Experiment: Paraquat dichloride 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_799 and PfGW456L13_800 are separated by 482 nucleotides PfGW456L13_800 and PfGW456L13_801 are separated by 11 nucleotides PfGW456L13_801 and PfGW456L13_802 are separated by 141 nucleotides PfGW456L13_802 and PfGW456L13_803 are separated by 189 nucleotides PfGW456L13_803 and PfGW456L13_804 are separated by 119 nucleotides PfGW456L13_804 and PfGW456L13_805 are separated by 18 nucleotides
PfGW456L13_799 - Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2), at 899,206 to 900,792
_799
PfGW456L13_800 - LSU ribosomal protein L28p, at 901,275 to 901,472
_800
PfGW456L13_801 - LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent, at 901,484 to 901,639
_801
PfGW456L13_802 - hypothetical protein, at 901,781 to 901,993
_802
PfGW456L13_803 - FIG00953403: hypothetical protein, at 902,183 to 902,545
_803
PfGW456L13_804 - hypothetical protein, at 902,665 to 902,784
_804
PfGW456L13_805 - gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.99); 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) <small>(from data)</small>, at 902,803 to 904,296
_805
Position (kb) 901
902 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6
7 at 900.804 kb on + strand at 900.804 kb on + strand at 900.804 kb on + strand at 900.804 kb on + strand at 900.804 kb on + strand at 900.805 kb on - strand at 900.805 kb on - strand at 900.805 kb on - strand at 900.805 kb on - strand at 900.805 kb on - strand at 900.805 kb on - strand at 900.806 kb on + strand at 900.806 kb on + strand at 900.806 kb on + strand at 900.806 kb on + strand at 900.807 kb on - strand at 900.807 kb on - strand at 900.849 kb on + strand at 900.849 kb on + strand at 900.850 kb on - strand at 900.855 kb on - strand at 900.855 kb on - strand at 900.878 kb on - strand at 900.894 kb on + strand at 900.895 kb on - strand at 900.895 kb on - strand at 900.903 kb on + strand at 900.903 kb on + strand at 900.903 kb on + strand at 900.903 kb on + strand at 900.904 kb on - strand at 900.904 kb on - strand at 900.904 kb on - strand at 900.904 kb on - strand at 900.904 kb on - strand at 900.905 kb on + strand at 900.905 kb on + strand at 900.905 kb on + strand at 900.905 kb on + strand at 900.905 kb on + strand at 900.906 kb on - strand at 900.906 kb on - strand at 900.906 kb on - strand at 900.906 kb on - strand at 900.906 kb on - strand at 900.906 kb on - strand at 900.906 kb on - strand at 900.906 kb on - strand at 901.756 kb on - strand at 901.756 kb on - strand at 901.848 kb on + strand, within PfGW456L13_802 at 901.848 kb on + strand, within PfGW456L13_802 at 901.848 kb on + strand, within PfGW456L13_802 at 901.848 kb on + strand, within PfGW456L13_802 at 901.848 kb on + strand, within PfGW456L13_802 at 901.849 kb on - strand, within PfGW456L13_802 at 901.849 kb on - strand, within PfGW456L13_802 at 901.849 kb on - strand, within PfGW456L13_802 at 901.849 kb on - strand, within PfGW456L13_802 at 901.849 kb on - strand, within PfGW456L13_802 at 901.849 kb on - strand, within PfGW456L13_802 at 901.886 kb on + strand, within PfGW456L13_802 at 901.887 kb on - strand, within PfGW456L13_802 at 901.935 kb on + strand, within PfGW456L13_802 at 901.935 kb on + strand, within PfGW456L13_802 at 901.935 kb on + strand, within PfGW456L13_802 at 901.936 kb on - strand, within PfGW456L13_802 at 901.936 kb on - strand, within PfGW456L13_802 at 901.936 kb on - strand, within PfGW456L13_802 at 901.936 kb on - strand, within PfGW456L13_802 at 901.950 kb on + strand, within PfGW456L13_802 at 901.950 kb on + strand, within PfGW456L13_802 at 901.950 kb on + strand, within PfGW456L13_802 at 901.950 kb on + strand at 901.950 kb on + strand, within PfGW456L13_802 at 901.950 kb on + strand, within PfGW456L13_802 at 901.950 kb on + strand, within PfGW456L13_802 at 901.951 kb on - strand, within PfGW456L13_802 at 901.951 kb on - strand, within PfGW456L13_802 at 901.951 kb on - strand, within PfGW456L13_802 at 901.951 kb on - strand, within PfGW456L13_802 at 901.951 kb on - strand, within PfGW456L13_802 at 901.951 kb on - strand, within PfGW456L13_802 at 901.951 kb on - strand, within PfGW456L13_802 at 901.964 kb on - strand, within PfGW456L13_802 at 901.964 kb on - strand, within PfGW456L13_802 at 901.995 kb on + strand at 901.996 kb on - strand at 901.996 kb on - strand at 902.064 kb on + strand at 902.064 kb on + strand at 902.086 kb on + strand at 902.087 kb on - strand at 902.087 kb on - strand at 902.087 kb on - strand at 902.087 kb on - strand at 902.098 kb on + strand at 902.098 kb on + strand at 902.098 kb on + strand at 902.098 kb on + strand at 902.098 kb on + strand at 902.098 kb on + strand at 902.099 kb on - strand at 902.099 kb on - strand at 902.099 kb on - strand at 902.099 kb on - strand at 902.099 kb on - strand at 902.165 kb on + strand at 902.166 kb on - strand at 902.208 kb on + strand at 902.208 kb on + strand at 902.208 kb on + strand at 902.208 kb on + strand at 902.208 kb on + strand at 902.208 kb on + strand at 902.208 kb on - strand at 902.209 kb on - strand at 902.209 kb on - strand at 902.209 kb on - strand at 902.209 kb on - strand at 902.209 kb on - strand at 902.209 kb on - strand at 902.209 kb on - strand at 902.209 kb on - strand at 902.209 kb on - strand at 902.209 kb on - strand at 902.209 kb on - strand at 902.209 kb on - strand at 902.315 kb on + strand, within PfGW456L13_803 at 902.315 kb on + strand, within PfGW456L13_803 at 902.315 kb on + strand, within PfGW456L13_803 at 902.315 kb on + strand, within PfGW456L13_803 at 902.315 kb on + strand, within PfGW456L13_803 at 902.315 kb on + strand, within PfGW456L13_803 at 902.316 kb on - strand, within PfGW456L13_803 at 902.316 kb on - strand, within PfGW456L13_803 at 902.316 kb on - strand, within PfGW456L13_803 at 902.316 kb on - strand, within PfGW456L13_803 at 902.316 kb on - strand, within PfGW456L13_803 at 902.316 kb on - strand, within PfGW456L13_803 at 902.316 kb on - strand, within PfGW456L13_803 at 902.316 kb on - strand, within PfGW456L13_803 at 902.316 kb on - strand, within PfGW456L13_803 at 902.346 kb on + strand, within PfGW456L13_803 at 902.367 kb on - strand, within PfGW456L13_803 at 902.367 kb on - strand, within PfGW456L13_803 at 902.430 kb on + strand, within PfGW456L13_803 at 902.430 kb on + strand, within PfGW456L13_803 at 902.430 kb on + strand, within PfGW456L13_803 at 902.430 kb on + strand, within PfGW456L13_803 at 902.430 kb on + strand, within PfGW456L13_803 at 902.431 kb on - strand, within PfGW456L13_803 at 902.431 kb on - strand, within PfGW456L13_803 at 902.431 kb on - strand, within PfGW456L13_803 at 902.431 kb on - strand, within PfGW456L13_803 at 902.439 kb on + strand, within PfGW456L13_803 at 902.439 kb on + strand, within PfGW456L13_803 at 902.439 kb on + strand, within PfGW456L13_803 at 902.439 kb on + strand, within PfGW456L13_803 at 902.439 kb on + strand, within PfGW456L13_803 at 902.439 kb on + strand, within PfGW456L13_803 at 902.439 kb on + strand, within PfGW456L13_803 at 902.439 kb on + strand, within PfGW456L13_803 at 902.440 kb on - strand, within PfGW456L13_803 at 902.440 kb on - strand, within PfGW456L13_803 at 902.440 kb on - strand, within PfGW456L13_803 at 902.440 kb on - strand, within PfGW456L13_803 at 902.440 kb on - strand, within PfGW456L13_803 at 902.440 kb on - strand, within PfGW456L13_803 at 902.440 kb on - strand, within PfGW456L13_803 at 902.440 kb on - strand, within PfGW456L13_803 at 902.468 kb on + strand, within PfGW456L13_803 at 902.468 kb on + strand, within PfGW456L13_803 at 902.468 kb on + strand, within PfGW456L13_803 at 902.468 kb on + strand, within PfGW456L13_803 at 902.468 kb on + strand, within PfGW456L13_803 at 902.468 kb on + strand, within PfGW456L13_803 at 902.468 kb on + strand, within PfGW456L13_803 at 902.468 kb on + strand, within PfGW456L13_803 at 902.469 kb on - strand, within PfGW456L13_803 at 902.469 kb on - strand, within PfGW456L13_803 at 902.551 kb on + strand at 902.551 kb on + strand at 902.551 kb on + strand at 902.552 kb on - strand at 902.552 kb on - strand at 902.552 kb on - strand at 902.552 kb on - strand at 902.552 kb on - strand at 902.552 kb on - strand at 902.552 kb on - strand at 902.552 kb on - strand at 902.552 kb on - strand at 902.552 kb on - strand at 902.552 kb on - strand at 902.552 kb on - strand at 902.619 kb on + strand at 902.619 kb on + strand at 902.619 kb on + strand at 902.620 kb on - strand at 902.620 kb on - strand at 902.620 kb on - strand at 902.620 kb on - strand at 902.626 kb on - strand at 902.628 kb on + strand at 902.628 kb on + strand at 902.629 kb on - strand at 902.629 kb on - strand at 902.661 kb on + strand at 902.661 kb on + strand at 902.661 kb on + strand at 902.661 kb on + strand at 902.661 kb on + strand at 902.662 kb on - strand at 902.662 kb on - strand at 902.670 kb on + strand at 902.671 kb on - strand at 902.671 kb on - strand at 902.671 kb on - strand at 902.672 kb on + strand at 902.698 kb on + strand, within PfGW456L13_804 at 902.698 kb on + strand, within PfGW456L13_804 at 902.779 kb on + strand at 902.779 kb on + strand at 902.780 kb on - strand at 902.785 kb on + strand at 902.785 kb on + strand at 902.785 kb on + strand at 902.785 kb on + strand at 902.786 kb on - strand at 902.786 kb on - strand at 902.869 kb on + strand at 902.869 kb on + strand at 902.869 kb on + strand at 902.869 kb on + strand at 902.870 kb on - strand at 902.870 kb on - strand at 902.870 kb on - strand at 902.870 kb on - strand at 902.871 kb on + strand at 902.871 kb on + strand at 902.871 kb on + strand at 902.871 kb on + strand at 902.872 kb on - strand at 902.884 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.032 mg/ml remove 900,804 + -0.7 900,804 + -0.7 900,804 + -1.0 900,804 + -0.5 900,804 + -0.9 900,805 - +1.6 900,805 - +0.1 900,805 - -0.8 900,805 - +0.4 900,805 - -0.0 900,805 - -0.1 900,806 + +0.1 900,806 + -0.4 900,806 + -1.0 900,806 + -1.0 900,807 - -0.2 900,807 - +0.4 900,849 + -1.9 900,849 + -1.7 900,850 - +0.7 900,855 - -2.0 900,855 - +0.7 900,878 - +0.4 900,894 + -1.6 900,895 - -0.7 900,895 - +0.8 900,903 + +0.5 900,903 + -0.0 900,903 + -0.1 900,903 + -0.3 900,904 - +1.3 900,904 - +0.0 900,904 - +1.3 900,904 - -0.5 900,904 - +0.4 900,905 + -1.6 900,905 + +0.2 900,905 + -0.1 900,905 + -1.4 900,905 + -0.8 900,906 - +0.6 900,906 - +0.1 900,906 - -0.2 900,906 - +0.4 900,906 - -0.9 900,906 - +0.5 900,906 - -1.4 900,906 - -0.8 901,756 - +0.9 901,756 - +0.6 901,848 + PfGW456L13_802 0.31 +2.0 901,848 + PfGW456L13_802 0.31 +1.2 901,848 + PfGW456L13_802 0.31 +1.5 901,848 + PfGW456L13_802 0.31 +1.2 901,848 + PfGW456L13_802 0.31 +2.1 901,849 - PfGW456L13_802 0.32 +0.9 901,849 - PfGW456L13_802 0.32 +1.5 901,849 - PfGW456L13_802 0.32 +0.9 901,849 - PfGW456L13_802 0.32 -0.4 901,849 - PfGW456L13_802 0.32 +1.8 901,849 - PfGW456L13_802 0.32 +1.7 901,886 + PfGW456L13_802 0.49 +1.3 901,887 - PfGW456L13_802 0.50 +0.5 901,935 + PfGW456L13_802 0.72 +1.7 901,935 + PfGW456L13_802 0.72 +2.2 901,935 + PfGW456L13_802 0.72 +3.2 901,936 - PfGW456L13_802 0.73 +0.9 901,936 - PfGW456L13_802 0.73 +0.7 901,936 - PfGW456L13_802 0.73 +1.4 901,936 - PfGW456L13_802 0.73 +0.9 901,950 + PfGW456L13_802 0.79 +1.2 901,950 + PfGW456L13_802 0.79 +2.5 901,950 + PfGW456L13_802 0.79 +1.4 901,950 + +5.2 901,950 + PfGW456L13_802 0.79 +2.2 901,950 + PfGW456L13_802 0.79 +1.4 901,950 + PfGW456L13_802 0.79 +1.7 901,951 - PfGW456L13_802 0.80 -1.0 901,951 - PfGW456L13_802 0.80 +0.6 901,951 - PfGW456L13_802 0.80 +0.9 901,951 - PfGW456L13_802 0.80 +1.5 901,951 - PfGW456L13_802 0.80 +1.8 901,951 - PfGW456L13_802 0.80 +1.4 901,951 - PfGW456L13_802 0.80 +1.5 901,964 - PfGW456L13_802 0.86 +1.3 901,964 - PfGW456L13_802 0.86 +1.2 901,995 + +1.9 901,996 - +1.1 901,996 - +1.2 902,064 + +4.5 902,064 + +3.1 902,086 + +2.4 902,087 - +1.2 902,087 - +1.0 902,087 - +0.5 902,087 - +0.7 902,098 + +3.7 902,098 + +2.4 902,098 + +2.4 902,098 + +3.2 902,098 + +3.0 902,098 + +3.1 902,099 - +0.8 902,099 - +1.4 902,099 - +1.3 902,099 - +1.0 902,099 - +1.3 902,165 + +2.3 902,166 - +1.2 902,208 + +3.4 902,208 + +4.9 902,208 + +3.8 902,208 + +3.6 902,208 + +3.9 902,208 + +2.9 902,208 - +1.5 902,209 - +1.8 902,209 - +1.2 902,209 - +0.8 902,209 - +0.9 902,209 - -0.1 902,209 - +0.8 902,209 - +2.3 902,209 - +2.1 902,209 - +1.6 902,209 - +0.3 902,209 - +0.7 902,209 - +2.0 902,315 + PfGW456L13_803 0.36 +5.5 902,315 + PfGW456L13_803 0.36 +4.6 902,315 + PfGW456L13_803 0.36 +5.5 902,315 + PfGW456L13_803 0.36 +4.6 902,315 + PfGW456L13_803 0.36 +4.4 902,315 + PfGW456L13_803 0.36 +5.4 902,316 - PfGW456L13_803 0.37 -0.4 902,316 - PfGW456L13_803 0.37 +1.3 902,316 - PfGW456L13_803 0.37 +0.9 902,316 - PfGW456L13_803 0.37 +2.1 902,316 - PfGW456L13_803 0.37 +0.2 902,316 - PfGW456L13_803 0.37 +0.9 902,316 - PfGW456L13_803 0.37 +2.1 902,316 - PfGW456L13_803 0.37 +0.8 902,316 - PfGW456L13_803 0.37 +1.0 902,346 + PfGW456L13_803 0.45 +4.3 902,367 - PfGW456L13_803 0.51 +1.4 902,367 - PfGW456L13_803 0.51 +1.7 902,430 + PfGW456L13_803 0.68 +5.6 902,430 + PfGW456L13_803 0.68 +6.1 902,430 + PfGW456L13_803 0.68 +5.4 902,430 + PfGW456L13_803 0.68 +5.7 902,430 + PfGW456L13_803 0.68 +6.1 902,431 - PfGW456L13_803 0.68 +1.3 902,431 - PfGW456L13_803 0.68 +1.3 902,431 - PfGW456L13_803 0.68 +1.9 902,431 - PfGW456L13_803 0.68 +1.6 902,439 + PfGW456L13_803 0.71 +6.0 902,439 + PfGW456L13_803 0.71 +5.4 902,439 + PfGW456L13_803 0.71 +3.7 902,439 + PfGW456L13_803 0.71 +6.1 902,439 + PfGW456L13_803 0.71 +5.9 902,439 + PfGW456L13_803 0.71 +5.0 902,439 + PfGW456L13_803 0.71 +5.9 902,439 + PfGW456L13_803 0.71 +5.7 902,440 - PfGW456L13_803 0.71 +1.8 902,440 - PfGW456L13_803 0.71 +0.8 902,440 - PfGW456L13_803 0.71 +0.9 902,440 - PfGW456L13_803 0.71 +1.3 902,440 - PfGW456L13_803 0.71 +1.7 902,440 - PfGW456L13_803 0.71 +2.1 902,440 - PfGW456L13_803 0.71 +1.9 902,440 - PfGW456L13_803 0.71 +1.6 902,468 + PfGW456L13_803 0.79 +6.4 902,468 + PfGW456L13_803 0.79 +6.4 902,468 + PfGW456L13_803 0.79 +5.6 902,468 + PfGW456L13_803 0.79 +6.1 902,468 + PfGW456L13_803 0.79 +5.2 902,468 + PfGW456L13_803 0.79 +6.1 902,468 + PfGW456L13_803 0.79 +6.3 902,468 + PfGW456L13_803 0.79 +6.3 902,469 - PfGW456L13_803 0.79 +1.2 902,469 - PfGW456L13_803 0.79 +0.8 902,551 + +6.6 902,551 + +6.1 902,551 + +7.2 902,552 - +0.0 902,552 - +1.3 902,552 - +0.2 902,552 - +0.9 902,552 - +1.0 902,552 - +0.9 902,552 - +0.8 902,552 - +0.7 902,552 - +2.8 902,552 - +0.8 902,552 - -0.5 902,552 - +1.2 902,619 + +6.4 902,619 + +7.0 902,619 + +6.6 902,620 - +0.3 902,620 - +0.7 902,620 - -1.4 902,620 - +0.8 902,626 - +1.9 902,628 + +6.6 902,628 + +6.5 902,629 - +2.1 902,629 - +2.1 902,661 + +6.2 902,661 + +6.6 902,661 + +7.3 902,661 + +6.6 902,661 + +6.4 902,662 - +2.8 902,662 - +1.2 902,670 + +5.7 902,671 - -0.4 902,671 - -0.5 902,671 - +0.6 902,672 + +5.2 902,698 + PfGW456L13_804 0.28 +4.6 902,698 + PfGW456L13_804 0.28 +4.3 902,779 + +5.8 902,779 + +6.5 902,780 - -4.2 902,785 + +4.1 902,785 + +4.7 902,785 + +5.4 902,785 + +4.5 902,786 - -3.9 902,786 - -3.4 902,869 + -0.6 902,869 + +0.0 902,869 + -0.3 902,869 + +0.1 902,870 - -3.4 902,870 - -4.2 902,870 - -2.1 902,870 - -3.4 902,871 + +0.1 902,871 + -1.1 902,871 + -3.6 902,871 + +0.8 902,872 - -4.0 902,884 + +0.6
Or see this region's nucleotide sequence