Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS06905

Experiment: L-Arabinose (C); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS06900 and PFLU_RS06905 are separated by 242 nucleotidesPFLU_RS06905 and PFLU_RS06910 are separated by 18 nucleotidesPFLU_RS06910 and PFLU_RS06915 are separated by 28 nucleotides PFLU_RS06900: PFLU_RS06900 - beta-glucosidase BglX, at 1,543,915 to 1,546,206 _RS06900 PFLU_RS06905: PFLU_RS06905 - LemA family protein, at 1,546,449 to 1,547,060 _RS06905 PFLU_RS06910: PFLU_RS06910 - methanol dehydrogenase, at 1,547,079 to 1,547,807 _RS06910 PFLU_RS06915: PFLU_RS06915 - membrane protein, at 1,547,836 to 1,548,453 _RS06915 Position (kb) 1546 1547 1548Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1545.515 kb on + strand, within PFLU_RS06900at 1545.516 kb on - strand, within PFLU_RS06900at 1545.524 kb on + strand, within PFLU_RS06900at 1545.524 kb on + strand, within PFLU_RS06900at 1545.524 kb on + strand, within PFLU_RS06900at 1545.524 kb on + strand, within PFLU_RS06900at 1545.524 kb on + strand, within PFLU_RS06900at 1545.524 kb on + strand, within PFLU_RS06900at 1545.524 kb on + strand, within PFLU_RS06900at 1545.525 kb on - strand, within PFLU_RS06900at 1545.525 kb on - strand, within PFLU_RS06900at 1545.525 kb on - strand, within PFLU_RS06900at 1545.525 kb on - strand, within PFLU_RS06900at 1545.557 kb on + strand, within PFLU_RS06900at 1545.558 kb on - strand, within PFLU_RS06900at 1545.686 kb on + strand, within PFLU_RS06900at 1545.686 kb on + strand, within PFLU_RS06900at 1545.686 kb on + strand, within PFLU_RS06900at 1545.686 kb on + strand, within PFLU_RS06900at 1545.686 kb on + strand, within PFLU_RS06900at 1545.686 kb on + strand, within PFLU_RS06900at 1545.686 kb on + strand, within PFLU_RS06900at 1545.686 kb on + strand, within PFLU_RS06900at 1545.687 kb on - strand, within PFLU_RS06900at 1545.687 kb on - strand, within PFLU_RS06900at 1545.687 kb on - strand, within PFLU_RS06900at 1545.687 kb on - strand, within PFLU_RS06900at 1545.687 kb on - strand, within PFLU_RS06900at 1545.687 kb on - strand, within PFLU_RS06900at 1545.687 kb on - strand, within PFLU_RS06900at 1545.687 kb on - strand, within PFLU_RS06900at 1546.125 kb on + strandat 1546.210 kb on + strandat 1546.210 kb on + strandat 1546.274 kb on + strandat 1546.274 kb on + strandat 1546.274 kb on + strandat 1546.274 kb on + strandat 1546.274 kb on + strandat 1546.275 kb on - strandat 1546.275 kb on - strandat 1546.275 kb on - strandat 1546.275 kb on - strandat 1546.299 kb on + strandat 1546.300 kb on - strandat 1546.344 kb on + strandat 1546.344 kb on + strandat 1546.344 kb on + strandat 1546.344 kb on + strandat 1546.344 kb on + strandat 1546.345 kb on - strandat 1546.345 kb on - strandat 1546.345 kb on - strandat 1546.345 kb on - strandat 1546.381 kb on + strandat 1546.381 kb on + strandat 1546.382 kb on - strandat 1546.382 kb on - strandat 1546.401 kb on + strandat 1546.401 kb on + strandat 1546.401 kb on + strandat 1546.402 kb on - strandat 1546.402 kb on - strandat 1546.402 kb on - strandat 1546.402 kb on - strandat 1546.402 kb on - strandat 1546.403 kb on + strandat 1546.403 kb on + strandat 1546.404 kb on - strandat 1546.415 kb on + strandat 1546.415 kb on + strandat 1546.415 kb on + strandat 1546.415 kb on + strandat 1546.930 kb on - strand, within PFLU_RS06905at 1546.930 kb on - strand, within PFLU_RS06905at 1546.980 kb on + strand, within PFLU_RS06905at 1546.980 kb on + strand, within PFLU_RS06905at 1546.981 kb on - strand, within PFLU_RS06905at 1546.981 kb on - strand, within PFLU_RS06905at 1546.981 kb on - strand, within PFLU_RS06905at 1546.981 kb on - strand, within PFLU_RS06905at 1546.981 kb on - strand, within PFLU_RS06905at 1546.981 kb on - strand, within PFLU_RS06905at 1547.033 kb on + strandat 1547.034 kb on - strandat 1547.058 kb on + strandat 1547.058 kb on + strandat 1547.058 kb on + strandat 1547.058 kb on + strandat 1547.058 kb on + strandat 1547.059 kb on - strandat 1547.059 kb on - strandat 1547.059 kb on - strandat 1547.059 kb on - strandat 1547.059 kb on - strandat 1547.087 kb on - strandat 1547.096 kb on - strandat 1547.310 kb on + strand, within PFLU_RS06910at 1547.310 kb on + strand, within PFLU_RS06910at 1547.311 kb on - strand, within PFLU_RS06910at 1547.311 kb on - strand, within PFLU_RS06910at 1547.503 kb on - strand, within PFLU_RS06910at 1547.503 kb on - strand, within PFLU_RS06910at 1547.606 kb on + strand, within PFLU_RS06910at 1547.607 kb on - strand, within PFLU_RS06910at 1547.669 kb on + strand, within PFLU_RS06910at 1547.670 kb on - strand, within PFLU_RS06910at 1547.811 kb on + strandat 1547.811 kb on + strandat 1547.811 kb on + strandat 1547.811 kb on + strandat 1547.811 kb on + strandat 1547.812 kb on - strandat 1547.814 kb on + strandat 1547.814 kb on + strandat 1547.815 kb on - strandat 1547.815 kb on - strandat 1547.843 kb on + strandat 1547.843 kb on + strandat 1547.843 kb on + strandat 1547.844 kb on - strandat 1547.925 kb on - strand, within PFLU_RS06915at 1547.947 kb on + strand, within PFLU_RS06915at 1547.948 kb on - strand, within PFLU_RS06915at 1547.953 kb on + strand, within PFLU_RS06915at 1547.953 kb on + strand, within PFLU_RS06915at 1547.953 kb on + strand, within PFLU_RS06915at 1547.953 kb on + strand, within PFLU_RS06915at 1547.953 kb on + strand, within PFLU_RS06915at 1547.953 kb on + strand, within PFLU_RS06915at 1547.953 kb on + strand, within PFLU_RS06915at 1547.953 kb on + strand, within PFLU_RS06915at 1547.953 kb on + strand, within PFLU_RS06915at 1547.953 kb on + strand, within PFLU_RS06915at 1547.953 kb on + strand, within PFLU_RS06915at 1547.953 kb on + strand, within PFLU_RS06915at 1547.953 kb on + strand, within PFLU_RS06915at 1547.954 kb on - strand, within PFLU_RS06915at 1547.954 kb on - strand, within PFLU_RS06915at 1547.954 kb on - strand, within PFLU_RS06915at 1547.954 kb on - strand, within PFLU_RS06915at 1547.954 kb on - strand, within PFLU_RS06915at 1547.954 kb on - strand, within PFLU_RS06915at 1547.954 kb on - strand, within PFLU_RS06915at 1547.954 kb on - strand, within PFLU_RS06915at 1547.956 kb on - strand, within PFLU_RS06915at 1548.010 kb on + strand, within PFLU_RS06915at 1548.010 kb on + strand, within PFLU_RS06915at 1548.010 kb on + strand, within PFLU_RS06915at 1548.010 kb on + strand, within PFLU_RS06915at 1548.010 kb on + strand, within PFLU_RS06915at 1548.010 kb on + strand, within PFLU_RS06915at 1548.010 kb on + strand, within PFLU_RS06915at 1548.010 kb on + strand, within PFLU_RS06915at 1548.010 kb on + strand, within PFLU_RS06915at 1548.010 kb on + strand, within PFLU_RS06915at 1548.010 kb on + strand, within PFLU_RS06915at 1548.010 kb on + strand, within PFLU_RS06915at 1548.010 kb on + strand, within PFLU_RS06915at 1548.011 kb on - strand, within PFLU_RS06915at 1548.011 kb on - strand, within PFLU_RS06915at 1548.011 kb on - strand, within PFLU_RS06915at 1548.011 kb on - strand, within PFLU_RS06915at 1548.011 kb on - strand, within PFLU_RS06915at 1548.011 kb on - strand, within PFLU_RS06915at 1548.011 kb on - strand, within PFLU_RS06915at 1548.011 kb on - strand, within PFLU_RS06915at 1548.011 kb on - strand, within PFLU_RS06915at 1548.011 kb on - strand, within PFLU_RS06915at 1548.011 kb on - strand, within PFLU_RS06915at 1548.011 kb on - strand, within PFLU_RS06915at 1548.011 kb on - strand, within PFLU_RS06915at 1548.011 kb on - strand, within PFLU_RS06915at 1548.023 kb on - strand, within PFLU_RS06915at 1548.034 kb on + strand, within PFLU_RS06915at 1548.034 kb on + strand, within PFLU_RS06915at 1548.034 kb on + strand, within PFLU_RS06915at 1548.034 kb on + strand, within PFLU_RS06915at 1548.034 kb on + strand, within PFLU_RS06915at 1548.034 kb on + strand, within PFLU_RS06915at 1548.034 kb on + strand, within PFLU_RS06915at 1548.034 kb on + strand, within PFLU_RS06915at 1548.034 kb on + strand, within PFLU_RS06915at 1548.034 kb on + strand, within PFLU_RS06915at 1548.034 kb on + strand, within PFLU_RS06915at 1548.034 kb on + strand, within PFLU_RS06915at 1548.034 kb on + strand, within PFLU_RS06915at 1548.034 kb on + strand, within PFLU_RS06915at 1548.034 kb on + strand, within PFLU_RS06915at 1548.034 kb on + strand, within PFLU_RS06915at 1548.035 kb on - strand, within PFLU_RS06915at 1548.035 kb on - strand, within PFLU_RS06915at 1548.035 kb on - strand, within PFLU_RS06915at 1548.035 kb on - strand, within PFLU_RS06915at 1548.035 kb on - strand, within PFLU_RS06915at 1548.035 kb on - strand, within PFLU_RS06915at 1548.035 kb on - strand, within PFLU_RS06915at 1548.035 kb on - strand, within PFLU_RS06915at 1548.035 kb on - strand, within PFLU_RS06915at 1548.035 kb on - strand, within PFLU_RS06915at 1548.035 kb on - strand, within PFLU_RS06915at 1548.035 kb on - strand, within PFLU_RS06915at 1548.035 kb on - strand, within PFLU_RS06915at 1548.035 kb on - strand, within PFLU_RS06915at 1548.035 kb on - strand, within PFLU_RS06915at 1548.035 kb on - strand, within PFLU_RS06915at 1548.035 kb on - strand, within PFLU_RS06915at 1548.035 kb on - strand, within PFLU_RS06915at 1548.035 kb on - strand, within PFLU_RS06915at 1548.035 kb on - strand, within PFLU_RS06915

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C); with MOPS
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1,545,515 + PFLU_RS06900 0.70 -0.0
1,545,516 - PFLU_RS06900 0.70 -1.3
1,545,524 + PFLU_RS06900 0.70 -1.7
1,545,524 + PFLU_RS06900 0.70 -0.9
1,545,524 + PFLU_RS06900 0.70 +0.3
1,545,524 + PFLU_RS06900 0.70 -2.5
1,545,524 + PFLU_RS06900 0.70 -1.5
1,545,524 + PFLU_RS06900 0.70 -0.3
1,545,524 + PFLU_RS06900 0.70 -0.6
1,545,525 - PFLU_RS06900 0.70 -1.0
1,545,525 - PFLU_RS06900 0.70 -1.6
1,545,525 - PFLU_RS06900 0.70 -1.2
1,545,525 - PFLU_RS06900 0.70 -2.3
1,545,557 + PFLU_RS06900 0.72 -0.2
1,545,558 - PFLU_RS06900 0.72 +1.5
1,545,686 + PFLU_RS06900 0.77 +0.7
1,545,686 + PFLU_RS06900 0.77 -0.6
1,545,686 + PFLU_RS06900 0.77 -0.6
1,545,686 + PFLU_RS06900 0.77 -0.9
1,545,686 + PFLU_RS06900 0.77 -0.8
1,545,686 + PFLU_RS06900 0.77 -0.3
1,545,686 + PFLU_RS06900 0.77 -1.8
1,545,686 + PFLU_RS06900 0.77 -0.8
1,545,687 - PFLU_RS06900 0.77 -0.5
1,545,687 - PFLU_RS06900 0.77 +0.6
1,545,687 - PFLU_RS06900 0.77 -1.5
1,545,687 - PFLU_RS06900 0.77 -1.7
1,545,687 - PFLU_RS06900 0.77 -0.4
1,545,687 - PFLU_RS06900 0.77 -1.5
1,545,687 - PFLU_RS06900 0.77 -0.6
1,545,687 - PFLU_RS06900 0.77 -1.8
1,546,125 + -0.9
1,546,210 + -1.0
1,546,210 + +0.4
1,546,274 + +0.4
1,546,274 + -0.4
1,546,274 + -1.2
1,546,274 + -0.5
1,546,274 + -0.0
1,546,275 - +1.1
1,546,275 - +0.2
1,546,275 - -0.6
1,546,275 - +0.2
1,546,299 + -2.0
1,546,300 - -2.4
1,546,344 + -1.2
1,546,344 + -2.2
1,546,344 + -0.2
1,546,344 + -0.5
1,546,344 + -0.5
1,546,345 - +1.3
1,546,345 - +0.6
1,546,345 - -0.2
1,546,345 - -0.1
1,546,381 + -0.0
1,546,381 + +0.8
1,546,382 - +0.1
1,546,382 - -0.1
1,546,401 + +0.0
1,546,401 + -0.2
1,546,401 + -1.2
1,546,402 - -1.5
1,546,402 - -0.5
1,546,402 - -2.5
1,546,402 - -1.3
1,546,402 - -0.4
1,546,403 + +0.2
1,546,403 + +0.7
1,546,404 - -0.9
1,546,415 + +1.2
1,546,415 + +0.9
1,546,415 + -0.8
1,546,415 + +1.3
1,546,930 - PFLU_RS06905 0.79 +0.9
1,546,930 - PFLU_RS06905 0.79 +0.5
1,546,980 + PFLU_RS06905 0.87 +0.4
1,546,980 + PFLU_RS06905 0.87 -1.8
1,546,981 - PFLU_RS06905 0.87 +3.4
1,546,981 - PFLU_RS06905 0.87 -1.3
1,546,981 - PFLU_RS06905 0.87 -0.2
1,546,981 - PFLU_RS06905 0.87 -0.5
1,546,981 - PFLU_RS06905 0.87 +0.3
1,546,981 - PFLU_RS06905 0.87 -1.0
1,547,033 + -0.7
1,547,034 - -0.3
1,547,058 + +0.5
1,547,058 + -0.6
1,547,058 + -2.1
1,547,058 + -1.2
1,547,058 + +0.6
1,547,059 - -0.5
1,547,059 - +1.2
1,547,059 - -0.4
1,547,059 - -0.3
1,547,059 - +0.2
1,547,087 - +1.4
1,547,096 - +0.7
1,547,310 + PFLU_RS06910 0.32 +0.5
1,547,310 + PFLU_RS06910 0.32 +0.8
1,547,311 - PFLU_RS06910 0.32 +1.0
1,547,311 - PFLU_RS06910 0.32 +0.2
1,547,503 - PFLU_RS06910 0.58 -0.7
1,547,503 - PFLU_RS06910 0.58 +0.1
1,547,606 + PFLU_RS06910 0.72 -0.6
1,547,607 - PFLU_RS06910 0.72 -1.5
1,547,669 + PFLU_RS06910 0.81 -2.2
1,547,670 - PFLU_RS06910 0.81 -0.1
1,547,811 + +0.8
1,547,811 + +0.1
1,547,811 + +1.1
1,547,811 + +1.3
1,547,811 + +0.5
1,547,812 - -0.7
1,547,814 + -0.5
1,547,814 + -0.3
1,547,815 - +1.0
1,547,815 - -0.5
1,547,843 + +1.1
1,547,843 + -0.0
1,547,843 + +0.5
1,547,844 - -0.3
1,547,925 - PFLU_RS06915 0.14 -1.5
1,547,947 + PFLU_RS06915 0.18 -0.2
1,547,948 - PFLU_RS06915 0.18 -0.5
1,547,953 + PFLU_RS06915 0.19 -2.0
1,547,953 + PFLU_RS06915 0.19 +0.8
1,547,953 + PFLU_RS06915 0.19 +0.4
1,547,953 + PFLU_RS06915 0.19 -1.2
1,547,953 + PFLU_RS06915 0.19 +0.0
1,547,953 + PFLU_RS06915 0.19 +1.3
1,547,953 + PFLU_RS06915 0.19 +1.3
1,547,953 + PFLU_RS06915 0.19 -0.2
1,547,953 + PFLU_RS06915 0.19 -0.3
1,547,953 + PFLU_RS06915 0.19 +0.7
1,547,953 + PFLU_RS06915 0.19 -1.9
1,547,953 + PFLU_RS06915 0.19 -0.1
1,547,953 + PFLU_RS06915 0.19 -0.5
1,547,954 - PFLU_RS06915 0.19 -0.3
1,547,954 - PFLU_RS06915 0.19 +0.7
1,547,954 - PFLU_RS06915 0.19 -1.0
1,547,954 - PFLU_RS06915 0.19 +0.5
1,547,954 - PFLU_RS06915 0.19 +0.1
1,547,954 - PFLU_RS06915 0.19 +0.5
1,547,954 - PFLU_RS06915 0.19 -0.7
1,547,954 - PFLU_RS06915 0.19 +1.7
1,547,956 - PFLU_RS06915 0.19 -0.9
1,548,010 + PFLU_RS06915 0.28 +0.5
1,548,010 + PFLU_RS06915 0.28 -0.4
1,548,010 + PFLU_RS06915 0.28 -0.2
1,548,010 + PFLU_RS06915 0.28 +1.6
1,548,010 + PFLU_RS06915 0.28 -0.0
1,548,010 + PFLU_RS06915 0.28 +2.0
1,548,010 + PFLU_RS06915 0.28 -0.5
1,548,010 + PFLU_RS06915 0.28 -1.0
1,548,010 + PFLU_RS06915 0.28 +0.4
1,548,010 + PFLU_RS06915 0.28 -0.3
1,548,010 + PFLU_RS06915 0.28 -0.5
1,548,010 + PFLU_RS06915 0.28 +0.3
1,548,010 + PFLU_RS06915 0.28 +0.1
1,548,011 - PFLU_RS06915 0.28 -0.2
1,548,011 - PFLU_RS06915 0.28 +0.7
1,548,011 - PFLU_RS06915 0.28 -0.6
1,548,011 - PFLU_RS06915 0.28 -1.5
1,548,011 - PFLU_RS06915 0.28 +1.2
1,548,011 - PFLU_RS06915 0.28 -0.1
1,548,011 - PFLU_RS06915 0.28 -1.0
1,548,011 - PFLU_RS06915 0.28 -2.4
1,548,011 - PFLU_RS06915 0.28 +1.1
1,548,011 - PFLU_RS06915 0.28 +0.6
1,548,011 - PFLU_RS06915 0.28 -0.5
1,548,011 - PFLU_RS06915 0.28 +1.1
1,548,011 - PFLU_RS06915 0.28 -0.0
1,548,011 - PFLU_RS06915 0.28 -0.6
1,548,023 - PFLU_RS06915 0.30 -0.9
1,548,034 + PFLU_RS06915 0.32 -1.1
1,548,034 + PFLU_RS06915 0.32 +0.7
1,548,034 + PFLU_RS06915 0.32 -2.0
1,548,034 + PFLU_RS06915 0.32 -0.3
1,548,034 + PFLU_RS06915 0.32 -0.6
1,548,034 + PFLU_RS06915 0.32 -1.4
1,548,034 + PFLU_RS06915 0.32 +1.5
1,548,034 + PFLU_RS06915 0.32 -0.5
1,548,034 + PFLU_RS06915 0.32 -1.2
1,548,034 + PFLU_RS06915 0.32 -0.4
1,548,034 + PFLU_RS06915 0.32 -1.3
1,548,034 + PFLU_RS06915 0.32 +1.5
1,548,034 + PFLU_RS06915 0.32 +0.9
1,548,034 + PFLU_RS06915 0.32 -0.5
1,548,034 + PFLU_RS06915 0.32 -0.5
1,548,034 + PFLU_RS06915 0.32 +0.2
1,548,035 - PFLU_RS06915 0.32 -1.3
1,548,035 - PFLU_RS06915 0.32 -1.0
1,548,035 - PFLU_RS06915 0.32 -0.5
1,548,035 - PFLU_RS06915 0.32 -1.2
1,548,035 - PFLU_RS06915 0.32 -0.7
1,548,035 - PFLU_RS06915 0.32 +0.0
1,548,035 - PFLU_RS06915 0.32 +0.5
1,548,035 - PFLU_RS06915 0.32 +1.0
1,548,035 - PFLU_RS06915 0.32 +3.9
1,548,035 - PFLU_RS06915 0.32 -0.3
1,548,035 - PFLU_RS06915 0.32 +0.5
1,548,035 - PFLU_RS06915 0.32 -0.8
1,548,035 - PFLU_RS06915 0.32 -0.9
1,548,035 - PFLU_RS06915 0.32 +1.7
1,548,035 - PFLU_RS06915 0.32 -0.5
1,548,035 - PFLU_RS06915 0.32 +1.2
1,548,035 - PFLU_RS06915 0.32 -1.8
1,548,035 - PFLU_RS06915 0.32 +0.2
1,548,035 - PFLU_RS06915 0.32 -0.4
1,548,035 - PFLU_RS06915 0.32 -1.9

Or see this region's nucleotide sequence