 0.31 -1.2
298,273 + Psyr_0280 0.37 +0.3
298,293 + Psyr_0280 0.38 +0.5
298,294 - Psyr_0280 0.38 +0.0

Or see this region's nucleotide sequence