Strain Fitness in Pseudomonas sp. S08-1 around OH686_18375

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_18360 and OH686_18365 are separated by 73 nucleotidesOH686_18365 and OH686_18370 overlap by 25 nucleotidesOH686_18370 and OH686_18375 are separated by 35 nucleotidesOH686_18375 and OH686_18380 are separated by 68 nucleotidesOH686_18380 and OH686_18385 are separated by 114 nucleotides OH686_18360: OH686_18360 - Short-chain dehydrogenase/reductase SDR, at 3,819,424 to 3,820,161 _18360 OH686_18365: OH686_18365 - hypothetical protein' product='hypothetical protein, at 3,820,235 to 3,820,543 _18365 OH686_18370: OH686_18370 - hypothetical protein, at 3,820,519 to 3,820,935 _18370 OH686_18375: OH686_18375 - hypothetical protein, at 3,820,971 to 3,821,273 _18375 OH686_18380: OH686_18380 - Short-chain dehydrogenase, at 3,821,342 to 3,821,941 _18380 OH686_18385: OH686_18385 - Transcriptional regulator, LysR family, at 3,822,056 to 3,822,967 _18385 Position (kb) 3820 3821 3822Strain fitness (log2 ratio) -2 -1 0 1at 3820.091 kb on - strandat 3820.157 kb on - strandat 3820.196 kb on - strandat 3820.547 kb on + strandat 3820.547 kb on + strandat 3820.547 kb on + strandat 3820.547 kb on + strandat 3820.547 kb on + strandat 3820.547 kb on + strandat 3820.548 kb on - strandat 3820.548 kb on - strandat 3820.548 kb on - strandat 3820.548 kb on - strandat 3820.548 kb on - strandat 3820.796 kb on + strand, within OH686_18370at 3820.796 kb on + strand, within OH686_18370at 3820.796 kb on + strand, within OH686_18370at 3820.796 kb on + strand, within OH686_18370at 3821.038 kb on + strand, within OH686_18375at 3821.038 kb on + strand, within OH686_18375at 3821.038 kb on + strand, within OH686_18375at 3821.038 kb on + strand, within OH686_18375at 3821.038 kb on + strand, within OH686_18375at 3821.038 kb on + strand, within OH686_18375at 3821.038 kb on + strand, within OH686_18375at 3821.038 kb on + strand, within OH686_18375at 3821.038 kb on + strand, within OH686_18375at 3821.039 kb on - strand, within OH686_18375at 3821.039 kb on - strand, within OH686_18375at 3821.039 kb on - strand, within OH686_18375at 3821.039 kb on - strand, within OH686_18375at 3821.039 kb on - strand, within OH686_18375at 3821.039 kb on - strand, within OH686_18375at 3821.348 kb on + strandat 3821.348 kb on + strandat 3821.349 kb on - strandat 3821.349 kb on - strandat 3821.349 kb on - strandat 3821.349 kb on - strandat 3821.356 kb on - strandat 3821.394 kb on + strandat 3821.394 kb on + strandat 3821.395 kb on - strandat 3821.395 kb on - strandat 3821.442 kb on + strand, within OH686_18380at 3821.442 kb on + strand, within OH686_18380at 3821.442 kb on + strand, within OH686_18380at 3821.442 kb on + strand, within OH686_18380at 3821.443 kb on - strand, within OH686_18380at 3821.443 kb on - strand, within OH686_18380at 3821.443 kb on - strand, within OH686_18380at 3821.451 kb on + strand, within OH686_18380at 3821.955 kb on - strandat 3821.979 kb on + strandat 3821.979 kb on + strandat 3821.979 kb on + strandat 3821.980 kb on - strandat 3821.980 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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3,820,091 - -1.0
3,820,157 - -0.6
3,820,196 - +0.7
3,820,547 + -0.7
3,820,547 + -0.2
3,820,547 + -0.3
3,820,547 + -0.5
3,820,547 + +0.5
3,820,547 + +0.2
3,820,548 - -0.3
3,820,548 - -0.2
3,820,548 - -1.0
3,820,548 - +0.1
3,820,548 - -0.7
3,820,796 + OH686_18370 0.66 +0.4
3,820,796 + OH686_18370 0.66 +0.3
3,820,796 + OH686_18370 0.66 -0.3
3,820,796 + OH686_18370 0.66 -1.0
3,821,038 + OH686_18375 0.22 +0.3
3,821,038 + OH686_18375 0.22 -0.6
3,821,038 + OH686_18375 0.22 +0.8
3,821,038 + OH686_18375 0.22 -0.3
3,821,038 + OH686_18375 0.22 +1.4
3,821,038 + OH686_18375 0.22 -1.3
3,821,038 + OH686_18375 0.22 -0.2
3,821,038 + OH686_18375 0.22 -0.5
3,821,038 + OH686_18375 0.22 -1.2
3,821,039 - OH686_18375 0.22 -0.7
3,821,039 - OH686_18375 0.22 -0.2
3,821,039 - OH686_18375 0.22 -0.7
3,821,039 - OH686_18375 0.22 -0.7
3,821,039 - OH686_18375 0.22 -0.3
3,821,039 - OH686_18375 0.22 +1.2
3,821,348 + +0.9
3,821,348 + -1.1
3,821,349 - -0.2
3,821,349 - -1.2
3,821,349 - +0.1
3,821,349 - +0.3
3,821,356 - +0.2
3,821,394 + +0.4
3,821,394 + -0.0
3,821,395 - -1.0
3,821,395 - -0.0
3,821,442 + OH686_18380 0.17 -0.5
3,821,442 + OH686_18380 0.17 -0.1
3,821,442 + OH686_18380 0.17 -0.2
3,821,442 + OH686_18380 0.17 +0.6
3,821,443 - OH686_18380 0.17 -0.2
3,821,443 - OH686_18380 0.17 -0.6
3,821,443 - OH686_18380 0.17 -0.8
3,821,451 + OH686_18380 0.18 -2.6
3,821,955 - -0.1
3,821,979 + +0.8
3,821,979 + -1.4
3,821,979 + +0.3
3,821,980 - +0.5
3,821,980 - -0.3

Or see this region's nucleotide sequence