Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS28475

Experiment: L-Arabinose (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Arabinose (C); with MOPS
6,334,111	+		PFLU_RS28465	0.86	-1.9
6,334,111	+		PFLU_RS28465	0.86	+0.6
6,334,111	+		PFLU_RS28465	0.86	-1.2
6,334,111	+		PFLU_RS28465	0.86	-1.9
6,334,111	+		PFLU_RS28465	0.86	-1.8
6,334,111	+		PFLU_RS28465	0.86	+0.9
6,334,111	+		PFLU_RS28465	0.86	-1.5
6,334,112	-		PFLU_RS28465	0.86	+1.0
6,334,112	-		PFLU_RS28465	0.86	-0.2
6,334,112	-		PFLU_RS28465	0.86	-1.6
6,334,112	-		PFLU_RS28465	0.86	-2.1
6,334,112	-		PFLU_RS28465	0.86	-2.4
6,334,112	-		PFLU_RS28465	0.86	-1.3
6,334,112	-		PFLU_RS28465	0.86	+0.7
6,334,112	-		PFLU_RS28465	0.86	-1.7
6,334,112	-		PFLU_RS28465	0.86	-2.0
6,334,113	+		PFLU_RS28465	0.86	-1.2
6,334,129	+		PFLU_RS28465	0.88	-2.9
6,334,129	+		PFLU_RS28465	0.88	-0.7
6,334,129	+		PFLU_RS28465	0.88	-1.9
6,334,130	-		PFLU_RS28465	0.88	-0.8
6,334,130	-		PFLU_RS28465	0.88	-1.0
6,334,130	-		PFLU_RS28465	0.88	-0.7
6,334,130	-		PFLU_RS28465	0.88	-0.7
6,334,130	-		PFLU_RS28465	0.88	-0.8
6,334,130	-		PFLU_RS28465	0.88	+0.3
6,334,169	+				-2.8
6,334,169	+				-1.2
6,334,169	+				-0.9
6,334,169	+				-0.8
6,334,169	+				+0.1
6,334,170	-				-1.6
6,334,170	-				+0.0
6,334,170	-				-0.3
6,334,275	+				-0.3
6,334,276	-				-0.4
6,334,276	-				-1.6
6,334,429	+		PFLU_RS28470	0.19	+0.2
6,334,429	+		PFLU_RS28470	0.19	+0.1
6,334,429	+		PFLU_RS28470	0.19	-0.5
6,334,429	+		PFLU_RS28470	0.19	+1.9
6,334,430	-		PFLU_RS28470	0.19	-1.1
6,334,430	-		PFLU_RS28470	0.19	+2.1
6,334,430	-		PFLU_RS28470	0.19	-0.5
6,334,488	+		PFLU_RS28470	0.28	-0.1
6,334,489	-		PFLU_RS28470	0.28	-1.3
6,334,704	+		PFLU_RS28470	0.63	+1.5
6,334,705	-		PFLU_RS28470	0.63	+1.8
6,334,806	+		PFLU_RS28470	0.80	+1.0
6,334,807	-		PFLU_RS28470	0.80	+1.6
6,334,832	+		PFLU_RS28470	0.84	-1.3
6,334,832	+		PFLU_RS28470	0.84	+1.7
6,334,833	-		PFLU_RS28470	0.84	+0.1
6,334,890	+				+1.0
6,334,890	+				+0.4
6,334,891	-				-0.7
6,334,891	-				+0.5
6,334,891	-				+0.5
6,334,891	-				+2.3
6,334,891	-				-0.1
6,334,893	+				+0.6
6,334,893	+				+0.8
6,334,893	+				+1.8
6,334,894	-				-0.3
6,334,894	-				-0.1
6,334,894	-				+0.7
6,334,894	-				-0.4
6,335,022	+				+0.3
6,335,022	+				+1.8
6,335,023	-				+0.9
6,335,023	-				-0.1
6,335,049	+				-0.3
6,335,339	+		PFLU_RS28475	0.23	-0.4
6,335,340	-		PFLU_RS28475	0.23	+1.5
6,335,340	-		PFLU_RS28475	0.23	-0.8
6,335,340	-		PFLU_RS28475	0.23	+0.2
6,335,441	+		PFLU_RS28475	0.33	-0.3
6,335,441	+		PFLU_RS28475	0.33	-2.3
6,335,442	-		PFLU_RS28475	0.33	+1.5
6,335,442	-		PFLU_RS28475	0.33	-0.8
6,335,442	-		PFLU_RS28475	0.33	+0.0
6,335,442	-		PFLU_RS28475	0.33	-1.7
6,335,442	-		PFLU_RS28475	0.33	+1.3
6,335,442	-		PFLU_RS28475	0.33	-0.1
6,335,516	+		PFLU_RS28475	0.41	+0.4
6,335,516	+		PFLU_RS28475	0.41	-1.2
6,335,517	-		PFLU_RS28475	0.41	+1.0
6,335,517	-		PFLU_RS28475	0.41	-0.9
6,335,517	-		PFLU_RS28475	0.41	-0.9
6,335,517	-		PFLU_RS28475	0.41	+0.9
6,335,669	+		PFLU_RS28475	0.56	-0.2
6,335,702	+		PFLU_RS28475	0.60	-0.7
6,335,702	+		PFLU_RS28475	0.60	+1.8
6,335,702	+		PFLU_RS28475	0.60	-2.5
6,335,702	+		PFLU_RS28475	0.60	+0.2
6,335,702	+		PFLU_RS28475	0.60	-0.6
6,335,702	+		PFLU_RS28475	0.60	-0.5
6,335,702	+		PFLU_RS28475	0.60	-0.6
6,335,702	+		PFLU_RS28475	0.60	+0.9
6,335,702	+		PFLU_RS28475	0.60	+0.3
6,335,702	+		PFLU_RS28475	0.60	+0.1
6,335,703	-		PFLU_RS28475	0.60	+0.9
6,335,703	-		PFLU_RS28475	0.60	+0.5
6,335,703	-		PFLU_RS28475	0.60	-1.9
6,335,703	-		PFLU_RS28475	0.60	-0.8
6,335,703	-		PFLU_RS28475	0.60	-1.7
6,335,703	-		PFLU_RS28475	0.60	+0.3
6,335,705	-		PFLU_RS28475	0.60	-0.1
6,335,858	+		PFLU_RS28475	0.75	-0.4
6,335,858	+		PFLU_RS28475	0.75	-0.1
6,335,859	-		PFLU_RS28475	0.75	+0.2
6,335,859	-		PFLU_RS28475	0.75	-0.9
6,335,859	-		PFLU_RS28475	0.75	-2.0
6,335,859	-		PFLU_RS28475	0.75	-1.5
6,335,859	-		PFLU_RS28475	0.75	+1.4
6,335,882	+		PFLU_RS28475	0.78	+0.6
6,335,882	+		PFLU_RS28475	0.78	-0.3
6,335,885	+		PFLU_RS28475	0.78	-0.8
6,335,885	+		PFLU_RS28475	0.78	+0.1
6,335,885	+		PFLU_RS28475	0.78	+0.2
6,335,885	+		PFLU_RS28475	0.78	-0.3
6,335,885	+		PFLU_RS28475	0.78	+0.0
6,335,885	+		PFLU_RS28475	0.78	-0.1
6,335,886	-		PFLU_RS28475	0.78	+1.2
6,335,886	-		PFLU_RS28475	0.78	-1.4
6,335,886	-		PFLU_RS28475	0.78	+3.5
6,335,886	-		PFLU_RS28475	0.78	-0.5
6,336,057	-				+0.5
6,336,060	-				-0.7
6,336,060	-				-1.5
6,336,060	-				+0.5
6,336,060	-				+0.8
6,336,060	-				+0.1
6,336,060	-				-0.3
6,336,151	+				-2.2
6,336,151	+				-0.0
6,336,151	+				-2.0
6,336,151	+				-1.4
6,336,151	+				+1.6
6,336,151	+				+0.2
6,336,151	+				-0.6
6,336,152	-				+0.9
6,336,152	-				+0.1
6,336,152	-				-0.8
6,336,152	-				-1.3
6,336,152	-				+0.1
6,336,152	-				-0.8
6,336,152	-				-2.3
6,336,152	-				-0.5
6,336,227	-		PFLU_RS28480	0.16	-0.7
6,336,227	-		PFLU_RS28480	0.16	-0.3
6,336,453	+		PFLU_RS28480	0.42	-1.2
6,336,453	+		PFLU_RS28480	0.42	+0.9
6,336,453	+		PFLU_RS28480	0.42	+1.0
6,336,454	-		PFLU_RS28480	0.43	+0.4
6,336,454	-		PFLU_RS28480	0.43	+1.8
6,336,454	-		PFLU_RS28480	0.43	+0.4
6,336,454	-		PFLU_RS28480	0.43	+1.5
6,336,454	-		PFLU_RS28480	0.43	+0.3
6,336,454	-		PFLU_RS28480	0.43	-0.1
6,336,494	+		PFLU_RS28480	0.47	-0.0
6,336,584	+		PFLU_RS28480	0.58	-0.1
6,336,584	+		PFLU_RS28480	0.58	+0.1
6,336,584	+		PFLU_RS28480	0.58	-1.4
6,336,640	+		PFLU_RS28480	0.64	-0.4
6,336,640	+		PFLU_RS28480	0.64	+0.2
6,336,641	-		PFLU_RS28480	0.64	+1.0
6,336,641	-		PFLU_RS28480	0.64	+0.6
6,336,641	-		PFLU_RS28480	0.64	-2.6
6,336,661	+		PFLU_RS28480	0.67	-0.3
6,336,662	-		PFLU_RS28480	0.67	-0.2
6,336,662	-		PFLU_RS28480	0.67	-1.9
6,336,797	-		PFLU_RS28480	0.83	+0.4
6,336,827	-		PFLU_RS28480	0.86	+0.2
6,336,827	-		PFLU_RS28480	0.86	-1.5
6,336,955	+				+0.3
6,336,955	+				-2.0
6,336,955	+				-0.3
6,336,955	+				+2.6
6,336,955	+				-1.2
6,336,955	+				+0.9
6,336,955	+				+0.8
6,336,956	-				+0.7
6,336,956	-				-2.1
6,336,956	-				-2.1
6,336,956	-				-0.7
6,336,979	+				+1.4
6,336,979	+				-1.5
6,336,979	+				-1.5
6,336,979	+				-0.8
6,336,979	+				-0.2
6,336,980	-				-1.8
6,336,980	-				+0.6
6,336,980	-				-2.2
6,336,980	-				+0.9
6,337,015	+				+0.5
6,337,015	+				-1.5
6,337,016	-				-1.3
6,337,016	-				-0.0
6,337,093	+		PFLU_RS28485	0.17	-0.0
6,337,093	+		PFLU_RS28485	0.17	+1.1
6,337,094	-		PFLU_RS28485	0.17	-1.7