Strain Fitness in Pseudomonas sp. S08-1 around OH686_20865

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_20860 and OH686_20865 are separated by 7 nucleotidesOH686_20865 and OH686_20870 overlap by 1 nucleotides OH686_20860: OH686_20860 - DNA gyrase, A subunit, at 4,262,642 to 4,265,416 _20860 OH686_20865: OH686_20865 - phosphoserine transaminase, at 4,265,424 to 4,266,509 _20865 OH686_20870: OH686_20870 - Chorismate mutase I / Prephenate dehydratase , at 4,266,509 to 4,267,606 _20870 Position (kb) 4265 4266 4267Strain fitness (log2 ratio) -3 -2 -1 0 1at 4266.803 kb on + strand, within OH686_20870at 4267.091 kb on + strand, within OH686_20870at 4267.091 kb on + strand, within OH686_20870at 4267.092 kb on - strand, within OH686_20870at 4267.198 kb on + strand, within OH686_20870at 4267.481 kb on + strand, within OH686_20870at 4267.481 kb on + strand, within OH686_20870at 4267.481 kb on + strand, within OH686_20870at 4267.481 kb on + strand, within OH686_20870at 4267.481 kb on + strand, within OH686_20870at 4267.481 kb on + strand, within OH686_20870at 4267.481 kb on + strand, within OH686_20870at 4267.481 kb on + strand, within OH686_20870at 4267.481 kb on + strand, within OH686_20870at 4267.481 kb on + strand, within OH686_20870at 4267.482 kb on - strand, within OH686_20870at 4267.482 kb on - strand, within OH686_20870at 4267.482 kb on - strand, within OH686_20870at 4267.482 kb on - strand, within OH686_20870at 4267.482 kb on - strand, within OH686_20870

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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4,266,803 + OH686_20870 0.27 -3.2
4,267,091 + OH686_20870 0.53 -0.7
4,267,091 + OH686_20870 0.53 -2.2
4,267,092 - OH686_20870 0.53 -0.4
4,267,198 + OH686_20870 0.63 -0.1
4,267,481 + OH686_20870 0.89 -0.4
4,267,481 + OH686_20870 0.89 -0.1
4,267,481 + OH686_20870 0.89 -2.0
4,267,481 + OH686_20870 0.89 -1.9
4,267,481 + OH686_20870 0.89 -3.6
4,267,481 + OH686_20870 0.89 -2.4
4,267,481 + OH686_20870 0.89 -1.4
4,267,481 + OH686_20870 0.89 -2.6
4,267,481 + OH686_20870 0.89 -1.5
4,267,481 + OH686_20870 0.89 -1.1
4,267,482 - OH686_20870 0.89 -0.7
4,267,482 - OH686_20870 0.89 -0.4
4,267,482 - OH686_20870 0.89 -1.7
4,267,482 - OH686_20870 0.89 -0.4
4,267,482 - OH686_20870 0.89 -0.4

Or see this region's nucleotide sequence