Experiment: Paraquat dichloride 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_355 and PfGW456L13_356 are separated by 1 nucleotides PfGW456L13_356 and PfGW456L13_357 are separated by 148 nucleotides PfGW456L13_357 and PfGW456L13_358 are separated by 78 nucleotides PfGW456L13_358 and PfGW456L13_359 are separated by 9 nucleotides
PfGW456L13_355 - Carboxyl-terminal protease (EC 3.4.21.102), at 415,541 to 416,860
_355
PfGW456L13_356 - Putative periplasmic protein YibQ, distant homology with nucleoside diphosphatase and polysaccharide deacetylase, at 416,862 to 417,638
_356
PfGW456L13_357 - ABC-type amino acid transport, signal transduction systems, periplasmic component/domain, at 417,787 to 418,542
_357
PfGW456L13_358 - Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-), at 418,621 to 419,391
_358
PfGW456L13_359 - 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) <small>(from data)</small>, at 419,401 to 420,138
_359
Position (kb) 417
418
419 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 416.801 kb on + strand at 416.802 kb on - strand at 416.949 kb on + strand, within PfGW456L13_356 at 416.949 kb on + strand, within PfGW456L13_356 at 416.949 kb on + strand, within PfGW456L13_356 at 416.950 kb on - strand, within PfGW456L13_356 at 416.950 kb on - strand, within PfGW456L13_356 at 416.950 kb on - strand, within PfGW456L13_356 at 417.210 kb on + strand, within PfGW456L13_356 at 417.210 kb on + strand, within PfGW456L13_356 at 417.211 kb on - strand, within PfGW456L13_356 at 417.391 kb on + strand, within PfGW456L13_356 at 417.391 kb on + strand, within PfGW456L13_356 at 417.391 kb on + strand, within PfGW456L13_356 at 417.391 kb on + strand, within PfGW456L13_356 at 417.391 kb on + strand, within PfGW456L13_356 at 417.391 kb on + strand, within PfGW456L13_356 at 417.392 kb on - strand, within PfGW456L13_356 at 417.392 kb on - strand, within PfGW456L13_356 at 417.392 kb on - strand, within PfGW456L13_356 at 417.392 kb on - strand, within PfGW456L13_356 at 417.392 kb on - strand, within PfGW456L13_356 at 417.630 kb on + strand at 417.658 kb on + strand at 417.658 kb on + strand at 417.658 kb on + strand at 417.659 kb on - strand at 417.659 kb on - strand at 417.708 kb on + strand at 417.778 kb on + strand at 417.788 kb on + strand at 417.788 kb on + strand at 417.788 kb on + strand at 417.788 kb on + strand at 417.789 kb on - strand at 417.789 kb on - strand at 417.789 kb on - strand at 417.794 kb on + strand at 417.794 kb on + strand at 417.795 kb on - strand at 417.795 kb on - strand at 417.795 kb on - strand at 417.795 kb on - strand at 417.805 kb on + strand at 417.805 kb on + strand at 417.806 kb on - strand at 417.806 kb on - strand at 417.806 kb on - strand at 417.806 kb on - strand at 417.899 kb on + strand, within PfGW456L13_357 at 417.899 kb on + strand, within PfGW456L13_357 at 417.899 kb on + strand, within PfGW456L13_357 at 417.900 kb on - strand, within PfGW456L13_357 at 417.900 kb on - strand, within PfGW456L13_357 at 417.900 kb on - strand, within PfGW456L13_357 at 417.900 kb on - strand, within PfGW456L13_357 at 417.900 kb on - strand, within PfGW456L13_357 at 417.925 kb on + strand, within PfGW456L13_357 at 417.926 kb on - strand, within PfGW456L13_357 at 417.926 kb on - strand, within PfGW456L13_357 at 417.965 kb on + strand at 417.966 kb on - strand, within PfGW456L13_357 at 418.045 kb on + strand, within PfGW456L13_357 at 418.045 kb on + strand, within PfGW456L13_357 at 418.045 kb on + strand, within PfGW456L13_357 at 418.045 kb on + strand, within PfGW456L13_357 at 418.046 kb on - strand, within PfGW456L13_357 at 418.103 kb on + strand, within PfGW456L13_357 at 418.103 kb on + strand, within PfGW456L13_357 at 418.104 kb on - strand, within PfGW456L13_357 at 418.104 kb on - strand, within PfGW456L13_357 at 418.118 kb on + strand, within PfGW456L13_357 at 418.118 kb on + strand, within PfGW456L13_357 at 418.118 kb on + strand, within PfGW456L13_357 at 418.118 kb on + strand, within PfGW456L13_357 at 418.119 kb on - strand, within PfGW456L13_357 at 418.119 kb on - strand, within PfGW456L13_357 at 418.119 kb on - strand, within PfGW456L13_357 at 418.253 kb on - strand, within PfGW456L13_357 at 418.253 kb on - strand, within PfGW456L13_357 at 418.253 kb on - strand, within PfGW456L13_357 at 418.286 kb on + strand, within PfGW456L13_357 at 418.287 kb on - strand, within PfGW456L13_357 at 418.287 kb on - strand, within PfGW456L13_357 at 418.322 kb on + strand, within PfGW456L13_357 at 418.322 kb on + strand, within PfGW456L13_357 at 418.322 kb on + strand, within PfGW456L13_357 at 418.323 kb on - strand, within PfGW456L13_357 at 418.323 kb on - strand, within PfGW456L13_357 at 418.323 kb on - strand, within PfGW456L13_357 at 418.323 kb on - strand, within PfGW456L13_357 at 418.323 kb on - strand, within PfGW456L13_357 at 418.326 kb on + strand, within PfGW456L13_357 at 418.326 kb on + strand, within PfGW456L13_357 at 418.326 kb on + strand, within PfGW456L13_357 at 418.326 kb on + strand, within PfGW456L13_357 at 418.326 kb on + strand, within PfGW456L13_357 at 418.326 kb on + strand, within PfGW456L13_357 at 418.327 kb on - strand, within PfGW456L13_357 at 418.327 kb on - strand, within PfGW456L13_357 at 418.327 kb on - strand, within PfGW456L13_357 at 418.327 kb on - strand, within PfGW456L13_357 at 418.327 kb on - strand, within PfGW456L13_357 at 418.327 kb on - strand, within PfGW456L13_357 at 418.327 kb on - strand, within PfGW456L13_357 at 418.327 kb on - strand, within PfGW456L13_357 at 418.345 kb on + strand, within PfGW456L13_357 at 418.345 kb on + strand, within PfGW456L13_357 at 418.345 kb on + strand, within PfGW456L13_357 at 418.345 kb on + strand, within PfGW456L13_357 at 418.346 kb on - strand, within PfGW456L13_357 at 418.424 kb on + strand, within PfGW456L13_357 at 418.425 kb on - strand, within PfGW456L13_357 at 418.425 kb on - strand, within PfGW456L13_357 at 418.536 kb on + strand at 418.536 kb on + strand at 418.536 kb on + strand at 418.537 kb on - strand at 418.537 kb on - strand at 418.537 kb on - strand at 418.622 kb on + strand at 418.623 kb on - strand at 418.650 kb on + strand at 418.651 kb on - strand at 418.651 kb on - strand at 418.652 kb on + strand at 418.652 kb on + strand at 418.652 kb on + strand at 418.652 kb on + strand at 418.652 kb on + strand at 418.652 kb on + strand at 418.652 kb on + strand at 418.652 kb on + strand at 418.652 kb on + strand at 418.652 kb on + strand at 418.652 kb on + strand at 418.652 kb on + strand at 418.652 kb on + strand at 418.653 kb on - strand at 418.653 kb on - strand at 418.653 kb on - strand at 418.653 kb on - strand at 418.653 kb on - strand at 418.653 kb on - strand at 418.653 kb on - strand at 418.653 kb on - strand at 418.653 kb on - strand at 418.653 kb on - strand at 418.653 kb on - strand at 418.653 kb on - strand at 418.653 kb on - strand at 418.653 kb on - strand at 418.653 kb on - strand at 418.653 kb on - strand at 418.653 kb on - strand at 418.676 kb on + strand at 418.677 kb on - strand at 419.248 kb on - strand, within PfGW456L13_358 at 419.248 kb on - strand, within PfGW456L13_358 at 419.273 kb on + strand, within PfGW456L13_358 at 419.411 kb on + strand at 419.411 kb on + strand at 419.411 kb on + strand at 419.412 kb on - strand at 419.412 kb on - strand at 419.412 kb on - strand at 419.412 kb on - strand at 419.412 kb on - strand at 419.412 kb on - strand at 419.459 kb on + strand at 419.460 kb on - strand at 419.460 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.032 mg/ml remove 416,801 + +0.1 416,802 - -0.5 416,949 + PfGW456L13_356 0.11 +0.2 416,949 + PfGW456L13_356 0.11 -0.1 416,949 + PfGW456L13_356 0.11 -0.9 416,950 - PfGW456L13_356 0.11 -0.3 416,950 - PfGW456L13_356 0.11 -1.3 416,950 - PfGW456L13_356 0.11 -0.8 417,210 + PfGW456L13_356 0.45 +0.4 417,210 + PfGW456L13_356 0.45 -0.6 417,211 - PfGW456L13_356 0.45 -0.4 417,391 + PfGW456L13_356 0.68 +0.3 417,391 + PfGW456L13_356 0.68 -0.7 417,391 + PfGW456L13_356 0.68 +0.3 417,391 + PfGW456L13_356 0.68 +0.7 417,391 + PfGW456L13_356 0.68 -1.3 417,391 + PfGW456L13_356 0.68 -0.7 417,392 - PfGW456L13_356 0.68 -0.3 417,392 - PfGW456L13_356 0.68 -1.0 417,392 - PfGW456L13_356 0.68 +0.4 417,392 - PfGW456L13_356 0.68 +0.3 417,392 - PfGW456L13_356 0.68 +0.3 417,630 + +0.0 417,658 + +1.0 417,658 + -0.4 417,658 + -1.1 417,659 - -2.2 417,659 - -1.0 417,708 + +0.0 417,778 + +1.3 417,788 + -2.9 417,788 + +0.9 417,788 + -0.9 417,788 + -0.1 417,789 - -0.7 417,789 - +0.8 417,789 - -1.0 417,794 + +0.3 417,794 + +0.3 417,795 - -0.8 417,795 - +0.3 417,795 - -1.4 417,795 - -0.6 417,805 + +0.7 417,805 + -0.1 417,806 - +0.1 417,806 - -0.3 417,806 - +1.3 417,806 - +0.6 417,899 + PfGW456L13_357 0.15 +0.1 417,899 + PfGW456L13_357 0.15 -0.4 417,899 + PfGW456L13_357 0.15 -0.1 417,900 - PfGW456L13_357 0.15 +0.1 417,900 - PfGW456L13_357 0.15 -1.0 417,900 - PfGW456L13_357 0.15 -0.5 417,900 - PfGW456L13_357 0.15 +0.2 417,900 - PfGW456L13_357 0.15 -0.1 417,925 + PfGW456L13_357 0.18 +0.3 417,926 - PfGW456L13_357 0.18 +0.3 417,926 - PfGW456L13_357 0.18 +0.0 417,965 + -0.9 417,966 - PfGW456L13_357 0.24 +0.8 418,045 + PfGW456L13_357 0.34 +0.1 418,045 + PfGW456L13_357 0.34 -0.4 418,045 + PfGW456L13_357 0.34 +0.4 418,045 + PfGW456L13_357 0.34 -0.6 418,046 - PfGW456L13_357 0.34 +0.0 418,103 + PfGW456L13_357 0.42 -0.2 418,103 + PfGW456L13_357 0.42 -0.4 418,104 - PfGW456L13_357 0.42 -0.4 418,104 - PfGW456L13_357 0.42 +0.3 418,118 + PfGW456L13_357 0.44 -0.4 418,118 + PfGW456L13_357 0.44 -0.1 418,118 + PfGW456L13_357 0.44 -0.4 418,118 + PfGW456L13_357 0.44 -0.1 418,119 - PfGW456L13_357 0.44 +0.4 418,119 - PfGW456L13_357 0.44 +1.0 418,119 - PfGW456L13_357 0.44 +1.2 418,253 - PfGW456L13_357 0.62 -0.8 418,253 - PfGW456L13_357 0.62 -0.0 418,253 - PfGW456L13_357 0.62 +0.8 418,286 + PfGW456L13_357 0.66 -0.7 418,287 - PfGW456L13_357 0.66 -0.4 418,287 - PfGW456L13_357 0.66 +0.4 418,322 + PfGW456L13_357 0.71 -0.2 418,322 + PfGW456L13_357 0.71 -0.1 418,322 + PfGW456L13_357 0.71 +0.1 418,323 - PfGW456L13_357 0.71 +0.0 418,323 - PfGW456L13_357 0.71 -0.1 418,323 - PfGW456L13_357 0.71 +1.8 418,323 - PfGW456L13_357 0.71 +0.8 418,323 - PfGW456L13_357 0.71 -3.2 418,326 + PfGW456L13_357 0.71 +0.2 418,326 + PfGW456L13_357 0.71 -0.1 418,326 + PfGW456L13_357 0.71 -0.9 418,326 + PfGW456L13_357 0.71 -0.3 418,326 + PfGW456L13_357 0.71 +0.2 418,326 + PfGW456L13_357 0.71 +0.7 418,327 - PfGW456L13_357 0.71 -0.6 418,327 - PfGW456L13_357 0.71 +0.8 418,327 - PfGW456L13_357 0.71 +0.2 418,327 - PfGW456L13_357 0.71 +1.4 418,327 - PfGW456L13_357 0.71 -0.4 418,327 - PfGW456L13_357 0.71 +0.7 418,327 - PfGW456L13_357 0.71 +0.3 418,327 - PfGW456L13_357 0.71 -0.0 418,345 + PfGW456L13_357 0.74 +0.6 418,345 + PfGW456L13_357 0.74 -0.0 418,345 + PfGW456L13_357 0.74 +0.3 418,345 + PfGW456L13_357 0.74 -0.0 418,346 - PfGW456L13_357 0.74 +1.3 418,424 + PfGW456L13_357 0.84 -0.7 418,425 - PfGW456L13_357 0.84 -1.6 418,425 - PfGW456L13_357 0.84 -0.2 418,536 + +0.3 418,536 + -0.5 418,536 + +0.0 418,537 - +0.1 418,537 - -1.2 418,537 - +0.4 418,622 + +0.4 418,623 - -0.1 418,650 + +0.0 418,651 - -0.1 418,651 - -0.3 418,652 + -0.2 418,652 + -1.5 418,652 + +0.9 418,652 + +0.8 418,652 + -0.2 418,652 + +1.3 418,652 + +0.1 418,652 + -0.5 418,652 + +0.1 418,652 + +0.7 418,652 + +0.6 418,652 + -0.6 418,652 + -0.1 418,653 - -0.2 418,653 - +0.1 418,653 - -0.1 418,653 - +0.5 418,653 - +0.8 418,653 - -0.5 418,653 - +1.1 418,653 - +0.0 418,653 - +0.3 418,653 - +0.4 418,653 - +0.3 418,653 - -0.5 418,653 - -0.2 418,653 - -0.3 418,653 - -1.2 418,653 - -0.3 418,653 - -0.4 418,676 + -1.7 418,677 - +0.1 419,248 - PfGW456L13_358 0.81 -0.7 419,248 - PfGW456L13_358 0.81 -0.3 419,273 + PfGW456L13_358 0.85 +0.3 419,411 + +0.3 419,411 + -0.3 419,411 + -1.1 419,412 - -0.5 419,412 - -0.1 419,412 - -0.9 419,412 - +0.3 419,412 - +0.4 419,412 - +1.0 419,459 + -0.2 419,460 - -0.1 419,460 - +0.0
Or see this region's nucleotide sequence