Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS20410

Experiment: L-Arabinose (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Arabinose (C); with MOPS
4,604,049	+		PFLU_RS20400	0.43	-1.7
4,604,049	+		PFLU_RS20400	0.43	-1.7
4,604,049	+		PFLU_RS20400	0.43	+0.3
4,604,102	+		PFLU_RS20400	0.57	-0.7
4,604,124	-		PFLU_RS20400	0.63	+0.8
4,604,262	-				-0.5
4,604,262	-				+1.4
4,604,262	-				-0.5
4,604,266	+				+0.6
4,604,267	-				+0.6
4,604,267	-				-1.5
4,604,285	+				+0.4
4,604,286	-				-0.2
4,604,286	-				-0.0
4,604,292	+				-0.5
4,604,292	+				-0.2
4,604,292	+				+1.3
4,604,306	+				+2.6
4,604,320	+				+0.6
4,604,320	+				+1.7
4,604,320	+				+2.4
4,604,321	-				+1.1
4,604,321	-				+1.2
4,604,334	+				+1.1
4,604,335	-				-0.9
4,604,335	-				-2.5
4,604,335	-				+0.8
4,604,335	-				-0.0
4,604,335	-				+0.9
4,604,335	-				+2.5
4,604,346	+				+1.8
4,604,364	+				+0.5
4,604,364	+				+0.6
4,604,364	+				+2.4
4,604,364	+				+0.4
4,604,365	-				+1.3
4,604,365	-				+1.3
4,604,365	-				+0.9
4,604,377	+				+0.5
4,604,377	+				+0.7
4,604,377	+				+0.4
4,604,377	+				+1.7
4,604,377	+				-0.9
4,604,377	+				+2.4
4,604,377	+				+2.0
4,604,377	+				+1.9
4,604,378	-				+0.5
4,604,378	-				+1.3
4,604,378	-				+0.8
4,604,378	-				+0.4
4,604,397	+				-1.1
4,604,397	+				+2.7
4,604,397	+				+0.1
4,604,397	+				+0.2
4,604,397	+				+0.5
4,604,397	+				+1.8
4,604,398	-				-1.2
4,604,398	-				+1.4
4,604,398	-				+0.9
4,604,398	-				+0.1
4,604,398	-				+0.7
4,604,409	+				+1.4
4,604,409	+				+1.9
4,604,409	+				+1.2
4,604,409	+				+1.8
4,604,409	+				+1.0
4,604,410	-				+0.9
4,604,410	-				+1.1
4,604,410	-				-0.2
4,604,410	-				+0.4
4,604,446	-				+1.2
4,604,446	-				+0.7
4,604,446	-				-0.4
4,604,451	+				+0.1
4,604,451	+				-0.7
4,604,452	-				-0.0
4,604,452	-				-0.0
4,604,452	-				+1.0
4,604,456	+				+1.1
4,604,457	-				+1.2
4,604,457	-				-0.4
4,604,457	-				-1.1
4,604,457	-				-0.3
4,604,457	-				+0.8
4,604,457	-				+1.0
4,604,497	+				+0.1
4,604,497	+				+0.5
4,604,498	-				-0.3
4,604,503	+				-0.4
4,604,503	+				+0.2
4,604,503	+				+0.2
4,604,503	+				+1.5
4,604,525	+				+2.4
4,604,525	+				-2.5
4,604,525	+				-0.6
4,604,525	+				+0.7
4,604,525	+				+0.7
4,604,525	+				+1.4
4,604,525	+				-1.5
4,604,525	+				+1.2
4,604,525	+				-2.4
4,604,525	+				+0.6
4,604,525	+				+0.4
4,604,525	+				+0.6
4,604,525	+				+0.4
4,604,526	-				-0.8
4,604,526	-				+1.8
4,604,526	-				-0.3
4,604,526	-				+0.6
4,604,526	-				-2.1
4,604,526	-				-0.1
4,604,526	-				+0.1
4,604,526	-				+2.4
4,604,527	+				-0.9
4,604,527	+				-0.6
4,604,527	+				+0.7
4,604,527	+				+1.1
4,604,527	+				+1.3
4,604,527	+				-1.2
4,604,527	+				+0.5
4,604,527	+				+2.0
4,604,527	+				+1.0
4,604,528	-				+0.2
4,604,528	-				+0.8
4,604,528	-				-0.8
4,604,528	-				+0.7
4,604,528	-				+1.8
4,604,528	-				+0.4
4,604,528	-				-0.3
4,604,528	-				+1.0
4,604,554	+		PFLU_RS20405	0.17	+1.3
4,604,554	+		PFLU_RS20405	0.17	+3.8
4,604,608	+		PFLU_RS20405	0.45	-0.1
4,604,608	+		PFLU_RS20405	0.45	+0.1
4,604,661	+		PFLU_RS20405	0.72	+0.4
4,604,661	+		PFLU_RS20405	0.72	-1.6
4,604,661	+		PFLU_RS20405	0.72	+0.4
4,604,661	+		PFLU_RS20405	0.72	+1.9
4,604,662	-		PFLU_RS20405	0.73	-2.3
4,604,726	+				+0.4
4,604,749	-				-0.9
4,604,868	+				+0.4
4,604,869	-				+0.7
4,604,869	-				-3.0
4,604,869	-				+1.4
4,604,869	-				+1.0
4,604,869	-				-0.4
4,604,957	-		PFLU_RS20410	0.12	+0.5
4,604,957	-		PFLU_RS20410	0.12	+0.1
4,604,957	-		PFLU_RS20410	0.12	+2.7
4,604,957	-		PFLU_RS20410	0.12	-1.1
4,604,984	+		PFLU_RS20410	0.23	+0.7
4,605,010	+		PFLU_RS20410	0.33	-1.9
4,605,011	-		PFLU_RS20410	0.34	+0.4
4,605,011	-		PFLU_RS20410	0.34	+0.5
4,605,011	-		PFLU_RS20410	0.34	+0.3
4,605,017	+		PFLU_RS20410	0.36	+4.1
4,605,017	+		PFLU_RS20410	0.36	-1.0
4,605,018	-		PFLU_RS20410	0.37	-0.0
4,605,029	+		PFLU_RS20410	0.41	-1.3
4,605,029	+		PFLU_RS20410	0.41	-0.3
4,605,029	+		PFLU_RS20410	0.41	+0.3
4,605,029	+		PFLU_RS20410	0.41	-0.6
4,605,029	+		PFLU_RS20410	0.41	+1.4
4,605,029	+		PFLU_RS20410	0.41	+1.4
4,605,030	-		PFLU_RS20410	0.41	-0.1
4,605,030	-		PFLU_RS20410	0.41	+3.3
4,605,030	-		PFLU_RS20410	0.41	+0.4
4,605,030	-		PFLU_RS20410	0.41	+1.5
4,605,030	-		PFLU_RS20410	0.41	+0.2
4,605,092	-		PFLU_RS20410	0.66	+1.8
4,605,118	-		PFLU_RS20410	0.76	+0.7
4,605,118	-		PFLU_RS20410	0.76	-0.9
4,605,138	+		PFLU_RS20410	0.84	+1.2
4,605,138	+		PFLU_RS20410	0.84	-1.5
4,605,139	-		PFLU_RS20410	0.85	+0.6
4,605,139	-		PFLU_RS20410	0.85	-1.4
4,605,139	-		PFLU_RS20410	0.85	+0.5
4,605,139	-		PFLU_RS20410	0.85	-0.4
4,605,156	+				-0.3
4,605,157	-				-0.2
4,605,157	-				+0.6
4,605,157	-				-0.6
4,605,193	-				-1.2
4,605,193	-				-1.7
4,605,197	-				+0.9
4,605,197	-				-2.6
4,605,207	+				-1.1
4,605,208	-				-0.6
4,605,211	+				+0.7
4,605,212	-				+0.9
4,605,212	-				-1.6
4,605,231	+				+0.2
4,605,231	+				-0.3
4,605,231	+				+0.0
4,605,231	+				+1.2
4,605,231	+				-1.0
4,605,231	+				+1.7
4,605,231	+				-1.1
4,605,231	+				-1.0
4,605,231	+				+1.2
4,605,231	+				-0.3
4,605,231	+				-1.3
4,605,231	+				+0.3
4,605,231	+				+0.6
4,605,231	+				-2.1
4,605,231	+				+0.1
4,605,231	+				+0.1
4,605,231	+				-0.4
4,605,231	+				+1.1
4,605,231	+				+1.6
4,605,231	+				+1.1
4,605,231	+				-1.6
4,605,231	+				+1.8
4,605,231	+				-0.3
4,605,232	-				-0.3
4,605,232	-				+0.3
4,605,232	-				-0.5
4,605,232	-				-1.5
4,605,232	-				-1.7
4,605,232	-				-1.2
4,605,232	-				-1.0
4,605,232	-				+0.2
4,605,232	-				+1.1
4,605,232	-				+0.1
4,605,232	-				+2.4
4,605,232	-				+1.2
4,605,232	-				+1.4
4,605,232	-				+1.8
4,605,232	-				+0.6
4,605,232	-				-2.2
4,605,232	-				+1.4
4,605,232	-				+0.7
4,605,232	-				-1.1
4,605,232	-				-0.3
4,605,232	-				+0.0
4,605,254	+				+0.5
4,605,255	-				-0.2
4,605,286	+				+0.3
4,605,287	-				+0.4
4,605,287	-				-2.0
4,605,329	+		PFLU_RS20415	0.19	+0.1
4,605,329	+		PFLU_RS20415	0.19	-0.9
4,605,329	+		PFLU_RS20415	0.19	-0.2
4,605,330	-		PFLU_RS20415	0.20	+0.3
4,605,431	+		PFLU_RS20415	0.54	+0.1
4,605,506	-		PFLU_RS20415	0.80	-1.6
4,605,511	+		PFLU_RS20415	0.81	-1.7
4,605,511	+		PFLU_RS20415	0.81	+0.1
4,605,511	+		PFLU_RS20415	0.81	-0.3
4,605,512	-		PFLU_RS20415	0.82	+1.0
4,605,607	+				-0.2
4,605,607	+				+0.2
4,605,607	+				+0.2
4,605,608	-				+0.8
4,605,608	-				-0.1
4,605,608	-				+0.6
4,605,608	-				+0.9
4,605,608	-				-0.0
4,605,633	+				+0.6
4,605,633	+				-0.2
4,605,634	-				-0.8
4,605,634	-				-0.6
4,605,634	-				+0.0
4,605,634	-				-0.3
4,605,634	-				-0.1
4,605,640	-				+0.4
4,605,640	-				+0.7
4,605,640	-				-0.7
4,605,649	+				+1.1
4,605,650	-				-0.7
4,605,650	-				+0.3
4,605,688	+		PFLU_RS20420	0.15	-1.8
4,605,688	+		PFLU_RS20420	0.15	+0.4
4,605,688	+		PFLU_RS20420	0.15	+1.0
4,605,787	-		PFLU_RS20420	0.30	+0.7
4,605,787	-		PFLU_RS20420	0.30	-1.6
4,605,787	-		PFLU_RS20420	0.30	-1.9
4,605,814	+		PFLU_RS20420	0.34	-0.3
4,605,814	+		PFLU_RS20420	0.34	+0.1
4,605,814	+		PFLU_RS20420	0.34	+0.2
4,605,815	-		PFLU_RS20420	0.34	-0.1
4,605,815	-		PFLU_RS20420	0.34	+0.7
4,605,815	-		PFLU_RS20420	0.34	-2.8
4,605,815	-		PFLU_RS20420	0.34	-0.3
4,605,815	-		PFLU_RS20420	0.34	-0.6
4,605,963	+		PFLU_RS20420	0.56	-0.9
4,605,991	-		PFLU_RS20420	0.60	+1.4