Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS08100

Experiment: L-Arabinose (C); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS08095 and PFLU_RS08100 are separated by 9 nucleotidesPFLU_RS08100 and PFLU_RS08105 overlap by 8 nucleotides PFLU_RS08095: PFLU_RS08095 - prephenate dehydratase, at 1,805,695 to 1,806,789 _RS08095 PFLU_RS08100: PFLU_RS08100 - histidinol-phosphate transaminase, at 1,806,799 to 1,807,911 _RS08100 PFLU_RS08105: PFLU_RS08105 - bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase, at 1,807,904 to 1,810,150 _RS08105 Position (kb) 1806 1807 1808Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 1806.957 kb on + strand, within PFLU_RS08100at 1806.957 kb on + strand, within PFLU_RS08100at 1807.123 kb on + strand, within PFLU_RS08100at 1807.174 kb on + strand, within PFLU_RS08100at 1807.396 kb on + strand, within PFLU_RS08100at 1807.396 kb on + strand, within PFLU_RS08100at 1807.396 kb on + strand, within PFLU_RS08100at 1807.396 kb on + strand, within PFLU_RS08100at 1807.396 kb on + strand, within PFLU_RS08100at 1807.816 kb on + strandat 1807.816 kb on + strandat 1807.816 kb on + strandat 1807.816 kb on + strandat 1808.458 kb on + strand, within PFLU_RS08105at 1808.459 kb on - strand, within PFLU_RS08105at 1808.745 kb on + strand, within PFLU_RS08105at 1808.813 kb on + strand, within PFLU_RS08105at 1808.813 kb on + strand, within PFLU_RS08105at 1808.813 kb on + strand, within PFLU_RS08105

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C); with MOPS
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1,806,957 + PFLU_RS08100 0.14 +3.5
1,806,957 + PFLU_RS08100 0.14 -0.1
1,807,123 + PFLU_RS08100 0.29 -0.1
1,807,174 + PFLU_RS08100 0.34 +1.1
1,807,396 + PFLU_RS08100 0.54 -0.7
1,807,396 + PFLU_RS08100 0.54 +1.5
1,807,396 + PFLU_RS08100 0.54 -0.2
1,807,396 + PFLU_RS08100 0.54 +0.9
1,807,396 + PFLU_RS08100 0.54 +0.5
1,807,816 + +1.2
1,807,816 + -0.3
1,807,816 + -0.6
1,807,816 + +0.9
1,808,458 + PFLU_RS08105 0.25 +1.5
1,808,459 - PFLU_RS08105 0.25 +2.5
1,808,745 + PFLU_RS08105 0.37 +4.8
1,808,813 + PFLU_RS08105 0.40 +0.6
1,808,813 + PFLU_RS08105 0.40 -1.2
1,808,813 + PFLU_RS08105 0.40 +2.2

Or see this region's nucleotide sequence