Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OH686_18360 and OH686_18365 are separated by 73 nucleotides OH686_18365 and OH686_18370 overlap by 25 nucleotides OH686_18370 and OH686_18375 are separated by 35 nucleotides OH686_18375 and OH686_18380 are separated by 68 nucleotides OH686_18380 and OH686_18385 are separated by 114 nucleotides
OH686_18360: OH686_18360 - Short-chain dehydrogenase/reductase SDR, at 3,819,424 to 3,820,161
_18360
OH686_18365: OH686_18365 - hypothetical protein' product='hypothetical protein, at 3,820,235 to 3,820,543
_18365
OH686_18370: OH686_18370 - hypothetical protein, at 3,820,519 to 3,820,935
_18370
OH686_18375: OH686_18375 - hypothetical protein, at 3,820,971 to 3,821,273
_18375
OH686_18380: OH686_18380 - Short-chain dehydrogenase, at 3,821,342 to 3,821,941
_18380
OH686_18385: OH686_18385 - Transcriptional regulator, LysR family, at 3,822,056 to 3,822,967
_18385
Position (kb)
3820
3821
3822 Strain fitness (log2 ratio)
-2
-1
0
1 at 3820.091 kb on - strand at 3820.157 kb on - strand at 3820.196 kb on - strand at 3820.547 kb on + strand at 3820.547 kb on + strand at 3820.547 kb on + strand at 3820.547 kb on + strand at 3820.547 kb on + strand at 3820.547 kb on + strand at 3820.548 kb on - strand at 3820.548 kb on - strand at 3820.548 kb on - strand at 3820.548 kb on - strand at 3820.548 kb on - strand at 3820.796 kb on + strand, within OH686_18370 at 3820.796 kb on + strand, within OH686_18370 at 3820.796 kb on + strand, within OH686_18370 at 3820.796 kb on + strand, within OH686_18370 at 3821.038 kb on + strand, within OH686_18375 at 3821.038 kb on + strand, within OH686_18375 at 3821.038 kb on + strand, within OH686_18375 at 3821.038 kb on + strand, within OH686_18375 at 3821.038 kb on + strand, within OH686_18375 at 3821.038 kb on + strand, within OH686_18375 at 3821.038 kb on + strand, within OH686_18375 at 3821.038 kb on + strand, within OH686_18375 at 3821.038 kb on + strand, within OH686_18375 at 3821.039 kb on - strand, within OH686_18375 at 3821.039 kb on - strand, within OH686_18375 at 3821.039 kb on - strand, within OH686_18375 at 3821.039 kb on - strand, within OH686_18375 at 3821.039 kb on - strand, within OH686_18375 at 3821.039 kb on - strand, within OH686_18375 at 3821.348 kb on + strand at 3821.348 kb on + strand at 3821.349 kb on - strand at 3821.349 kb on - strand at 3821.349 kb on - strand at 3821.349 kb on - strand at 3821.356 kb on - strand at 3821.394 kb on + strand at 3821.394 kb on + strand at 3821.395 kb on - strand at 3821.395 kb on - strand at 3821.442 kb on + strand, within OH686_18380 at 3821.442 kb on + strand, within OH686_18380 at 3821.442 kb on + strand, within OH686_18380 at 3821.442 kb on + strand, within OH686_18380 at 3821.443 kb on - strand, within OH686_18380 at 3821.443 kb on - strand, within OH686_18380 at 3821.443 kb on - strand, within OH686_18380 at 3821.451 kb on + strand, within OH686_18380 at 3821.955 kb on - strand at 3821.979 kb on + strand at 3821.979 kb on + strand at 3821.979 kb on + strand at 3821.980 kb on - strand at 3821.980 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 3,820,091 - -1.0 3,820,157 - -0.6 3,820,196 - +0.7 3,820,547 + -0.7 3,820,547 + -0.2 3,820,547 + -0.3 3,820,547 + -0.5 3,820,547 + +0.5 3,820,547 + +0.2 3,820,548 - -0.3 3,820,548 - -0.2 3,820,548 - -1.0 3,820,548 - +0.1 3,820,548 - -0.7 3,820,796 + OH686_18370 0.66 +0.4 3,820,796 + OH686_18370 0.66 +0.3 3,820,796 + OH686_18370 0.66 -0.3 3,820,796 + OH686_18370 0.66 -1.0 3,821,038 + OH686_18375 0.22 +0.3 3,821,038 + OH686_18375 0.22 -0.6 3,821,038 + OH686_18375 0.22 +0.8 3,821,038 + OH686_18375 0.22 -0.3 3,821,038 + OH686_18375 0.22 +1.4 3,821,038 + OH686_18375 0.22 -1.3 3,821,038 + OH686_18375 0.22 -0.2 3,821,038 + OH686_18375 0.22 -0.5 3,821,038 + OH686_18375 0.22 -1.2 3,821,039 - OH686_18375 0.22 -0.7 3,821,039 - OH686_18375 0.22 -0.2 3,821,039 - OH686_18375 0.22 -0.7 3,821,039 - OH686_18375 0.22 -0.7 3,821,039 - OH686_18375 0.22 -0.3 3,821,039 - OH686_18375 0.22 +1.2 3,821,348 + +0.9 3,821,348 + -1.1 3,821,349 - -0.2 3,821,349 - -1.2 3,821,349 - +0.1 3,821,349 - +0.3 3,821,356 - +0.2 3,821,394 + +0.4 3,821,394 + -0.0 3,821,395 - -1.0 3,821,395 - -0.0 3,821,442 + OH686_18380 0.17 -0.5 3,821,442 + OH686_18380 0.17 -0.1 3,821,442 + OH686_18380 0.17 -0.2 3,821,442 + OH686_18380 0.17 +0.6 3,821,443 - OH686_18380 0.17 -0.2 3,821,443 - OH686_18380 0.17 -0.6 3,821,443 - OH686_18380 0.17 -0.8 3,821,451 + OH686_18380 0.18 -2.6 3,821,955 - -0.1 3,821,979 + +0.8 3,821,979 + -1.4 3,821,979 + +0.3 3,821,980 - +0.5 3,821,980 - -0.3
Or see this region's nucleotide sequence