Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS03385

Experiment: L-Arabinose (C); with MOPS

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPFLU_RS03375 and PFLU_RS03380 overlap by 4 nucleotidesPFLU_RS03380 and PFLU_RS03385 overlap by 11 nucleotidesPFLU_RS03385 and PFLU_RS03390 are separated by 187 nucleotidesPFLU_RS03390 and PFLU_RS03395 overlap by 8 nucleotides PFLU_RS03375: PFLU_RS03375 - chromosome segregation ATPase, at 777,645 to 780,485 _RS03375 PFLU_RS03380: PFLU_RS03380 - chromosome partitioning protein, at 780,482 to 781,189 _RS03380 PFLU_RS03385: PFLU_RS03385 - hypothetical protein, at 781,179 to 782,456 _RS03385 PFLU_RS03390: PFLU_RS03390 - hypothetical protein, at 782,644 to 783,390 _RS03390 PFLU_RS03395: PFLU_RS03395 - ribosomal-protein-alanine N-acetyltransferase, at 783,383 to 783,835 _RS03395 Position (kb) 781 782 783Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 780.250 kb on + strandat 780.250 kb on + strandat 780.250 kb on + strandat 780.250 kb on + strandat 780.250 kb on + strandat 780.250 kb on + strandat 780.250 kb on + strandat 780.250 kb on + strandat 780.251 kb on - strandat 780.251 kb on - strandat 780.251 kb on - strandat 780.251 kb on - strandat 780.251 kb on - strandat 780.251 kb on - strandat 780.251 kb on - strandat 780.251 kb on - strandat 780.271 kb on + strandat 780.271 kb on + strandat 780.272 kb on - strandat 780.272 kb on - strandat 780.298 kb on + strandat 780.298 kb on + strandat 780.298 kb on + strandat 780.298 kb on + strandat 780.298 kb on + strandat 780.299 kb on - strandat 780.299 kb on - strandat 780.369 kb on - strandat 780.388 kb on + strandat 780.388 kb on + strandat 780.388 kb on + strandat 780.388 kb on + strandat 780.447 kb on + strandat 780.723 kb on + strand, within PFLU_RS03380at 780.723 kb on + strand, within PFLU_RS03380at 780.723 kb on + strand, within PFLU_RS03380at 780.723 kb on + strand, within PFLU_RS03380at 780.831 kb on + strand, within PFLU_RS03380at 781.005 kb on + strand, within PFLU_RS03380at 781.005 kb on + strand, within PFLU_RS03380at 781.005 kb on + strand, within PFLU_RS03380at 781.006 kb on - strand, within PFLU_RS03380at 781.006 kb on - strand, within PFLU_RS03380at 781.006 kb on - strand, within PFLU_RS03380at 781.006 kb on - strand, within PFLU_RS03380at 781.008 kb on + strand, within PFLU_RS03380at 781.008 kb on + strand, within PFLU_RS03380at 781.008 kb on + strand, within PFLU_RS03380at 781.095 kb on + strand, within PFLU_RS03380at 781.095 kb on + strand, within PFLU_RS03380at 781.096 kb on - strand, within PFLU_RS03380at 781.126 kb on - strandat 781.189 kb on + strandat 781.189 kb on + strandat 781.189 kb on + strandat 781.190 kb on - strandat 781.342 kb on + strand, within PFLU_RS03385at 781.343 kb on - strand, within PFLU_RS03385at 781.343 kb on - strand, within PFLU_RS03385at 781.534 kb on + strand, within PFLU_RS03385at 781.534 kb on + strand, within PFLU_RS03385at 781.534 kb on + strand, within PFLU_RS03385at 781.534 kb on + strand, within PFLU_RS03385at 781.534 kb on + strand, within PFLU_RS03385at 781.534 kb on + strand, within PFLU_RS03385at 781.534 kb on + strand, within PFLU_RS03385at 781.534 kb on + strand, within PFLU_RS03385at 781.534 kb on + strand, within PFLU_RS03385at 781.535 kb on - strand, within PFLU_RS03385at 781.535 kb on - strand, within PFLU_RS03385at 781.535 kb on - strand, within PFLU_RS03385at 781.535 kb on - strand, within PFLU_RS03385at 781.535 kb on - strand, within PFLU_RS03385at 781.535 kb on - strand, within PFLU_RS03385at 781.535 kb on - strand, within PFLU_RS03385at 781.540 kb on + strand, within PFLU_RS03385at 781.540 kb on + strand, within PFLU_RS03385at 781.540 kb on + strand, within PFLU_RS03385at 781.540 kb on + strand, within PFLU_RS03385at 781.540 kb on + strand, within PFLU_RS03385at 781.540 kb on + strand, within PFLU_RS03385at 781.540 kb on + strand, within PFLU_RS03385at 781.540 kb on + strand, within PFLU_RS03385at 781.540 kb on + strand, within PFLU_RS03385at 781.540 kb on + strand, within PFLU_RS03385at 781.540 kb on + strand, within PFLU_RS03385at 781.540 kb on + strand, within PFLU_RS03385at 781.541 kb on - strand, within PFLU_RS03385at 781.541 kb on - strand, within PFLU_RS03385at 781.541 kb on - strand, within PFLU_RS03385at 781.541 kb on - strand, within PFLU_RS03385at 781.541 kb on - strand, within PFLU_RS03385at 781.541 kb on - strand, within PFLU_RS03385at 781.541 kb on - strand, within PFLU_RS03385at 781.631 kb on + strand, within PFLU_RS03385at 781.631 kb on + strand, within PFLU_RS03385at 781.631 kb on + strand, within PFLU_RS03385at 781.632 kb on - strand, within PFLU_RS03385at 781.632 kb on - strand, within PFLU_RS03385at 781.632 kb on - strand, within PFLU_RS03385at 781.679 kb on + strand, within PFLU_RS03385at 781.679 kb on + strand, within PFLU_RS03385at 781.679 kb on + strand, within PFLU_RS03385at 781.679 kb on + strand, within PFLU_RS03385at 781.680 kb on - strand, within PFLU_RS03385at 781.680 kb on - strand, within PFLU_RS03385at 781.680 kb on - strand, within PFLU_RS03385at 781.918 kb on + strand, within PFLU_RS03385at 781.918 kb on + strand, within PFLU_RS03385at 781.918 kb on + strand, within PFLU_RS03385at 781.918 kb on + strand, within PFLU_RS03385at 781.919 kb on - strand, within PFLU_RS03385at 781.919 kb on - strand, within PFLU_RS03385at 781.919 kb on - strand, within PFLU_RS03385at 781.919 kb on - strand, within PFLU_RS03385at 781.919 kb on - strand, within PFLU_RS03385at 781.919 kb on - strand, within PFLU_RS03385at 781.919 kb on - strand, within PFLU_RS03385at 782.120 kb on + strand, within PFLU_RS03385at 782.120 kb on + strand, within PFLU_RS03385at 782.121 kb on - strand, within PFLU_RS03385at 782.122 kb on + strand, within PFLU_RS03385at 782.122 kb on + strand, within PFLU_RS03385at 782.122 kb on + strand, within PFLU_RS03385at 782.152 kb on + strand, within PFLU_RS03385at 782.152 kb on + strand, within PFLU_RS03385at 782.152 kb on + strand, within PFLU_RS03385at 782.153 kb on - strand, within PFLU_RS03385at 782.153 kb on - strand, within PFLU_RS03385at 782.200 kb on + strand, within PFLU_RS03385at 782.481 kb on + strandat 782.482 kb on - strandat 782.496 kb on + strandat 782.496 kb on + strandat 782.496 kb on + strandat 782.496 kb on + strandat 782.496 kb on + strandat 782.497 kb on - strandat 782.497 kb on - strandat 782.517 kb on + strandat 782.581 kb on + strandat 782.581 kb on + strandat 782.581 kb on + strandat 782.581 kb on + strandat 782.581 kb on + strandat 782.581 kb on + strandat 782.586 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C); with MOPS
remove
780,250 + -1.4
780,250 + -0.4
780,250 + +0.7
780,250 + -0.3
780,250 + +0.6
780,250 + +0.3
780,250 + -0.6
780,250 + +0.9
780,251 - -1.4
780,251 - -0.0
780,251 - -0.6
780,251 - -2.1
780,251 - -0.1
780,251 - -0.4
780,251 - -0.0
780,251 - +0.4
780,271 + +0.1
780,271 + -0.2
780,272 - -0.4
780,272 - +1.2
780,298 + -1.2
780,298 + +0.5
780,298 + +0.3
780,298 + -0.7
780,298 + -0.9
780,299 - -0.3
780,299 - +0.1
780,369 - -0.6
780,388 + -1.2
780,388 + -1.1
780,388 + +0.2
780,388 + -0.7
780,447 + +0.2
780,723 + PFLU_RS03380 0.34 +0.3
780,723 + PFLU_RS03380 0.34 +1.4
780,723 + PFLU_RS03380 0.34 +1.1
780,723 + PFLU_RS03380 0.34 -1.5
780,831 + PFLU_RS03380 0.49 +0.5
781,005 + PFLU_RS03380 0.74 +0.2
781,005 + PFLU_RS03380 0.74 -1.0
781,005 + PFLU_RS03380 0.74 +1.0
781,006 - PFLU_RS03380 0.74 -1.2
781,006 - PFLU_RS03380 0.74 -0.9
781,006 - PFLU_RS03380 0.74 -0.3
781,006 - PFLU_RS03380 0.74 +0.8
781,008 + PFLU_RS03380 0.74 -2.7
781,008 + PFLU_RS03380 0.74 -0.0
781,008 + PFLU_RS03380 0.74 +0.3
781,095 + PFLU_RS03380 0.87 -1.1
781,095 + PFLU_RS03380 0.87 +1.5
781,096 - PFLU_RS03380 0.87 -0.3
781,126 - -1.0
781,189 + +0.1
781,189 + +0.2
781,189 + +0.2
781,190 - +0.2
781,342 + PFLU_RS03385 0.13 +1.3
781,343 - PFLU_RS03385 0.13 +1.0
781,343 - PFLU_RS03385 0.13 -0.3
781,534 + PFLU_RS03385 0.28 -0.0
781,534 + PFLU_RS03385 0.28 -1.6
781,534 + PFLU_RS03385 0.28 -1.4
781,534 + PFLU_RS03385 0.28 +0.9
781,534 + PFLU_RS03385 0.28 -0.0
781,534 + PFLU_RS03385 0.28 -1.0
781,534 + PFLU_RS03385 0.28 +0.5
781,534 + PFLU_RS03385 0.28 -1.2
781,534 + PFLU_RS03385 0.28 +0.4
781,535 - PFLU_RS03385 0.28 +0.8
781,535 - PFLU_RS03385 0.28 -0.2
781,535 - PFLU_RS03385 0.28 -0.1
781,535 - PFLU_RS03385 0.28 -0.1
781,535 - PFLU_RS03385 0.28 -1.5
781,535 - PFLU_RS03385 0.28 +0.3
781,535 - PFLU_RS03385 0.28 +0.9
781,540 + PFLU_RS03385 0.28 -0.0
781,540 + PFLU_RS03385 0.28 -2.4
781,540 + PFLU_RS03385 0.28 -1.3
781,540 + PFLU_RS03385 0.28 -0.4
781,540 + PFLU_RS03385 0.28 -0.7
781,540 + PFLU_RS03385 0.28 -1.8
781,540 + PFLU_RS03385 0.28 +0.3
781,540 + PFLU_RS03385 0.28 -1.4
781,540 + PFLU_RS03385 0.28 -1.2
781,540 + PFLU_RS03385 0.28 -2.0
781,540 + PFLU_RS03385 0.28 -0.1
781,540 + PFLU_RS03385 0.28 +1.4
781,541 - PFLU_RS03385 0.28 +1.1
781,541 - PFLU_RS03385 0.28 -1.7
781,541 - PFLU_RS03385 0.28 -0.7
781,541 - PFLU_RS03385 0.28 +0.4
781,541 - PFLU_RS03385 0.28 -0.5
781,541 - PFLU_RS03385 0.28 +0.1
781,541 - PFLU_RS03385 0.28 +1.8
781,631 + PFLU_RS03385 0.35 +0.1
781,631 + PFLU_RS03385 0.35 +0.8
781,631 + PFLU_RS03385 0.35 -1.2
781,632 - PFLU_RS03385 0.35 +0.9
781,632 - PFLU_RS03385 0.35 +0.9
781,632 - PFLU_RS03385 0.35 -2.6
781,679 + PFLU_RS03385 0.39 +1.9
781,679 + PFLU_RS03385 0.39 -0.7
781,679 + PFLU_RS03385 0.39 -3.1
781,679 + PFLU_RS03385 0.39 +0.3
781,680 - PFLU_RS03385 0.39 -0.0
781,680 - PFLU_RS03385 0.39 -1.3
781,680 - PFLU_RS03385 0.39 -1.9
781,918 + PFLU_RS03385 0.58 +0.0
781,918 + PFLU_RS03385 0.58 -0.0
781,918 + PFLU_RS03385 0.58 +0.6
781,918 + PFLU_RS03385 0.58 -1.1
781,919 - PFLU_RS03385 0.58 +0.3
781,919 - PFLU_RS03385 0.58 -0.1
781,919 - PFLU_RS03385 0.58 -0.9
781,919 - PFLU_RS03385 0.58 -0.1
781,919 - PFLU_RS03385 0.58 +0.3
781,919 - PFLU_RS03385 0.58 -0.6
781,919 - PFLU_RS03385 0.58 -0.2
782,120 + PFLU_RS03385 0.74 -0.5
782,120 + PFLU_RS03385 0.74 -0.5
782,121 - PFLU_RS03385 0.74 +0.1
782,122 + PFLU_RS03385 0.74 -1.8
782,122 + PFLU_RS03385 0.74 +0.4
782,122 + PFLU_RS03385 0.74 -0.7
782,152 + PFLU_RS03385 0.76 -0.6
782,152 + PFLU_RS03385 0.76 +1.2
782,152 + PFLU_RS03385 0.76 -0.3
782,153 - PFLU_RS03385 0.76 -0.1
782,153 - PFLU_RS03385 0.76 -2.1
782,200 + PFLU_RS03385 0.80 -0.7
782,481 + -1.5
782,482 - -0.3
782,496 + -1.8
782,496 + -1.4
782,496 + +0.1
782,496 + +0.4
782,496 + -1.1
782,497 - +0.4
782,497 - +2.5
782,517 + +0.2
782,581 + -2.0
782,581 + -1.7
782,581 + +2.2
782,581 + +0.6
782,581 + -0.2
782,581 + +0.3
782,586 - +0.0

Or see this region's nucleotide sequence