Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_277

Experiment: Paraquat dichloride 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_275 and PfGW456L13_276 are separated by 151 nucleotidesPfGW456L13_276 and PfGW456L13_277 are separated by 31 nucleotidesPfGW456L13_277 and PfGW456L13_278 are separated by 13 nucleotidesPfGW456L13_278 and PfGW456L13_279 overlap by 4 nucleotides PfGW456L13_275 - 3-dehydroquinate synthase (EC 4.2.3.4), at 322,813 to 323,913 _275 PfGW456L13_276 - Shikimate kinase I (EC 2.7.1.71), at 324,065 to 324,556 _276 PfGW456L13_277 - Type IV pilus biogenesis protein PilQ, at 324,588 to 326,657 _277 PfGW456L13_278 - Type IV pilus biogenesis protein PilP, at 326,671 to 327,198 _278 PfGW456L13_279 - Type IV pilus biogenesis protein PilO, at 327,195 to 327,818 _279 Position (kb) 324 325 326 327Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 323.804 kb on - strandat 323.944 kb on + strandat 323.964 kb on + strandat 324.067 kb on - strandat 324.095 kb on + strandat 324.095 kb on + strandat 324.096 kb on - strandat 324.096 kb on - strandat 324.096 kb on - strandat 324.107 kb on + strandat 324.107 kb on + strandat 324.288 kb on + strand, within PfGW456L13_276at 324.289 kb on - strand, within PfGW456L13_276at 324.623 kb on + strandat 324.624 kb on - strandat 324.639 kb on + strandat 324.639 kb on + strandat 324.640 kb on - strandat 324.725 kb on + strandat 324.725 kb on + strandat 324.725 kb on + strandat 324.725 kb on + strandat 324.725 kb on + strandat 324.725 kb on + strandat 324.725 kb on + strandat 324.725 kb on + strandat 324.725 kb on + strandat 324.725 kb on + strandat 324.725 kb on + strandat 324.725 kb on + strandat 324.725 kb on + strandat 324.725 kb on + strandat 324.726 kb on - strandat 324.726 kb on - strandat 324.726 kb on - strandat 324.726 kb on - strandat 324.726 kb on - strandat 324.726 kb on - strandat 324.726 kb on - strandat 324.726 kb on - strandat 324.729 kb on + strandat 324.729 kb on + strandat 324.729 kb on + strandat 324.729 kb on + strandat 324.729 kb on + strandat 324.729 kb on + strandat 324.730 kb on - strandat 324.730 kb on - strandat 324.730 kb on - strandat 324.730 kb on - strandat 324.730 kb on - strandat 324.746 kb on + strandat 324.831 kb on + strand, within PfGW456L13_277at 324.832 kb on - strand, within PfGW456L13_277at 324.832 kb on - strand, within PfGW456L13_277at 325.193 kb on + strand, within PfGW456L13_277at 325.193 kb on + strand, within PfGW456L13_277at 325.309 kb on + strand, within PfGW456L13_277at 325.310 kb on - strand, within PfGW456L13_277at 325.310 kb on - strand, within PfGW456L13_277at 325.310 kb on - strand, within PfGW456L13_277at 325.418 kb on - strand, within PfGW456L13_277at 325.418 kb on - strand, within PfGW456L13_277at 325.531 kb on + strand, within PfGW456L13_277at 325.531 kb on + strand, within PfGW456L13_277at 325.531 kb on + strand, within PfGW456L13_277at 325.532 kb on - strand, within PfGW456L13_277at 325.733 kb on + strand, within PfGW456L13_277at 325.733 kb on + strand, within PfGW456L13_277at 325.733 kb on + strand, within PfGW456L13_277at 325.734 kb on - strand, within PfGW456L13_277at 325.836 kb on + strand, within PfGW456L13_277at 325.852 kb on + strand, within PfGW456L13_277at 325.852 kb on + strand, within PfGW456L13_277at 325.852 kb on + strand, within PfGW456L13_277at 325.853 kb on - strand, within PfGW456L13_277at 325.853 kb on - strand, within PfGW456L13_277at 325.853 kb on - strand, within PfGW456L13_277at 325.853 kb on - strand, within PfGW456L13_277at 325.853 kb on - strand, within PfGW456L13_277at 325.922 kb on + strand, within PfGW456L13_277at 325.922 kb on + strand, within PfGW456L13_277at 325.922 kb on + strand, within PfGW456L13_277at 325.922 kb on + strand, within PfGW456L13_277at 325.923 kb on - strand, within PfGW456L13_277at 325.923 kb on - strand, within PfGW456L13_277at 325.923 kb on - strand, within PfGW456L13_277at 325.923 kb on - strand, within PfGW456L13_277at 325.936 kb on + strand, within PfGW456L13_277at 325.936 kb on + strand, within PfGW456L13_277at 325.936 kb on + strand, within PfGW456L13_277at 325.936 kb on + strand, within PfGW456L13_277at 325.936 kb on + strand, within PfGW456L13_277at 325.937 kb on - strand, within PfGW456L13_277at 325.937 kb on - strand, within PfGW456L13_277at 325.945 kb on + strand, within PfGW456L13_277at 326.070 kb on + strand, within PfGW456L13_277at 326.071 kb on - strand, within PfGW456L13_277at 326.071 kb on - strand, within PfGW456L13_277at 326.071 kb on - strand, within PfGW456L13_277at 326.115 kb on + strand, within PfGW456L13_277at 326.115 kb on + strand, within PfGW456L13_277at 326.115 kb on + strand, within PfGW456L13_277at 326.115 kb on + strand, within PfGW456L13_277at 326.115 kb on + strand, within PfGW456L13_277at 326.115 kb on + strand, within PfGW456L13_277at 326.115 kb on + strand, within PfGW456L13_277at 326.115 kb on + strand, within PfGW456L13_277at 326.116 kb on - strand, within PfGW456L13_277at 326.116 kb on - strand, within PfGW456L13_277at 326.116 kb on - strand, within PfGW456L13_277at 326.116 kb on - strand, within PfGW456L13_277at 326.116 kb on - strand, within PfGW456L13_277at 326.116 kb on - strand, within PfGW456L13_277at 326.116 kb on - strand, within PfGW456L13_277at 326.116 kb on - strand, within PfGW456L13_277at 326.116 kb on - strand, within PfGW456L13_277at 326.116 kb on - strand, within PfGW456L13_277at 326.116 kb on - strand, within PfGW456L13_277at 326.116 kb on - strand, within PfGW456L13_277at 326.116 kb on - strand, within PfGW456L13_277at 326.292 kb on + strand, within PfGW456L13_277at 326.293 kb on - strand, within PfGW456L13_277at 326.309 kb on + strand, within PfGW456L13_277at 326.309 kb on + strand, within PfGW456L13_277at 326.310 kb on - strand, within PfGW456L13_277at 326.316 kb on + strand, within PfGW456L13_277at 326.317 kb on - strand, within PfGW456L13_277at 326.317 kb on - strand, within PfGW456L13_277at 326.595 kb on + strandat 326.595 kb on + strandat 326.595 kb on + strandat 326.596 kb on - strandat 326.616 kb on + strandat 326.617 kb on - strandat 326.658 kb on + strandat 326.659 kb on - strandat 326.672 kb on + strandat 326.852 kb on + strand, within PfGW456L13_278at 326.852 kb on + strand, within PfGW456L13_278at 326.852 kb on + strand, within PfGW456L13_278at 326.853 kb on - strand, within PfGW456L13_278at 326.918 kb on + strand, within PfGW456L13_278at 326.918 kb on + strand, within PfGW456L13_278at 326.919 kb on - strand, within PfGW456L13_278at 326.919 kb on - strand, within PfGW456L13_278at 327.029 kb on + strand, within PfGW456L13_278at 327.029 kb on + strand, within PfGW456L13_278at 327.029 kb on + strand, within PfGW456L13_278at 327.029 kb on + strand, within PfGW456L13_278at 327.030 kb on - strand, within PfGW456L13_278at 327.030 kb on - strand, within PfGW456L13_278at 327.045 kb on - strand, within PfGW456L13_278at 327.045 kb on - strand, within PfGW456L13_278at 327.055 kb on + strand, within PfGW456L13_278at 327.056 kb on - strand, within PfGW456L13_278at 327.056 kb on - strand, within PfGW456L13_278at 327.056 kb on - strand, within PfGW456L13_278at 327.107 kb on + strand, within PfGW456L13_278at 327.107 kb on + strand, within PfGW456L13_278at 327.107 kb on + strand, within PfGW456L13_278at 327.107 kb on + strand, within PfGW456L13_278at 327.108 kb on - strand, within PfGW456L13_278at 327.108 kb on - strand, within PfGW456L13_278at 327.108 kb on - strand, within PfGW456L13_278at 327.125 kb on + strand, within PfGW456L13_278at 327.125 kb on + strand, within PfGW456L13_278at 327.125 kb on + strand, within PfGW456L13_278at 327.125 kb on + strand, within PfGW456L13_278at 327.125 kb on + strand, within PfGW456L13_278at 327.125 kb on + strand, within PfGW456L13_278at 327.125 kb on + strand, within PfGW456L13_278at 327.126 kb on - strand, within PfGW456L13_278at 327.126 kb on - strand, within PfGW456L13_278at 327.126 kb on - strand, within PfGW456L13_278at 327.126 kb on - strand, within PfGW456L13_278at 327.220 kb on + strandat 327.220 kb on + strandat 327.220 kb on + strandat 327.221 kb on - strandat 327.226 kb on + strandat 327.226 kb on + strandat 327.227 kb on - strandat 327.275 kb on + strand, within PfGW456L13_279at 327.306 kb on - strand, within PfGW456L13_279at 327.358 kb on + strand, within PfGW456L13_279at 327.359 kb on - strand, within PfGW456L13_279at 327.397 kb on + strand, within PfGW456L13_279at 327.398 kb on - strand, within PfGW456L13_279at 327.398 kb on - strand, within PfGW456L13_279at 327.464 kb on + strand, within PfGW456L13_279at 327.565 kb on + strand, within PfGW456L13_279at 327.565 kb on + strand, within PfGW456L13_279at 327.565 kb on + strand, within PfGW456L13_279at 327.565 kb on + strand, within PfGW456L13_279at 327.565 kb on + strand, within PfGW456L13_279at 327.565 kb on + strand, within PfGW456L13_279at 327.565 kb on + strand, within PfGW456L13_279at 327.566 kb on - strand, within PfGW456L13_279at 327.566 kb on - strand, within PfGW456L13_279at 327.566 kb on - strand, within PfGW456L13_279

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.032 mg/ml
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323,804 - +0.7
323,944 + -0.2
323,964 + -0.0
324,067 - +0.3
324,095 + -1.2
324,095 + -0.7
324,096 - +0.0
324,096 - +0.9
324,096 - +0.0
324,107 + +0.0
324,107 + -1.0
324,288 + PfGW456L13_276 0.45 -0.4
324,289 - PfGW456L13_276 0.46 -1.1
324,623 + -0.4
324,624 - +0.4
324,639 + +0.3
324,639 + +0.1
324,640 - +0.7
324,725 + -0.1
324,725 + -0.7
324,725 + +0.4
324,725 + +0.1
324,725 + -0.3
324,725 + -1.0
324,725 + -0.9
324,725 + +0.1
324,725 + +1.1
324,725 + +1.5
324,725 + -0.5
324,725 + +0.1
324,725 + -0.7
324,725 + -1.3
324,726 - +0.6
324,726 - +0.3
324,726 - +0.1
324,726 - +1.7
324,726 - +0.3
324,726 - +0.2
324,726 - -0.2
324,726 - +0.4
324,729 + -0.2
324,729 + +0.3
324,729 + +0.1
324,729 + +0.1
324,729 + +0.7
324,729 + -0.1
324,730 - +0.3
324,730 - +0.7
324,730 - +1.2
324,730 - -0.0
324,730 - +0.1
324,746 + -1.6
324,831 + PfGW456L13_277 0.12 +0.4
324,832 - PfGW456L13_277 0.12 -0.5
324,832 - PfGW456L13_277 0.12 -0.5
325,193 + PfGW456L13_277 0.29 -0.5
325,193 + PfGW456L13_277 0.29 +1.3
325,309 + PfGW456L13_277 0.35 +1.3
325,310 - PfGW456L13_277 0.35 -0.0
325,310 - PfGW456L13_277 0.35 +0.8
325,310 - PfGW456L13_277 0.35 +0.5
325,418 - PfGW456L13_277 0.40 +0.8
325,418 - PfGW456L13_277 0.40 +0.8
325,531 + PfGW456L13_277 0.46 -0.4
325,531 + PfGW456L13_277 0.46 +0.1
325,531 + PfGW456L13_277 0.46 +1.0
325,532 - PfGW456L13_277 0.46 -0.1
325,733 + PfGW456L13_277 0.55 -1.4
325,733 + PfGW456L13_277 0.55 -0.2
325,733 + PfGW456L13_277 0.55 -0.4
325,734 - PfGW456L13_277 0.55 -0.8
325,836 + PfGW456L13_277 0.60 -0.0
325,852 + PfGW456L13_277 0.61 -0.2
325,852 + PfGW456L13_277 0.61 +0.6
325,852 + PfGW456L13_277 0.61 +0.1
325,853 - PfGW456L13_277 0.61 +0.3
325,853 - PfGW456L13_277 0.61 +0.1
325,853 - PfGW456L13_277 0.61 -0.5
325,853 - PfGW456L13_277 0.61 -0.4
325,853 - PfGW456L13_277 0.61 +0.6
325,922 + PfGW456L13_277 0.64 +0.5
325,922 + PfGW456L13_277 0.64 +0.2
325,922 + PfGW456L13_277 0.64 -0.9
325,922 + PfGW456L13_277 0.64 +0.3
325,923 - PfGW456L13_277 0.64 +0.3
325,923 - PfGW456L13_277 0.64 -0.1
325,923 - PfGW456L13_277 0.64 +1.3
325,923 - PfGW456L13_277 0.64 +0.8
325,936 + PfGW456L13_277 0.65 +0.0
325,936 + PfGW456L13_277 0.65 +0.3
325,936 + PfGW456L13_277 0.65 +0.5
325,936 + PfGW456L13_277 0.65 -0.1
325,936 + PfGW456L13_277 0.65 +0.1
325,937 - PfGW456L13_277 0.65 +0.0
325,937 - PfGW456L13_277 0.65 +0.3
325,945 + PfGW456L13_277 0.66 +0.4
326,070 + PfGW456L13_277 0.72 -0.2
326,071 - PfGW456L13_277 0.72 +0.6
326,071 - PfGW456L13_277 0.72 -0.4
326,071 - PfGW456L13_277 0.72 -0.3
326,115 + PfGW456L13_277 0.74 -0.1
326,115 + PfGW456L13_277 0.74 +0.4
326,115 + PfGW456L13_277 0.74 +1.1
326,115 + PfGW456L13_277 0.74 +1.1
326,115 + PfGW456L13_277 0.74 +0.1
326,115 + PfGW456L13_277 0.74 -0.2
326,115 + PfGW456L13_277 0.74 +0.8
326,115 + PfGW456L13_277 0.74 -0.7
326,116 - PfGW456L13_277 0.74 +0.3
326,116 - PfGW456L13_277 0.74 -3.0
326,116 - PfGW456L13_277 0.74 +0.1
326,116 - PfGW456L13_277 0.74 +0.6
326,116 - PfGW456L13_277 0.74 +0.4
326,116 - PfGW456L13_277 0.74 +0.8
326,116 - PfGW456L13_277 0.74 +0.3
326,116 - PfGW456L13_277 0.74 +0.6
326,116 - PfGW456L13_277 0.74 -1.4
326,116 - PfGW456L13_277 0.74 -0.1
326,116 - PfGW456L13_277 0.74 -0.1
326,116 - PfGW456L13_277 0.74 -0.3
326,116 - PfGW456L13_277 0.74 +0.2
326,292 + PfGW456L13_277 0.82 -1.2
326,293 - PfGW456L13_277 0.82 +0.3
326,309 + PfGW456L13_277 0.83 -0.1
326,309 + PfGW456L13_277 0.83 -0.7
326,310 - PfGW456L13_277 0.83 +1.3
326,316 + PfGW456L13_277 0.83 +0.8
326,317 - PfGW456L13_277 0.84 +1.1
326,317 - PfGW456L13_277 0.84 +0.1
326,595 + +0.0
326,595 + +0.6
326,595 + +0.3
326,596 - +0.3
326,616 + -0.3
326,617 - -0.1
326,658 + -0.7
326,659 - -0.3
326,672 + +1.3
326,852 + PfGW456L13_278 0.34 +0.2
326,852 + PfGW456L13_278 0.34 -0.1
326,852 + PfGW456L13_278 0.34 -0.0
326,853 - PfGW456L13_278 0.34 +1.7
326,918 + PfGW456L13_278 0.47 -0.7
326,918 + PfGW456L13_278 0.47 +0.6
326,919 - PfGW456L13_278 0.47 -2.1
326,919 - PfGW456L13_278 0.47 +1.4
327,029 + PfGW456L13_278 0.68 +0.6
327,029 + PfGW456L13_278 0.68 -0.6
327,029 + PfGW456L13_278 0.68 +0.7
327,029 + PfGW456L13_278 0.68 +0.3
327,030 - PfGW456L13_278 0.68 +0.1
327,030 - PfGW456L13_278 0.68 +0.6
327,045 - PfGW456L13_278 0.71 +0.7
327,045 - PfGW456L13_278 0.71 -0.9
327,055 + PfGW456L13_278 0.73 -0.3
327,056 - PfGW456L13_278 0.73 +0.2
327,056 - PfGW456L13_278 0.73 -0.8
327,056 - PfGW456L13_278 0.73 -2.2
327,107 + PfGW456L13_278 0.83 +0.3
327,107 + PfGW456L13_278 0.83 -0.1
327,107 + PfGW456L13_278 0.83 -0.9
327,107 + PfGW456L13_278 0.83 +0.4
327,108 - PfGW456L13_278 0.83 -0.5
327,108 - PfGW456L13_278 0.83 +2.4
327,108 - PfGW456L13_278 0.83 -0.5
327,125 + PfGW456L13_278 0.86 +0.2
327,125 + PfGW456L13_278 0.86 +0.6
327,125 + PfGW456L13_278 0.86 +0.9
327,125 + PfGW456L13_278 0.86 +1.4
327,125 + PfGW456L13_278 0.86 +0.3
327,125 + PfGW456L13_278 0.86 -0.7
327,125 + PfGW456L13_278 0.86 +0.0
327,126 - PfGW456L13_278 0.86 +0.0
327,126 - PfGW456L13_278 0.86 +0.4
327,126 - PfGW456L13_278 0.86 -1.5
327,126 - PfGW456L13_278 0.86 -0.6
327,220 + +0.2
327,220 + -0.9
327,220 + +0.3
327,221 - -0.7
327,226 + -1.1
327,226 + -0.0
327,227 - +0.2
327,275 + PfGW456L13_279 0.13 -0.0
327,306 - PfGW456L13_279 0.18 +0.2
327,358 + PfGW456L13_279 0.26 +0.8
327,359 - PfGW456L13_279 0.26 +0.1
327,397 + PfGW456L13_279 0.32 +0.8
327,398 - PfGW456L13_279 0.33 -0.5
327,398 - PfGW456L13_279 0.33 +0.5
327,464 + PfGW456L13_279 0.43 +0.3
327,565 + PfGW456L13_279 0.59 +0.3
327,565 + PfGW456L13_279 0.59 -0.1
327,565 + PfGW456L13_279 0.59 +0.8
327,565 + PfGW456L13_279 0.59 -0.9
327,565 + PfGW456L13_279 0.59 +1.4
327,565 + PfGW456L13_279 0.59 -0.1
327,565 + PfGW456L13_279 0.59 -0.2
327,566 - PfGW456L13_279 0.59 -0.9
327,566 - PfGW456L13_279 0.59 -0.3
327,566 - PfGW456L13_279 0.59 +0.0

Or see this region's nucleotide sequence