Strain Fitness in Pseudomonas sp. S08-1 around OH686_20130

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_20125 and OH686_20130 are separated by 139 nucleotidesOH686_20130 and OH686_20135 are separated by 100 nucleotidesOH686_20135 and OH686_20140 are separated by 17 nucleotides OH686_20125: OH686_20125 - Endonuclease I precursor , at 4,114,361 to 4,115,083 _20125 OH686_20130: OH686_20130 - hypothetical protein, at 4,115,223 to 4,115,546 _20130 OH686_20135: OH686_20135 - Protein serine/threonine phosphatase PrpC, regulation of stationary phase, at 4,115,647 to 4,116,420 _20135 OH686_20140: OH686_20140 - serine/threonine protein kinase, at 4,116,438 to 4,118,126 _20140 Position (kb) 4115 4116Strain fitness (log2 ratio) -2 -1 0 1at 4114.262 kb on - strandat 4114.262 kb on - strandat 4114.262 kb on - strandat 4114.292 kb on + strandat 4114.292 kb on + strandat 4114.292 kb on + strandat 4114.292 kb on + strandat 4114.293 kb on - strandat 4114.293 kb on - strandat 4114.293 kb on - strandat 4114.339 kb on + strandat 4114.339 kb on + strandat 4114.358 kb on + strandat 4114.358 kb on + strandat 4114.358 kb on + strandat 4114.358 kb on + strandat 4114.358 kb on + strandat 4114.359 kb on - strandat 4114.359 kb on - strandat 4114.359 kb on - strandat 4114.359 kb on - strandat 4114.362 kb on + strandat 4114.362 kb on + strandat 4114.363 kb on - strandat 4114.363 kb on - strandat 4114.457 kb on - strand, within OH686_20125at 4114.495 kb on - strand, within OH686_20125at 4114.566 kb on + strand, within OH686_20125at 4114.566 kb on + strand, within OH686_20125at 4114.566 kb on + strand, within OH686_20125at 4114.566 kb on + strand, within OH686_20125at 4114.566 kb on + strand, within OH686_20125at 4114.566 kb on + strand, within OH686_20125at 4114.566 kb on + strand, within OH686_20125at 4114.566 kb on + strand, within OH686_20125at 4114.566 kb on + strand, within OH686_20125at 4114.566 kb on + strand, within OH686_20125at 4114.567 kb on - strand, within OH686_20125at 4114.567 kb on - strand, within OH686_20125at 4114.567 kb on - strand, within OH686_20125at 4114.567 kb on - strand, within OH686_20125at 4114.567 kb on - strand, within OH686_20125at 4114.567 kb on - strand, within OH686_20125at 4114.567 kb on - strand, within OH686_20125at 4114.567 kb on - strand, within OH686_20125at 4114.567 kb on - strand, within OH686_20125at 4114.567 kb on - strand, within OH686_20125at 4114.567 kb on - strand, within OH686_20125at 4114.567 kb on - strand, within OH686_20125at 4114.567 kb on - strand, within OH686_20125at 4114.572 kb on + strand, within OH686_20125at 4114.572 kb on + strand, within OH686_20125at 4114.572 kb on + strand, within OH686_20125at 4114.572 kb on + strand, within OH686_20125at 4114.572 kb on + strand, within OH686_20125at 4114.573 kb on - strand, within OH686_20125at 4114.573 kb on - strand, within OH686_20125at 4114.573 kb on - strand, within OH686_20125at 4114.573 kb on - strand, within OH686_20125at 4114.573 kb on - strand, within OH686_20125at 4114.573 kb on - strand, within OH686_20125at 4114.573 kb on - strand, within OH686_20125at 4114.657 kb on - strand, within OH686_20125at 4114.657 kb on - strand, within OH686_20125at 4114.950 kb on + strand, within OH686_20125at 4114.951 kb on - strand, within OH686_20125at 4114.951 kb on - strand, within OH686_20125at 4114.951 kb on - strand, within OH686_20125at 4114.951 kb on - strand, within OH686_20125at 4114.951 kb on - strand, within OH686_20125at 4114.974 kb on + strand, within OH686_20125at 4114.974 kb on + strand, within OH686_20125at 4114.974 kb on + strand, within OH686_20125at 4114.974 kb on + strand, within OH686_20125at 4114.974 kb on + strand, within OH686_20125at 4114.975 kb on - strand, within OH686_20125at 4115.116 kb on + strandat 4115.116 kb on + strandat 4115.116 kb on + strandat 4115.165 kb on - strandat 4115.187 kb on + strandat 4115.187 kb on + strandat 4115.310 kb on + strand, within OH686_20130at 4115.310 kb on + strand, within OH686_20130at 4115.310 kb on + strand, within OH686_20130at 4115.310 kb on + strand, within OH686_20130at 4115.310 kb on + strand, within OH686_20130at 4115.311 kb on - strand, within OH686_20130at 4115.311 kb on - strand, within OH686_20130at 4115.311 kb on - strand, within OH686_20130at 4115.311 kb on - strand, within OH686_20130at 4115.311 kb on - strand, within OH686_20130at 4115.311 kb on - strand, within OH686_20130at 4115.364 kb on + strand, within OH686_20130at 4115.364 kb on + strand, within OH686_20130at 4115.364 kb on + strand, within OH686_20130at 4115.364 kb on + strand, within OH686_20130at 4115.364 kb on + strand, within OH686_20130at 4115.364 kb on + strand, within OH686_20130at 4115.365 kb on - strand, within OH686_20130at 4115.365 kb on - strand, within OH686_20130at 4115.365 kb on - strand, within OH686_20130at 4115.365 kb on - strand, within OH686_20130at 4115.365 kb on - strand, within OH686_20130at 4115.365 kb on - strand, within OH686_20130at 4115.365 kb on - strand, within OH686_20130at 4115.365 kb on - strand, within OH686_20130at 4115.373 kb on + strand, within OH686_20130at 4115.373 kb on + strand, within OH686_20130at 4115.374 kb on - strand, within OH686_20130at 4115.390 kb on - strand, within OH686_20130at 4115.403 kb on + strand, within OH686_20130at 4115.404 kb on - strand, within OH686_20130at 4115.523 kb on + strandat 4115.523 kb on + strandat 4115.523 kb on + strandat 4115.524 kb on - strandat 4115.524 kb on - strandat 4115.524 kb on - strandat 4115.524 kb on - strandat 4115.530 kb on + strandat 4115.530 kb on + strandat 4115.530 kb on + strandat 4115.531 kb on - strandat 4115.531 kb on - strandat 4115.531 kb on - strandat 4115.555 kb on + strandat 4115.556 kb on - strandat 4115.629 kb on + strandat 4115.629 kb on + strandat 4115.630 kb on - strandat 4115.630 kb on - strandat 4115.700 kb on + strandat 4115.701 kb on - strandat 4115.748 kb on - strand, within OH686_20135at 4115.916 kb on + strand, within OH686_20135at 4115.916 kb on + strand, within OH686_20135at 4116.318 kb on + strand, within OH686_20135at 4116.318 kb on + strand, within OH686_20135at 4116.318 kb on + strand, within OH686_20135at 4116.318 kb on + strand, within OH686_20135at 4116.319 kb on - strand, within OH686_20135at 4116.319 kb on - strand, within OH686_20135at 4116.319 kb on - strand, within OH686_20135at 4116.319 kb on - strand, within OH686_20135at 4116.319 kb on - strand, within OH686_20135at 4116.319 kb on - strand, within OH686_20135at 4116.319 kb on - strand, within OH686_20135at 4116.319 kb on - strand, within OH686_20135at 4116.319 kb on - strand, within OH686_20135

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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4,114,262 - -2.6
4,114,262 - -0.3
4,114,262 - +0.8
4,114,292 + -0.2
4,114,292 + +0.6
4,114,292 + -1.3
4,114,292 + -1.3
4,114,293 - -1.1
4,114,293 - +0.5
4,114,293 - +0.1
4,114,339 + +0.2
4,114,339 + -0.3
4,114,358 + +0.8
4,114,358 + -0.8
4,114,358 + -1.2
4,114,358 + +0.7
4,114,358 + +0.2
4,114,359 - -0.2
4,114,359 - +0.5
4,114,359 - +0.3
4,114,359 - -0.3
4,114,362 + +0.4
4,114,362 + -0.9
4,114,363 - -0.4
4,114,363 - +0.3
4,114,457 - OH686_20125 0.13 -0.2
4,114,495 - OH686_20125 0.19 +0.0
4,114,566 + OH686_20125 0.28 +0.1
4,114,566 + OH686_20125 0.28 -0.2
4,114,566 + OH686_20125 0.28 -0.1
4,114,566 + OH686_20125 0.28 -1.2
4,114,566 + OH686_20125 0.28 -0.1
4,114,566 + OH686_20125 0.28 -0.3
4,114,566 + OH686_20125 0.28 +0.4
4,114,566 + OH686_20125 0.28 +0.6
4,114,566 + OH686_20125 0.28 -0.1
4,114,566 + OH686_20125 0.28 -0.4
4,114,567 - OH686_20125 0.28 +0.2
4,114,567 - OH686_20125 0.28 +0.6
4,114,567 - OH686_20125 0.28 +1.6
4,114,567 - OH686_20125 0.28 +0.2
4,114,567 - OH686_20125 0.28 +0.2
4,114,567 - OH686_20125 0.28 -0.1
4,114,567 - OH686_20125 0.28 +0.3
4,114,567 - OH686_20125 0.28 +0.4
4,114,567 - OH686_20125 0.28 -0.1
4,114,567 - OH686_20125 0.28 +0.8
4,114,567 - OH686_20125 0.28 -0.2
4,114,567 - OH686_20125 0.28 +0.2
4,114,567 - OH686_20125 0.28 +0.6
4,114,572 + OH686_20125 0.29 -0.7
4,114,572 + OH686_20125 0.29 -2.3
4,114,572 + OH686_20125 0.29 -0.3
4,114,572 + OH686_20125 0.29 -0.2
4,114,572 + OH686_20125 0.29 -0.5
4,114,573 - OH686_20125 0.29 -0.6
4,114,573 - OH686_20125 0.29 -0.2
4,114,573 - OH686_20125 0.29 +0.4
4,114,573 - OH686_20125 0.29 -1.2
4,114,573 - OH686_20125 0.29 -0.2
4,114,573 - OH686_20125 0.29 -0.2
4,114,573 - OH686_20125 0.29 +0.5
4,114,657 - OH686_20125 0.41 +0.3
4,114,657 - OH686_20125 0.41 +0.9
4,114,950 + OH686_20125 0.81 +0.3
4,114,951 - OH686_20125 0.82 +0.6
4,114,951 - OH686_20125 0.82 -0.1
4,114,951 - OH686_20125 0.82 +0.1
4,114,951 - OH686_20125 0.82 -0.4
4,114,951 - OH686_20125 0.82 +1.0
4,114,974 + OH686_20125 0.85 -0.2
4,114,974 + OH686_20125 0.85 -0.0
4,114,974 + OH686_20125 0.85 -0.2
4,114,974 + OH686_20125 0.85 -1.8
4,114,974 + OH686_20125 0.85 -1.0
4,114,975 - OH686_20125 0.85 +0.0
4,115,116 + +0.2
4,115,116 + +0.0
4,115,116 + -0.2
4,115,165 - +0.2
4,115,187 + +0.0
4,115,187 + -0.4
4,115,310 + OH686_20130 0.27 -0.6
4,115,310 + OH686_20130 0.27 -1.6
4,115,310 + OH686_20130 0.27 +0.2
4,115,310 + OH686_20130 0.27 -0.1
4,115,310 + OH686_20130 0.27 -0.5
4,115,311 - OH686_20130 0.27 +0.4
4,115,311 - OH686_20130 0.27 -0.2
4,115,311 - OH686_20130 0.27 +0.1
4,115,311 - OH686_20130 0.27 -0.8
4,115,311 - OH686_20130 0.27 -0.4
4,115,311 - OH686_20130 0.27 +0.9
4,115,364 + OH686_20130 0.44 +0.6
4,115,364 + OH686_20130 0.44 -0.8
4,115,364 + OH686_20130 0.44 +0.2
4,115,364 + OH686_20130 0.44 -1.4
4,115,364 + OH686_20130 0.44 -0.6
4,115,364 + OH686_20130 0.44 -0.5
4,115,365 - OH686_20130 0.44 +0.3
4,115,365 - OH686_20130 0.44 +0.9
4,115,365 - OH686_20130 0.44 -0.3
4,115,365 - OH686_20130 0.44 +0.6
4,115,365 - OH686_20130 0.44 -0.2
4,115,365 - OH686_20130 0.44 -1.6
4,115,365 - OH686_20130 0.44 +0.4
4,115,365 - OH686_20130 0.44 -0.4
4,115,373 + OH686_20130 0.46 -0.0
4,115,373 + OH686_20130 0.46 -0.5
4,115,374 - OH686_20130 0.47 +0.2
4,115,390 - OH686_20130 0.52 -0.2
4,115,403 + OH686_20130 0.56 -0.7
4,115,404 - OH686_20130 0.56 -0.8
4,115,523 + -0.4
4,115,523 + -0.6
4,115,523 + +0.3
4,115,524 - -0.1
4,115,524 - -1.3
4,115,524 - -0.0
4,115,524 - -1.5
4,115,530 + +0.4
4,115,530 + +1.0
4,115,530 + +0.1
4,115,531 - +0.7
4,115,531 - +0.1
4,115,531 - +0.3
4,115,555 + -0.1
4,115,556 - -1.7
4,115,629 + -0.3
4,115,629 + -0.2
4,115,630 - -0.8
4,115,630 - -0.5
4,115,700 + -0.3
4,115,701 - +0.3
4,115,748 - OH686_20135 0.13 -0.2
4,115,916 + OH686_20135 0.35 +0.9
4,115,916 + OH686_20135 0.35 +0.7
4,116,318 + OH686_20135 0.87 +0.4
4,116,318 + OH686_20135 0.87 +0.3
4,116,318 + OH686_20135 0.87 +1.0
4,116,318 + OH686_20135 0.87 +1.0
4,116,319 - OH686_20135 0.87 +0.5
4,116,319 - OH686_20135 0.87 +0.5
4,116,319 - OH686_20135 0.87 +0.4
4,116,319 - OH686_20135 0.87 -0.2
4,116,319 - OH686_20135 0.87 +0.5
4,116,319 - OH686_20135 0.87 -0.3
4,116,319 - OH686_20135 0.87 +0.5
4,116,319 - OH686_20135 0.87 +1.1
4,116,319 - OH686_20135 0.87 +0.2

Or see this region's nucleotide sequence