Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_447

Experiment: Paraquat dichloride 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_446 and PfGW456L13_447 are separated by 483 nucleotidesPfGW456L13_447 and PfGW456L13_448 are separated by 55 nucleotidesPfGW456L13_448 and PfGW456L13_449 are separated by 48 nucleotides PfGW456L13_446 - Cystine ABC transporter, ATP-binding protein, at 510,319 to 511,074 _446 PfGW456L13_447 - FIG00957011: hypothetical protein, at 511,558 to 512,322 _447 PfGW456L13_448 - hypothetical protein, at 512,378 to 512,506 _448 PfGW456L13_449 - Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme, at 512,555 to 513,787 _449 Position (kb) 511 512 513Strain fitness (log2 ratio) -2 -1 0 1 2at 510.572 kb on + strand, within PfGW456L13_446at 510.572 kb on + strand, within PfGW456L13_446at 510.572 kb on + strand, within PfGW456L13_446at 510.573 kb on - strand, within PfGW456L13_446at 510.573 kb on - strand, within PfGW456L13_446at 510.573 kb on - strand, within PfGW456L13_446at 510.573 kb on - strand, within PfGW456L13_446at 510.573 kb on - strand, within PfGW456L13_446at 510.573 kb on - strand, within PfGW456L13_446at 510.573 kb on - strand, within PfGW456L13_446at 510.860 kb on + strand, within PfGW456L13_446at 510.861 kb on - strand, within PfGW456L13_446at 510.861 kb on - strand, within PfGW456L13_446at 510.861 kb on - strand, within PfGW456L13_446at 510.861 kb on - strand, within PfGW456L13_446at 511.162 kb on + strandat 511.170 kb on - strandat 511.172 kb on - strandat 511.199 kb on + strandat 511.199 kb on + strandat 511.199 kb on + strandat 511.200 kb on - strandat 511.200 kb on - strandat 511.200 kb on - strandat 511.200 kb on - strandat 511.200 kb on - strandat 511.200 kb on - strandat 511.202 kb on - strandat 511.202 kb on - strandat 511.202 kb on - strandat 511.202 kb on - strandat 511.230 kb on - strandat 511.386 kb on - strandat 511.670 kb on - strand, within PfGW456L13_447at 511.720 kb on + strand, within PfGW456L13_447at 511.720 kb on + strand, within PfGW456L13_447at 511.721 kb on - strand, within PfGW456L13_447at 511.721 kb on - strand, within PfGW456L13_447at 512.188 kb on + strand, within PfGW456L13_447at 512.188 kb on + strand, within PfGW456L13_447at 512.188 kb on + strand, within PfGW456L13_447at 512.188 kb on + strand, within PfGW456L13_447at 512.189 kb on - strand, within PfGW456L13_447at 512.189 kb on - strand, within PfGW456L13_447at 512.189 kb on - strand, within PfGW456L13_447at 512.189 kb on - strand, within PfGW456L13_447at 512.266 kb on + strandat 512.364 kb on + strandat 512.411 kb on - strand, within PfGW456L13_448at 512.470 kb on + strand, within PfGW456L13_448at 512.470 kb on + strand, within PfGW456L13_448at 512.470 kb on + strand, within PfGW456L13_448at 512.470 kb on + strand, within PfGW456L13_448at 512.470 kb on + strand, within PfGW456L13_448at 512.471 kb on - strand, within PfGW456L13_448at 512.471 kb on - strand, within PfGW456L13_448at 512.471 kb on - strand, within PfGW456L13_448at 512.482 kb on + strand, within PfGW456L13_448at 512.482 kb on + strand, within PfGW456L13_448at 512.482 kb on + strand, within PfGW456L13_448at 512.482 kb on + strand, within PfGW456L13_448at 512.482 kb on + strand, within PfGW456L13_448at 512.482 kb on + strand, within PfGW456L13_448at 512.482 kb on + strand, within PfGW456L13_448at 512.482 kb on + strand, within PfGW456L13_448at 512.482 kb on + strand, within PfGW456L13_448at 512.483 kb on - strand, within PfGW456L13_448at 512.483 kb on - strand, within PfGW456L13_448at 512.486 kb on + strand, within PfGW456L13_448at 512.487 kb on - strand, within PfGW456L13_448at 512.487 kb on - strand, within PfGW456L13_448at 512.487 kb on - strand, within PfGW456L13_448at 512.487 kb on - strand, within PfGW456L13_448at 512.487 kb on - strand, within PfGW456L13_448at 512.487 kb on - strand, within PfGW456L13_448at 512.487 kb on - strand, within PfGW456L13_448at 512.487 kb on - strand, within PfGW456L13_448at 512.764 kb on + strand, within PfGW456L13_449at 512.764 kb on + strand, within PfGW456L13_449at 512.764 kb on + strand, within PfGW456L13_449at 512.765 kb on - strand, within PfGW456L13_449at 512.783 kb on + strand, within PfGW456L13_449at 512.891 kb on - strand, within PfGW456L13_449at 513.056 kb on + strand, within PfGW456L13_449at 513.057 kb on - strand, within PfGW456L13_449at 513.057 kb on - strand, within PfGW456L13_449at 513.057 kb on - strand, within PfGW456L13_449

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.032 mg/ml
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510,572 + PfGW456L13_446 0.33 +0.3
510,572 + PfGW456L13_446 0.33 -0.9
510,572 + PfGW456L13_446 0.33 -0.7
510,573 - PfGW456L13_446 0.34 +0.6
510,573 - PfGW456L13_446 0.34 +0.5
510,573 - PfGW456L13_446 0.34 +0.0
510,573 - PfGW456L13_446 0.34 +0.2
510,573 - PfGW456L13_446 0.34 +0.1
510,573 - PfGW456L13_446 0.34 -0.0
510,573 - PfGW456L13_446 0.34 +0.2
510,860 + PfGW456L13_446 0.72 -0.4
510,861 - PfGW456L13_446 0.72 -0.2
510,861 - PfGW456L13_446 0.72 +0.3
510,861 - PfGW456L13_446 0.72 +1.3
510,861 - PfGW456L13_446 0.72 +0.9
511,162 + +0.6
511,170 - -0.0
511,172 - -0.2
511,199 + -1.1
511,199 + -2.1
511,199 + -0.4
511,200 - -0.0
511,200 - +0.2
511,200 - -1.6
511,200 - +1.3
511,200 - +1.0
511,200 - +0.4
511,202 - -1.0
511,202 - -1.1
511,202 - +1.4
511,202 - +0.0
511,230 - +1.0
511,386 - -0.0
511,670 - PfGW456L13_447 0.15 -0.3
511,720 + PfGW456L13_447 0.21 -1.4
511,720 + PfGW456L13_447 0.21 +0.0
511,721 - PfGW456L13_447 0.21 +0.8
511,721 - PfGW456L13_447 0.21 -0.3
512,188 + PfGW456L13_447 0.82 +0.2
512,188 + PfGW456L13_447 0.82 +0.1
512,188 + PfGW456L13_447 0.82 +0.4
512,188 + PfGW456L13_447 0.82 -0.4
512,189 - PfGW456L13_447 0.82 -0.8
512,189 - PfGW456L13_447 0.82 +0.5
512,189 - PfGW456L13_447 0.82 -0.4
512,189 - PfGW456L13_447 0.82 -0.1
512,266 + +1.0
512,364 + -0.4
512,411 - PfGW456L13_448 0.26 +0.0
512,470 + PfGW456L13_448 0.71 -0.2
512,470 + PfGW456L13_448 0.71 -0.3
512,470 + PfGW456L13_448 0.71 -0.3
512,470 + PfGW456L13_448 0.71 -0.3
512,470 + PfGW456L13_448 0.71 -0.5
512,471 - PfGW456L13_448 0.72 +0.6
512,471 - PfGW456L13_448 0.72 +0.2
512,471 - PfGW456L13_448 0.72 -0.3
512,482 + PfGW456L13_448 0.81 -0.4
512,482 + PfGW456L13_448 0.81 +0.4
512,482 + PfGW456L13_448 0.81 +1.9
512,482 + PfGW456L13_448 0.81 -0.2
512,482 + PfGW456L13_448 0.81 +0.8
512,482 + PfGW456L13_448 0.81 +0.1
512,482 + PfGW456L13_448 0.81 +0.2
512,482 + PfGW456L13_448 0.81 +0.6
512,482 + PfGW456L13_448 0.81 +0.0
512,483 - PfGW456L13_448 0.81 +0.7
512,483 - PfGW456L13_448 0.81 +0.6
512,486 + PfGW456L13_448 0.84 +1.3
512,487 - PfGW456L13_448 0.84 -0.1
512,487 - PfGW456L13_448 0.84 +0.0
512,487 - PfGW456L13_448 0.84 -0.1
512,487 - PfGW456L13_448 0.84 -0.1
512,487 - PfGW456L13_448 0.84 +0.2
512,487 - PfGW456L13_448 0.84 -0.1
512,487 - PfGW456L13_448 0.84 -0.4
512,487 - PfGW456L13_448 0.84 +0.2
512,764 + PfGW456L13_449 0.17 -0.1
512,764 + PfGW456L13_449 0.17 +0.1
512,764 + PfGW456L13_449 0.17 -0.3
512,765 - PfGW456L13_449 0.17 -0.7
512,783 + PfGW456L13_449 0.18 -0.2
512,891 - PfGW456L13_449 0.27 +1.1
513,056 + PfGW456L13_449 0.41 -0.3
513,057 - PfGW456L13_449 0.41 -0.3
513,057 - PfGW456L13_449 0.41 +0.1
513,057 - PfGW456L13_449 0.41 +0.3

Or see this region's nucleotide sequence