Strain Fitness in Pseudomonas sp. S08-1 around OH686_20765

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_20755 and OH686_20760 are separated by 30 nucleotidesOH686_20760 and OH686_20765 are separated by 7 nucleotidesOH686_20765 and OH686_20770 are separated by 56 nucleotidesOH686_20770 and OH686_20775 are separated by 105 nucleotides OH686_20755: OH686_20755 - Ferredoxin, at 4,246,750 to 4,247,097 _20755 OH686_20760: OH686_20760 - Putative NAD(P)H nitroreductase YdjA, at 4,247,128 to 4,247,685 _20760 OH686_20765: OH686_20765 - Two-component system sensor histidine kinase, at 4,247,693 to 4,249,015 _20765 OH686_20770: OH686_20770 - hypothetical protein, at 4,249,072 to 4,249,509 _20770 OH686_20775: OH686_20775 - Two-component transcriptional response regulator, LuxR family, at 4,249,615 to 4,250,292 _20775 Position (kb) 4247 4248 4249 4250Strain fitness (log2 ratio) -2 -1 0 1at 4246.699 kb on + strandat 4246.699 kb on + strandat 4246.699 kb on + strandat 4246.699 kb on + strandat 4246.699 kb on + strandat 4246.699 kb on + strandat 4246.700 kb on - strandat 4246.700 kb on - strandat 4246.700 kb on - strandat 4246.700 kb on - strandat 4246.700 kb on - strandat 4246.700 kb on - strandat 4246.704 kb on + strandat 4246.704 kb on + strandat 4246.705 kb on - strandat 4246.705 kb on - strandat 4246.742 kb on + strandat 4246.742 kb on + strandat 4246.743 kb on - strandat 4246.743 kb on - strandat 4246.743 kb on - strandat 4246.813 kb on + strand, within OH686_20755at 4246.813 kb on + strand, within OH686_20755at 4246.813 kb on + strand, within OH686_20755at 4246.813 kb on + strand, within OH686_20755at 4246.813 kb on + strand, within OH686_20755at 4246.813 kb on + strand, within OH686_20755at 4246.814 kb on - strand, within OH686_20755at 4246.814 kb on - strand, within OH686_20755at 4246.814 kb on - strand, within OH686_20755at 4246.814 kb on - strand, within OH686_20755at 4246.814 kb on - strand, within OH686_20755at 4246.879 kb on + strand, within OH686_20755at 4246.880 kb on - strand, within OH686_20755at 4246.969 kb on + strand, within OH686_20755at 4246.970 kb on - strand, within OH686_20755at 4246.970 kb on - strand, within OH686_20755at 4246.970 kb on - strand, within OH686_20755at 4247.059 kb on + strand, within OH686_20755at 4247.060 kb on - strand, within OH686_20755at 4247.060 kb on - strand, within OH686_20755at 4247.060 kb on - strand, within OH686_20755at 4247.095 kb on + strandat 4247.096 kb on - strandat 4247.127 kb on + strandat 4247.128 kb on - strandat 4247.605 kb on + strand, within OH686_20760at 4247.605 kb on + strand, within OH686_20760at 4247.605 kb on + strand, within OH686_20760at 4247.605 kb on + strand, within OH686_20760at 4247.605 kb on + strand, within OH686_20760at 4247.606 kb on - strand, within OH686_20760at 4247.606 kb on - strand, within OH686_20760at 4247.606 kb on - strand, within OH686_20760at 4247.606 kb on - strand, within OH686_20760at 4247.606 kb on - strand, within OH686_20760at 4247.606 kb on - strand, within OH686_20760at 4247.606 kb on - strand, within OH686_20760at 4247.908 kb on + strand, within OH686_20765at 4248.056 kb on + strand, within OH686_20765at 4248.056 kb on + strand, within OH686_20765at 4248.056 kb on + strand, within OH686_20765at 4248.056 kb on + strand, within OH686_20765at 4248.057 kb on - strand, within OH686_20765at 4248.057 kb on - strand, within OH686_20765at 4248.057 kb on - strand, within OH686_20765at 4248.468 kb on + strand, within OH686_20765at 4248.469 kb on - strand, within OH686_20765at 4248.469 kb on - strand, within OH686_20765at 4248.510 kb on - strand, within OH686_20765at 4248.624 kb on + strand, within OH686_20765at 4248.624 kb on + strand, within OH686_20765at 4248.624 kb on + strand, within OH686_20765at 4248.625 kb on - strand, within OH686_20765at 4248.636 kb on + strand, within OH686_20765at 4248.636 kb on + strand, within OH686_20765at 4248.636 kb on + strand, within OH686_20765at 4248.636 kb on + strand, within OH686_20765at 4248.636 kb on + strand, within OH686_20765at 4248.636 kb on + strand, within OH686_20765at 4248.636 kb on + strand, within OH686_20765at 4248.636 kb on + strand, within OH686_20765at 4248.637 kb on - strand, within OH686_20765at 4248.637 kb on - strand, within OH686_20765at 4248.637 kb on - strand, within OH686_20765at 4248.637 kb on - strand, within OH686_20765at 4248.637 kb on - strand, within OH686_20765at 4248.637 kb on - strand, within OH686_20765at 4248.750 kb on + strand, within OH686_20765at 4248.751 kb on - strand, within OH686_20765at 4248.751 kb on - strand, within OH686_20765at 4248.855 kb on + strand, within OH686_20765at 4248.855 kb on + strand, within OH686_20765at 4248.855 kb on + strand, within OH686_20765at 4249.019 kb on + strandat 4249.019 kb on + strandat 4249.020 kb on - strandat 4249.020 kb on - strandat 4249.020 kb on - strandat 4249.020 kb on - strandat 4249.020 kb on - strandat 4249.020 kb on - strandat 4249.020 kb on - strandat 4249.020 kb on - strandat 4249.030 kb on + strandat 4249.030 kb on + strandat 4249.030 kb on + strandat 4249.030 kb on + strandat 4249.031 kb on - strandat 4249.031 kb on - strandat 4249.031 kb on - strandat 4249.031 kb on - strandat 4249.073 kb on + strandat 4249.280 kb on + strand, within OH686_20770at 4249.280 kb on + strand, within OH686_20770at 4249.280 kb on + strand, within OH686_20770at 4249.281 kb on - strand, within OH686_20770at 4249.560 kb on - strandat 4249.560 kb on - strandat 4249.594 kb on + strandat 4249.595 kb on - strandat 4249.625 kb on + strandat 4249.625 kb on + strandat 4249.625 kb on + strandat 4249.625 kb on + strandat 4249.626 kb on - strandat 4249.626 kb on - strandat 4249.626 kb on - strandat 4249.628 kb on + strandat 4249.628 kb on + strandat 4249.628 kb on + strandat 4249.628 kb on + strandat 4249.628 kb on + strandat 4249.628 kb on + strandat 4249.628 kb on + strandat 4249.628 kb on + strandat 4249.628 kb on + strandat 4249.628 kb on + strandat 4249.629 kb on - strandat 4249.629 kb on - strandat 4249.629 kb on - strandat 4249.629 kb on - strandat 4249.629 kb on - strandat 4249.631 kb on + strandat 4249.731 kb on - strand, within OH686_20775at 4249.731 kb on - strand, within OH686_20775at 4249.731 kb on - strand, within OH686_20775at 4249.886 kb on + strand, within OH686_20775at 4249.886 kb on + strand, within OH686_20775at 4249.886 kb on + strand, within OH686_20775at 4249.886 kb on + strand, within OH686_20775at 4249.886 kb on + strand, within OH686_20775at 4249.887 kb on - strand, within OH686_20775at 4249.887 kb on - strand, within OH686_20775at 4249.997 kb on + strand, within OH686_20775at 4249.997 kb on + strand, within OH686_20775at 4249.997 kb on + strand, within OH686_20775at 4249.997 kb on + strand, within OH686_20775at 4249.997 kb on + strand, within OH686_20775at 4249.997 kb on + strand, within OH686_20775at 4249.997 kb on + strand, within OH686_20775at 4249.998 kb on - strand, within OH686_20775at 4249.998 kb on - strand, within OH686_20775at 4249.998 kb on - strand, within OH686_20775

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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4,246,699 + +0.5
4,246,699 + -0.7
4,246,699 + -0.2
4,246,699 + +0.3
4,246,699 + -0.8
4,246,699 + -0.7
4,246,700 - -0.2
4,246,700 - -0.2
4,246,700 - +0.8
4,246,700 - -0.2
4,246,700 - +0.3
4,246,700 - +0.6
4,246,704 + -0.4
4,246,704 + -1.2
4,246,705 - -1.1
4,246,705 - +0.5
4,246,742 + -2.3
4,246,742 + -0.2
4,246,743 - -0.2
4,246,743 - +0.3
4,246,743 - -0.7
4,246,813 + OH686_20755 0.18 -0.9
4,246,813 + OH686_20755 0.18 +0.1
4,246,813 + OH686_20755 0.18 -1.1
4,246,813 + OH686_20755 0.18 -0.8
4,246,813 + OH686_20755 0.18 -0.5
4,246,813 + OH686_20755 0.18 +0.3
4,246,814 - OH686_20755 0.18 +0.2
4,246,814 - OH686_20755 0.18 +0.6
4,246,814 - OH686_20755 0.18 -0.1
4,246,814 - OH686_20755 0.18 -1.4
4,246,814 - OH686_20755 0.18 +0.3
4,246,879 + OH686_20755 0.37 +0.4
4,246,880 - OH686_20755 0.37 -1.5
4,246,969 + OH686_20755 0.63 -1.6
4,246,970 - OH686_20755 0.63 +0.1
4,246,970 - OH686_20755 0.63 +0.6
4,246,970 - OH686_20755 0.63 -0.1
4,247,059 + OH686_20755 0.89 -0.0
4,247,060 - OH686_20755 0.89 -0.2
4,247,060 - OH686_20755 0.89 -0.5
4,247,060 - OH686_20755 0.89 +0.1
4,247,095 + -1.0
4,247,096 - +0.8
4,247,127 + +0.2
4,247,128 - +1.0
4,247,605 + OH686_20760 0.85 +0.1
4,247,605 + OH686_20760 0.85 +0.2
4,247,605 + OH686_20760 0.85 +0.1
4,247,605 + OH686_20760 0.85 -0.5
4,247,605 + OH686_20760 0.85 +0.9
4,247,606 - OH686_20760 0.86 +0.2
4,247,606 - OH686_20760 0.86 +0.2
4,247,606 - OH686_20760 0.86 +0.2
4,247,606 - OH686_20760 0.86 +0.1
4,247,606 - OH686_20760 0.86 +1.0
4,247,606 - OH686_20760 0.86 +0.1
4,247,606 - OH686_20760 0.86 -0.4
4,247,908 + OH686_20765 0.16 +0.6
4,248,056 + OH686_20765 0.27 -0.1
4,248,056 + OH686_20765 0.27 +0.9
4,248,056 + OH686_20765 0.27 +0.2
4,248,056 + OH686_20765 0.27 -1.8
4,248,057 - OH686_20765 0.28 -0.4
4,248,057 - OH686_20765 0.28 +1.1
4,248,057 - OH686_20765 0.28 +0.1
4,248,468 + OH686_20765 0.59 +0.2
4,248,469 - OH686_20765 0.59 -0.2
4,248,469 - OH686_20765 0.59 +0.4
4,248,510 - OH686_20765 0.62 -0.1
4,248,624 + OH686_20765 0.70 +0.1
4,248,624 + OH686_20765 0.70 -0.4
4,248,624 + OH686_20765 0.70 +0.1
4,248,625 - OH686_20765 0.70 +1.1
4,248,636 + OH686_20765 0.71 -0.9
4,248,636 + OH686_20765 0.71 -0.2
4,248,636 + OH686_20765 0.71 -0.4
4,248,636 + OH686_20765 0.71 -0.7
4,248,636 + OH686_20765 0.71 -0.3
4,248,636 + OH686_20765 0.71 +0.8
4,248,636 + OH686_20765 0.71 -0.2
4,248,636 + OH686_20765 0.71 +1.1
4,248,637 - OH686_20765 0.71 +0.2
4,248,637 - OH686_20765 0.71 -0.2
4,248,637 - OH686_20765 0.71 +0.5
4,248,637 - OH686_20765 0.71 +0.3
4,248,637 - OH686_20765 0.71 +0.4
4,248,637 - OH686_20765 0.71 +0.3
4,248,750 + OH686_20765 0.80 -1.4
4,248,751 - OH686_20765 0.80 -0.9
4,248,751 - OH686_20765 0.80 -0.1
4,248,855 + OH686_20765 0.88 +0.6
4,248,855 + OH686_20765 0.88 -0.0
4,248,855 + OH686_20765 0.88 -0.1
4,249,019 + -0.4
4,249,019 + -0.3
4,249,020 - -0.4
4,249,020 - +0.5
4,249,020 - +0.2
4,249,020 - -0.2
4,249,020 - -0.7
4,249,020 - -0.4
4,249,020 - -1.0
4,249,020 - +0.1
4,249,030 + -1.6
4,249,030 + -0.4
4,249,030 + -1.1
4,249,030 + -0.2
4,249,031 - -0.9
4,249,031 - -0.1
4,249,031 - +0.4
4,249,031 - -0.9
4,249,073 + +0.4
4,249,280 + OH686_20770 0.47 +0.2
4,249,280 + OH686_20770 0.47 -0.9
4,249,280 + OH686_20770 0.47 +0.4
4,249,281 - OH686_20770 0.48 +0.0
4,249,560 - +0.8
4,249,560 - +0.0
4,249,594 + +0.3
4,249,595 - +0.7
4,249,625 + -0.9
4,249,625 + +0.2
4,249,625 + -0.4
4,249,625 + +1.1
4,249,626 - +0.3
4,249,626 - +1.0
4,249,626 - +0.5
4,249,628 + +0.6
4,249,628 + -0.9
4,249,628 + -0.4
4,249,628 + -0.5
4,249,628 + -0.5
4,249,628 + -0.2
4,249,628 + -0.0
4,249,628 + -0.4
4,249,628 + -0.3
4,249,628 + +0.6
4,249,629 - -0.9
4,249,629 - +0.6
4,249,629 - +0.3
4,249,629 - -0.3
4,249,629 - +0.9
4,249,631 + +0.5
4,249,731 - OH686_20775 0.17 +0.1
4,249,731 - OH686_20775 0.17 +1.1
4,249,731 - OH686_20775 0.17 -0.1
4,249,886 + OH686_20775 0.40 -0.2
4,249,886 + OH686_20775 0.40 -0.1
4,249,886 + OH686_20775 0.40 -0.4
4,249,886 + OH686_20775 0.40 +1.2
4,249,886 + OH686_20775 0.40 -1.3
4,249,887 - OH686_20775 0.40 -1.0
4,249,887 - OH686_20775 0.40 -0.3
4,249,997 + OH686_20775 0.56 +0.1
4,249,997 + OH686_20775 0.56 +0.5
4,249,997 + OH686_20775 0.56 -0.2
4,249,997 + OH686_20775 0.56 -0.1
4,249,997 + OH686_20775 0.56 -1.2
4,249,997 + OH686_20775 0.56 -0.4
4,249,997 + OH686_20775 0.56 -0.8
4,249,998 - OH686_20775 0.56 +1.6
4,249,998 - OH686_20775 0.56 +0.4
4,249,998 - OH686_20775 0.56 -0.7

Or see this region's nucleotide sequence