Experiment: L-Arabinose (C); with MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS24865 and PFLU_RS24870 are separated by 2 nucleotides PFLU_RS24870 and PFLU_RS24875 are separated by 145 nucleotides PFLU_RS24875 and PFLU_RS24880 are separated by 223 nucleotides PFLU_RS24880 and PFLU_RS24885 are separated by 124 nucleotides
PFLU_RS24865: PFLU_RS24865 - serine O-acetyltransferase, at 5,568,173 to 5,568,958
_RS24865
PFLU_RS24870: PFLU_RS24870 - tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ, at 5,568,961 to 5,569,731
_RS24870
PFLU_RS24875: PFLU_RS24875 - inositol monophosphatase, at 5,569,877 to 5,570,692
_RS24875
PFLU_RS24880: PFLU_RS24880 - glycine zipper 2TM domain-containing protein, at 5,570,916 to 5,571,458
_RS24880
PFLU_RS24885: PFLU_RS24885 - protein translocase subunit SecF, at 5,571,583 to 5,572,497
_RS24885
Position (kb) 5569
5570
5571 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5568.963 kb on - strand at 5568.976 kb on - strand at 5568.976 kb on - strand at 5569.027 kb on + strand at 5569.027 kb on + strand at 5569.027 kb on + strand at 5569.027 kb on + strand at 5569.027 kb on + strand at 5569.027 kb on + strand at 5569.027 kb on + strand at 5569.027 kb on + strand at 5569.027 kb on + strand at 5569.027 kb on + strand at 5569.028 kb on - strand at 5569.028 kb on - strand at 5569.028 kb on - strand at 5569.028 kb on - strand at 5569.028 kb on - strand at 5569.028 kb on - strand at 5569.029 kb on + strand at 5569.029 kb on + strand at 5569.029 kb on + strand at 5569.029 kb on + strand at 5569.029 kb on + strand at 5569.029 kb on + strand at 5569.029 kb on + strand at 5569.029 kb on + strand at 5569.029 kb on + strand at 5569.029 kb on + strand at 5569.029 kb on + strand at 5569.029 kb on + strand at 5569.030 kb on - strand at 5569.030 kb on - strand at 5569.030 kb on - strand at 5569.030 kb on - strand at 5569.030 kb on - strand at 5569.030 kb on - strand at 5569.030 kb on - strand at 5569.030 kb on - strand at 5569.064 kb on + strand, within PFLU_RS24870 at 5569.065 kb on - strand, within PFLU_RS24870 at 5569.152 kb on - strand, within PFLU_RS24870 at 5569.269 kb on - strand, within PFLU_RS24870 at 5569.269 kb on - strand, within PFLU_RS24870 at 5569.340 kb on + strand, within PFLU_RS24870 at 5569.340 kb on + strand, within PFLU_RS24870 at 5569.340 kb on + strand, within PFLU_RS24870 at 5569.699 kb on - strand at 5569.771 kb on - strand at 5569.782 kb on + strand at 5569.782 kb on + strand at 5569.782 kb on + strand at 5569.783 kb on - strand at 5569.783 kb on - strand at 5569.783 kb on - strand at 5569.788 kb on + strand at 5569.788 kb on + strand at 5569.788 kb on + strand at 5569.788 kb on + strand at 5569.789 kb on - strand at 5569.789 kb on - strand at 5569.802 kb on + strand at 5569.863 kb on + strand at 5570.691 kb on - strand at 5570.691 kb on - strand at 5570.734 kb on - strand at 5570.825 kb on + strand at 5570.826 kb on - strand at 5570.826 kb on - strand at 5570.826 kb on - strand at 5570.902 kb on + strand at 5570.903 kb on - strand at 5570.917 kb on + strand at 5570.918 kb on - strand at 5570.990 kb on + strand, within PFLU_RS24880 at 5571.035 kb on - strand, within PFLU_RS24880 at 5571.071 kb on + strand, within PFLU_RS24880 at 5571.071 kb on + strand, within PFLU_RS24880 at 5571.071 kb on + strand, within PFLU_RS24880 at 5571.071 kb on + strand, within PFLU_RS24880 at 5571.071 kb on + strand, within PFLU_RS24880 at 5571.071 kb on + strand, within PFLU_RS24880 at 5571.071 kb on + strand, within PFLU_RS24880 at 5571.072 kb on - strand, within PFLU_RS24880 at 5571.072 kb on - strand, within PFLU_RS24880 at 5571.072 kb on - strand, within PFLU_RS24880 at 5571.072 kb on - strand, within PFLU_RS24880 at 5571.094 kb on + strand, within PFLU_RS24880 at 5571.094 kb on + strand, within PFLU_RS24880 at 5571.094 kb on + strand, within PFLU_RS24880 at 5571.094 kb on + strand, within PFLU_RS24880 at 5571.094 kb on + strand, within PFLU_RS24880 at 5571.094 kb on + strand, within PFLU_RS24880 at 5571.094 kb on + strand, within PFLU_RS24880 at 5571.094 kb on + strand, within PFLU_RS24880 at 5571.095 kb on - strand, within PFLU_RS24880 at 5571.095 kb on - strand, within PFLU_RS24880 at 5571.095 kb on - strand, within PFLU_RS24880 at 5571.095 kb on - strand, within PFLU_RS24880 at 5571.095 kb on - strand, within PFLU_RS24880 at 5571.095 kb on - strand, within PFLU_RS24880 at 5571.095 kb on - strand, within PFLU_RS24880 at 5571.095 kb on - strand, within PFLU_RS24880 at 5571.095 kb on - strand, within PFLU_RS24880 at 5571.095 kb on - strand, within PFLU_RS24880 at 5571.113 kb on + strand, within PFLU_RS24880 at 5571.113 kb on + strand, within PFLU_RS24880 at 5571.113 kb on + strand, within PFLU_RS24880 at 5571.113 kb on + strand, within PFLU_RS24880 at 5571.114 kb on - strand, within PFLU_RS24880 at 5571.114 kb on - strand, within PFLU_RS24880 at 5571.114 kb on - strand, within PFLU_RS24880 at 5571.114 kb on - strand, within PFLU_RS24880 at 5571.139 kb on + strand, within PFLU_RS24880 at 5571.139 kb on + strand, within PFLU_RS24880 at 5571.163 kb on - strand, within PFLU_RS24880 at 5571.180 kb on - strand, within PFLU_RS24880 at 5571.211 kb on - strand, within PFLU_RS24880 at 5571.317 kb on + strand, within PFLU_RS24880 at 5571.318 kb on - strand, within PFLU_RS24880 at 5571.385 kb on + strand, within PFLU_RS24880 at 5571.385 kb on + strand, within PFLU_RS24880 at 5571.385 kb on + strand, within PFLU_RS24880 at 5571.385 kb on + strand, within PFLU_RS24880 at 5571.385 kb on + strand, within PFLU_RS24880 at 5571.386 kb on - strand, within PFLU_RS24880 at 5571.386 kb on - strand, within PFLU_RS24880 at 5571.386 kb on - strand, within PFLU_RS24880 at 5571.386 kb on - strand, within PFLU_RS24880 at 5571.386 kb on - strand, within PFLU_RS24880 at 5571.502 kb on + strand at 5571.503 kb on - strand at 5571.504 kb on + strand at 5571.505 kb on - strand at 5571.560 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C); with MOPS remove 5,568,963 - -0.1 5,568,976 - +0.6 5,568,976 - -1.3 5,569,027 + -2.2 5,569,027 + -1.3 5,569,027 + -1.0 5,569,027 + -2.1 5,569,027 + +0.7 5,569,027 + -0.1 5,569,027 + +0.7 5,569,027 + +0.3 5,569,027 + +1.4 5,569,027 + +0.5 5,569,028 - +1.1 5,569,028 - +0.8 5,569,028 - +0.6 5,569,028 - -0.4 5,569,028 - -0.2 5,569,028 - +0.7 5,569,029 + +2.6 5,569,029 + +0.9 5,569,029 + -0.4 5,569,029 + +0.1 5,569,029 + +2.3 5,569,029 + -1.3 5,569,029 + -0.1 5,569,029 + -0.4 5,569,029 + +0.0 5,569,029 + -0.3 5,569,029 + +0.3 5,569,029 + -1.5 5,569,030 - -0.1 5,569,030 - +0.7 5,569,030 - -1.9 5,569,030 - -0.4 5,569,030 - -1.5 5,569,030 - -0.6 5,569,030 - +1.7 5,569,030 - +0.3 5,569,064 + PFLU_RS24870 0.13 +1.0 5,569,065 - PFLU_RS24870 0.13 -0.3 5,569,152 - PFLU_RS24870 0.25 -0.6 5,569,269 - PFLU_RS24870 0.40 -1.2 5,569,269 - PFLU_RS24870 0.40 +1.1 5,569,340 + PFLU_RS24870 0.49 +1.4 5,569,340 + PFLU_RS24870 0.49 +0.1 5,569,340 + PFLU_RS24870 0.49 -1.4 5,569,699 - +1.0 5,569,771 - -1.2 5,569,782 + +0.8 5,569,782 + +0.4 5,569,782 + +0.3 5,569,783 - +0.8 5,569,783 - +1.9 5,569,783 - -1.5 5,569,788 + +1.9 5,569,788 + -0.2 5,569,788 + +0.1 5,569,788 + -1.3 5,569,789 - -3.1 5,569,789 - -1.7 5,569,802 + -1.2 5,569,863 + +2.7 5,570,691 - +3.0 5,570,691 - -2.5 5,570,734 - +0.6 5,570,825 + -0.4 5,570,826 - -1.0 5,570,826 - -0.1 5,570,826 - -0.9 5,570,902 + -0.7 5,570,903 - +0.1 5,570,917 + -1.3 5,570,918 - -0.8 5,570,990 + PFLU_RS24880 0.14 -1.7 5,571,035 - PFLU_RS24880 0.22 +1.0 5,571,071 + PFLU_RS24880 0.29 -0.3 5,571,071 + PFLU_RS24880 0.29 -0.2 5,571,071 + PFLU_RS24880 0.29 -0.2 5,571,071 + PFLU_RS24880 0.29 +0.8 5,571,071 + PFLU_RS24880 0.29 +0.1 5,571,071 + PFLU_RS24880 0.29 +1.6 5,571,071 + PFLU_RS24880 0.29 -0.2 5,571,072 - PFLU_RS24880 0.29 -0.0 5,571,072 - PFLU_RS24880 0.29 +0.3 5,571,072 - PFLU_RS24880 0.29 +0.1 5,571,072 - PFLU_RS24880 0.29 -0.1 5,571,094 + PFLU_RS24880 0.33 -0.6 5,571,094 + PFLU_RS24880 0.33 +0.6 5,571,094 + PFLU_RS24880 0.33 -0.4 5,571,094 + PFLU_RS24880 0.33 -0.5 5,571,094 + PFLU_RS24880 0.33 -0.1 5,571,094 + PFLU_RS24880 0.33 -0.1 5,571,094 + PFLU_RS24880 0.33 +0.6 5,571,094 + PFLU_RS24880 0.33 -1.6 5,571,095 - PFLU_RS24880 0.33 +0.7 5,571,095 - PFLU_RS24880 0.33 -0.1 5,571,095 - PFLU_RS24880 0.33 +0.3 5,571,095 - PFLU_RS24880 0.33 -0.8 5,571,095 - PFLU_RS24880 0.33 -1.5 5,571,095 - PFLU_RS24880 0.33 +0.8 5,571,095 - PFLU_RS24880 0.33 -0.8 5,571,095 - PFLU_RS24880 0.33 +0.7 5,571,095 - PFLU_RS24880 0.33 -0.4 5,571,095 - PFLU_RS24880 0.33 +1.2 5,571,113 + PFLU_RS24880 0.36 +0.6 5,571,113 + PFLU_RS24880 0.36 -0.1 5,571,113 + PFLU_RS24880 0.36 -1.4 5,571,113 + PFLU_RS24880 0.36 -1.9 5,571,114 - PFLU_RS24880 0.36 -1.4 5,571,114 - PFLU_RS24880 0.36 -1.1 5,571,114 - PFLU_RS24880 0.36 +0.2 5,571,114 - PFLU_RS24880 0.36 -2.2 5,571,139 + PFLU_RS24880 0.41 +0.6 5,571,139 + PFLU_RS24880 0.41 +2.5 5,571,163 - PFLU_RS24880 0.45 -1.1 5,571,180 - PFLU_RS24880 0.49 -0.0 5,571,211 - PFLU_RS24880 0.54 +0.7 5,571,317 + PFLU_RS24880 0.74 +0.9 5,571,318 - PFLU_RS24880 0.74 -0.2 5,571,385 + PFLU_RS24880 0.86 -0.4 5,571,385 + PFLU_RS24880 0.86 -1.2 5,571,385 + PFLU_RS24880 0.86 +0.5 5,571,385 + PFLU_RS24880 0.86 +2.1 5,571,385 + PFLU_RS24880 0.86 +0.7 5,571,386 - PFLU_RS24880 0.87 -2.5 5,571,386 - PFLU_RS24880 0.87 -0.2 5,571,386 - PFLU_RS24880 0.87 -0.2 5,571,386 - PFLU_RS24880 0.87 -1.9 5,571,386 - PFLU_RS24880 0.87 -1.2 5,571,502 + +0.0 5,571,503 - -1.5 5,571,504 + -0.4 5,571,505 - +1.5 5,571,560 - +0.4
Or see this region's nucleotide sequence