Strain Fitness in Pseudomonas sp. S08-1 around OH686_21565

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_21550 and OH686_21555 overlap by 11 nucleotidesOH686_21555 and OH686_21560 overlap by 4 nucleotidesOH686_21560 and OH686_21565 overlap by 8 nucleotidesOH686_21565 and OH686_21570 overlap by 1 nucleotidesOH686_21570 and OH686_21575 are separated by 78 nucleotides OH686_21550: OH686_21550 - Origin specific replication binding factor, at 4,395,472 to 4,396,215 _21550 OH686_21555: OH686_21555 - CDS, at 4,396,205 to 4,396,366 _21555 OH686_21560: OH686_21560 - hypothetical protein, at 4,396,363 to 4,396,713 _21560 OH686_21565: OH686_21565 - Phage protein, at 4,396,706 to 4,397,263 _21565 OH686_21570: OH686_21570 - Phage recombination protein NinG, at 4,397,263 to 4,397,868 _21570 OH686_21575: OH686_21575 - hypothetical protein, at 4,397,947 to 4,398,420 _21575 Position (kb) 4396 4397 4398Strain fitness (log2 ratio) -2 -1 0 1at 4395.923 kb on - strand, within OH686_21550at 4395.923 kb on - strand, within OH686_21550at 4395.923 kb on - strand, within OH686_21550at 4396.529 kb on - strand, within OH686_21560at 4396.529 kb on - strand, within OH686_21560at 4396.529 kb on - strand, within OH686_21560at 4396.529 kb on - strand, within OH686_21560at 4396.705 kb on - strandat 4396.787 kb on + strand, within OH686_21565at 4396.787 kb on + strand, within OH686_21565at 4396.787 kb on + strand, within OH686_21565at 4396.787 kb on + strand, within OH686_21565at 4396.788 kb on - strand, within OH686_21565at 4396.788 kb on - strand, within OH686_21565at 4396.788 kb on - strand, within OH686_21565at 4396.788 kb on - strand, within OH686_21565at 4396.831 kb on - strand, within OH686_21565at 4396.831 kb on - strand, within OH686_21565at 4396.831 kb on - strand, within OH686_21565at 4396.831 kb on - strand, within OH686_21565at 4396.831 kb on - strand, within OH686_21565at 4396.831 kb on - strand, within OH686_21565at 4396.831 kb on - strand, within OH686_21565at 4396.876 kb on + strand, within OH686_21565at 4396.876 kb on + strand, within OH686_21565at 4396.877 kb on - strand, within OH686_21565at 4396.939 kb on + strand, within OH686_21565at 4396.940 kb on - strand, within OH686_21565at 4397.196 kb on - strand, within OH686_21565at 4397.196 kb on - strand, within OH686_21565at 4397.196 kb on - strand, within OH686_21565at 4397.196 kb on - strand, within OH686_21565at 4397.196 kb on - strand, within OH686_21565at 4397.196 kb on - strand, within OH686_21565at 4397.196 kb on - strand, within OH686_21565at 4397.591 kb on - strand, within OH686_21570at 4397.591 kb on - strand, within OH686_21570at 4397.591 kb on - strand, within OH686_21570at 4397.859 kb on - strandat 4397.859 kb on - strandat 4397.979 kb on - strandat 4397.979 kb on - strandat 4397.979 kb on - strandat 4398.128 kb on - strand, within OH686_21575at 4398.164 kb on + strand, within OH686_21575at 4398.165 kb on - strand, within OH686_21575at 4398.181 kb on - strand, within OH686_21575at 4398.181 kb on - strand, within OH686_21575at 4398.206 kb on + strand, within OH686_21575at 4398.206 kb on + strand, within OH686_21575at 4398.207 kb on - strand, within OH686_21575at 4398.207 kb on - strand, within OH686_21575at 4398.207 kb on - strand, within OH686_21575at 4398.231 kb on + strand, within OH686_21575at 4398.231 kb on + strand, within OH686_21575

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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4,395,923 - OH686_21550 0.61 -0.4
4,395,923 - OH686_21550 0.61 -0.3
4,395,923 - OH686_21550 0.61 +0.6
4,396,529 - OH686_21560 0.47 +0.5
4,396,529 - OH686_21560 0.47 -0.9
4,396,529 - OH686_21560 0.47 -1.4
4,396,529 - OH686_21560 0.47 +0.4
4,396,705 - +0.5
4,396,787 + OH686_21565 0.15 -0.1
4,396,787 + OH686_21565 0.15 +0.1
4,396,787 + OH686_21565 0.15 +0.1
4,396,787 + OH686_21565 0.15 -0.2
4,396,788 - OH686_21565 0.15 +0.0
4,396,788 - OH686_21565 0.15 +1.2
4,396,788 - OH686_21565 0.15 -0.0
4,396,788 - OH686_21565 0.15 +0.1
4,396,831 - OH686_21565 0.22 +0.7
4,396,831 - OH686_21565 0.22 +0.7
4,396,831 - OH686_21565 0.22 +0.1
4,396,831 - OH686_21565 0.22 -0.4
4,396,831 - OH686_21565 0.22 -1.4
4,396,831 - OH686_21565 0.22 +0.8
4,396,831 - OH686_21565 0.22 +0.1
4,396,876 + OH686_21565 0.30 -0.5
4,396,876 + OH686_21565 0.30 +0.4
4,396,877 - OH686_21565 0.31 -1.4
4,396,939 + OH686_21565 0.42 -0.5
4,396,940 - OH686_21565 0.42 -1.4
4,397,196 - OH686_21565 0.88 +0.5
4,397,196 - OH686_21565 0.88 -0.1
4,397,196 - OH686_21565 0.88 -0.1
4,397,196 - OH686_21565 0.88 -1.1
4,397,196 - OH686_21565 0.88 -0.4
4,397,196 - OH686_21565 0.88 +0.1
4,397,196 - OH686_21565 0.88 -0.1
4,397,591 - OH686_21570 0.54 -0.6
4,397,591 - OH686_21570 0.54 -2.0
4,397,591 - OH686_21570 0.54 -0.4
4,397,859 - -0.1
4,397,859 - +0.7
4,397,979 - -0.2
4,397,979 - +0.7
4,397,979 - -0.5
4,398,128 - OH686_21575 0.38 -1.4
4,398,164 + OH686_21575 0.46 -1.5
4,398,165 - OH686_21575 0.46 -0.3
4,398,181 - OH686_21575 0.49 -1.7
4,398,181 - OH686_21575 0.49 -0.9
4,398,206 + OH686_21575 0.55 +1.4
4,398,206 + OH686_21575 0.55 -0.1
4,398,207 - OH686_21575 0.55 +0.1
4,398,207 - OH686_21575 0.55 -0.2
4,398,207 - OH686_21575 0.55 -0.3
4,398,231 + OH686_21575 0.60 -0.4
4,398,231 + OH686_21575 0.60 -0.2

Or see this region's nucleotide sequence