Strain Fitness in Pseudomonas sp. S08-1 around OH686_13705

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_13695 and OH686_13700 are separated by 103 nucleotidesOH686_13700 and OH686_13705 are separated by 120 nucleotidesOH686_13705 and OH686_13710 are separated by 61 nucleotides OH686_13695: OH686_13695 - alanine racemase, at 2,871,800 to 2,872,873 _13695 OH686_13700: OH686_13700 - Putrescine utilization regulator, at 2,872,977 to 2,873,525 _13700 OH686_13705: OH686_13705 - Cytochrome c5, at 2,873,646 to 2,874,068 _13705 OH686_13710: OH686_13710 - hypothetical protein, at 2,874,130 to 2,876,694 _13710 Position (kb) 2873 2874 2875Strain fitness (log2 ratio) -2 -1 0 1 2at 2872.799 kb on + strandat 2872.859 kb on + strandat 2872.859 kb on + strandat 2872.859 kb on + strandat 2872.859 kb on + strandat 2872.860 kb on - strandat 2872.860 kb on - strandat 2872.860 kb on - strandat 2872.910 kb on + strandat 2872.910 kb on + strandat 2872.914 kb on + strandat 2872.947 kb on + strandat 2872.947 kb on + strandat 2872.947 kb on + strandat 2872.947 kb on + strandat 2872.947 kb on + strandat 2872.947 kb on + strandat 2872.948 kb on - strandat 2872.948 kb on - strandat 2872.948 kb on - strandat 2872.948 kb on - strandat 2872.948 kb on - strandat 2873.003 kb on + strandat 2873.004 kb on - strandat 2873.004 kb on - strandat 2873.004 kb on - strandat 2873.004 kb on - strandat 2873.171 kb on + strand, within OH686_13700at 2873.172 kb on - strand, within OH686_13700at 2873.304 kb on + strand, within OH686_13700at 2873.304 kb on + strand, within OH686_13700at 2873.304 kb on + strand, within OH686_13700at 2873.305 kb on - strand, within OH686_13700at 2873.305 kb on - strand, within OH686_13700at 2873.407 kb on + strand, within OH686_13700at 2873.407 kb on + strand, within OH686_13700at 2873.407 kb on + strand, within OH686_13700at 2873.407 kb on + strand, within OH686_13700at 2873.407 kb on + strand, within OH686_13700at 2873.433 kb on + strand, within OH686_13700at 2873.433 kb on + strand, within OH686_13700at 2873.433 kb on + strand, within OH686_13700at 2873.433 kb on + strand, within OH686_13700at 2873.433 kb on + strand, within OH686_13700at 2873.433 kb on + strand, within OH686_13700at 2873.433 kb on + strand, within OH686_13700at 2873.433 kb on + strand, within OH686_13700at 2873.433 kb on + strand, within OH686_13700at 2873.434 kb on - strand, within OH686_13700at 2873.434 kb on - strand, within OH686_13700at 2873.434 kb on - strand, within OH686_13700at 2873.434 kb on - strand, within OH686_13700at 2873.434 kb on - strand, within OH686_13700at 2873.434 kb on - strand, within OH686_13700at 2873.434 kb on - strand, within OH686_13700at 2873.434 kb on - strand, within OH686_13700at 2873.436 kb on + strand, within OH686_13700at 2873.436 kb on + strand, within OH686_13700at 2873.436 kb on + strand, within OH686_13700at 2873.436 kb on + strand, within OH686_13700at 2873.436 kb on + strand, within OH686_13700at 2873.436 kb on + strand, within OH686_13700at 2873.437 kb on - strand, within OH686_13700at 2873.437 kb on - strand, within OH686_13700at 2873.437 kb on - strand, within OH686_13700at 2873.437 kb on - strand, within OH686_13700at 2873.516 kb on + strandat 2873.523 kb on + strandat 2873.523 kb on + strandat 2873.523 kb on + strandat 2873.523 kb on + strandat 2873.523 kb on + strandat 2873.523 kb on + strandat 2873.523 kb on + strandat 2873.523 kb on + strandat 2873.523 kb on + strandat 2873.524 kb on - strandat 2873.524 kb on - strandat 2873.524 kb on - strandat 2873.524 kb on - strandat 2873.586 kb on + strandat 2873.586 kb on + strandat 2873.586 kb on + strandat 2873.587 kb on - strandat 2873.587 kb on - strandat 2873.587 kb on - strandat 2873.587 kb on - strandat 2873.587 kb on - strandat 2873.588 kb on + strandat 2873.588 kb on + strandat 2873.588 kb on + strandat 2873.588 kb on + strandat 2873.588 kb on + strandat 2873.588 kb on + strandat 2873.588 kb on + strandat 2873.588 kb on + strandat 2873.588 kb on + strandat 2873.589 kb on - strandat 2873.589 kb on - strandat 2873.589 kb on - strandat 2873.627 kb on + strandat 2873.627 kb on + strandat 2873.628 kb on - strandat 2874.066 kb on + strandat 2874.066 kb on + strandat 2874.066 kb on + strandat 2874.066 kb on + strandat 2874.066 kb on + strandat 2874.067 kb on - strandat 2874.067 kb on - strandat 2874.067 kb on - strandat 2874.067 kb on - strandat 2874.131 kb on + strandat 2874.131 kb on + strandat 2874.132 kb on - strandat 2874.132 kb on - strandat 2874.132 kb on - strandat 2874.132 kb on - strandat 2874.132 kb on - strandat 2874.132 kb on - strandat 2874.132 kb on - strandat 2874.151 kb on + strandat 2874.151 kb on + strandat 2874.151 kb on + strandat 2874.152 kb on - strandat 2874.152 kb on - strandat 2874.308 kb on + strandat 2874.309 kb on - strandat 2874.309 kb on - strandat 2874.309 kb on - strandat 2874.309 kb on - strandat 2874.309 kb on - strandat 2874.309 kb on - strandat 2874.347 kb on + strandat 2874.348 kb on - strandat 2874.348 kb on - strandat 2874.348 kb on - strandat 2874.390 kb on - strand, within OH686_13710at 2874.422 kb on + strand, within OH686_13710at 2874.452 kb on + strand, within OH686_13710at 2874.452 kb on + strand, within OH686_13710at 2874.452 kb on + strand, within OH686_13710at 2874.452 kb on + strand, within OH686_13710at 2874.452 kb on + strand, within OH686_13710at 2874.452 kb on + strand, within OH686_13710at 2874.452 kb on + strand, within OH686_13710at 2874.452 kb on + strand, within OH686_13710at 2874.452 kb on + strand, within OH686_13710at 2874.453 kb on - strand, within OH686_13710at 2874.453 kb on - strand, within OH686_13710at 2874.453 kb on - strand, within OH686_13710at 2874.453 kb on - strand, within OH686_13710at 2874.453 kb on - strand, within OH686_13710at 2874.453 kb on - strand, within OH686_13710at 2874.453 kb on - strand, within OH686_13710at 2874.453 kb on - strand, within OH686_13710at 2874.453 kb on - strand, within OH686_13710at 2874.453 kb on - strand, within OH686_13710at 2874.455 kb on + strand, within OH686_13710at 2874.455 kb on + strand, within OH686_13710at 2874.455 kb on + strand, within OH686_13710at 2874.455 kb on + strand, within OH686_13710at 2874.455 kb on + strand, within OH686_13710at 2874.455 kb on + strand, within OH686_13710at 2874.456 kb on - strand, within OH686_13710at 2874.456 kb on - strand, within OH686_13710at 2874.456 kb on - strand, within OH686_13710at 2874.456 kb on - strand, within OH686_13710at 2874.456 kb on - strand, within OH686_13710at 2874.473 kb on + strand, within OH686_13710at 2874.473 kb on + strand, within OH686_13710at 2874.473 kb on + strand, within OH686_13710at 2874.473 kb on + strand, within OH686_13710at 2874.473 kb on + strand, within OH686_13710at 2874.473 kb on + strand, within OH686_13710at 2874.473 kb on + strand, within OH686_13710at 2874.473 kb on + strand, within OH686_13710at 2874.473 kb on + strand, within OH686_13710at 2874.474 kb on - strand, within OH686_13710at 2874.474 kb on - strand, within OH686_13710at 2874.474 kb on - strand, within OH686_13710at 2874.491 kb on + strand, within OH686_13710at 2874.491 kb on + strand, within OH686_13710at 2874.492 kb on - strand, within OH686_13710at 2874.551 kb on + strand, within OH686_13710at 2874.551 kb on + strand, within OH686_13710at 2874.551 kb on + strand, within OH686_13710at 2874.551 kb on + strand, within OH686_13710at 2874.551 kb on + strand, within OH686_13710at 2874.551 kb on + strand, within OH686_13710at 2874.551 kb on + strand, within OH686_13710at 2874.551 kb on + strand, within OH686_13710at 2874.551 kb on + strand, within OH686_13710at 2874.551 kb on + strand, within OH686_13710at 2874.551 kb on + strand, within OH686_13710at 2874.551 kb on + strand, within OH686_13710at 2874.551 kb on + strand, within OH686_13710at 2874.552 kb on - strand, within OH686_13710at 2874.552 kb on - strand, within OH686_13710at 2874.552 kb on - strand, within OH686_13710at 2874.552 kb on - strand, within OH686_13710at 2874.662 kb on + strand, within OH686_13710at 2874.662 kb on + strand, within OH686_13710at 2874.662 kb on + strand, within OH686_13710at 2874.662 kb on + strand, within OH686_13710at 2874.663 kb on - strand, within OH686_13710at 2874.663 kb on - strand, within OH686_13710at 2874.663 kb on - strand, within OH686_13710at 2874.663 kb on - strand, within OH686_13710at 2874.710 kb on + strand, within OH686_13710at 2874.717 kb on - strand, within OH686_13710at 2874.770 kb on + strand, within OH686_13710at 2874.770 kb on + strand, within OH686_13710at 2874.770 kb on + strand, within OH686_13710at 2874.770 kb on + strand, within OH686_13710at 2874.771 kb on - strand, within OH686_13710at 2874.771 kb on - strand, within OH686_13710at 2874.771 kb on - strand, within OH686_13710at 2874.771 kb on - strand, within OH686_13710at 2874.887 kb on + strand, within OH686_13710at 2874.887 kb on + strand, within OH686_13710at 2874.887 kb on + strand, within OH686_13710at 2874.887 kb on + strand, within OH686_13710at 2874.887 kb on + strand, within OH686_13710at 2874.887 kb on + strand, within OH686_13710at 2874.888 kb on - strand, within OH686_13710at 2875.005 kb on - strand, within OH686_13710at 2875.016 kb on - strand, within OH686_13710at 2875.016 kb on - strand, within OH686_13710

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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2,872,799 + -0.2
2,872,859 + +0.6
2,872,859 + +0.2
2,872,859 + -0.2
2,872,859 + -0.0
2,872,860 - -0.2
2,872,860 - -0.0
2,872,860 - +0.5
2,872,910 + +1.0
2,872,910 + +1.3
2,872,914 + +0.6
2,872,947 + +0.4
2,872,947 + -2.7
2,872,947 + -0.7
2,872,947 + +0.6
2,872,947 + +1.0
2,872,947 + +0.8
2,872,948 - -0.2
2,872,948 - -0.4
2,872,948 - -0.6
2,872,948 - +0.4
2,872,948 - +0.0
2,873,003 + -2.2
2,873,004 - -0.3
2,873,004 - +0.6
2,873,004 - +1.2
2,873,004 - -1.7
2,873,171 + OH686_13700 0.35 +0.6
2,873,172 - OH686_13700 0.36 -0.7
2,873,304 + OH686_13700 0.60 -0.4
2,873,304 + OH686_13700 0.60 -0.2
2,873,304 + OH686_13700 0.60 +0.0
2,873,305 - OH686_13700 0.60 -1.0
2,873,305 - OH686_13700 0.60 +0.4
2,873,407 + OH686_13700 0.78 -0.1
2,873,407 + OH686_13700 0.78 +0.3
2,873,407 + OH686_13700 0.78 -0.4
2,873,407 + OH686_13700 0.78 -1.0
2,873,407 + OH686_13700 0.78 -0.7
2,873,433 + OH686_13700 0.83 -1.4
2,873,433 + OH686_13700 0.83 -0.3
2,873,433 + OH686_13700 0.83 +0.2
2,873,433 + OH686_13700 0.83 -2.2
2,873,433 + OH686_13700 0.83 -0.5
2,873,433 + OH686_13700 0.83 -0.8
2,873,433 + OH686_13700 0.83 +1.3
2,873,433 + OH686_13700 0.83 -1.1
2,873,433 + OH686_13700 0.83 -0.7
2,873,434 - OH686_13700 0.83 +0.6
2,873,434 - OH686_13700 0.83 -0.4
2,873,434 - OH686_13700 0.83 +0.4
2,873,434 - OH686_13700 0.83 -2.6
2,873,434 - OH686_13700 0.83 -0.7
2,873,434 - OH686_13700 0.83 -0.4
2,873,434 - OH686_13700 0.83 -0.7
2,873,434 - OH686_13700 0.83 +0.1
2,873,436 + OH686_13700 0.84 -0.7
2,873,436 + OH686_13700 0.84 +0.8
2,873,436 + OH686_13700 0.84 -0.5
2,873,436 + OH686_13700 0.84 +0.6
2,873,436 + OH686_13700 0.84 -1.2
2,873,436 + OH686_13700 0.84 -1.2
2,873,437 - OH686_13700 0.84 -1.6
2,873,437 - OH686_13700 0.84 +0.0
2,873,437 - OH686_13700 0.84 +0.0
2,873,437 - OH686_13700 0.84 +0.4
2,873,516 + -1.5
2,873,523 + +0.0
2,873,523 + +0.6
2,873,523 + +0.1
2,873,523 + -0.7
2,873,523 + +0.6
2,873,523 + -0.2
2,873,523 + +0.2
2,873,523 + +0.6
2,873,523 + -1.1
2,873,524 - +0.6
2,873,524 - -1.0
2,873,524 - +0.8
2,873,524 - -0.2
2,873,586 + -0.7
2,873,586 + -0.2
2,873,586 + +0.6
2,873,587 - +0.5
2,873,587 - +0.0
2,873,587 - +0.1
2,873,587 - +0.9
2,873,587 - -0.6
2,873,588 + -1.2
2,873,588 + +0.2
2,873,588 + -0.7
2,873,588 + -0.6
2,873,588 + +0.0
2,873,588 + -0.6
2,873,588 + +0.1
2,873,588 + +0.1
2,873,588 + -0.4
2,873,589 - +1.3
2,873,589 - -0.7
2,873,589 - -0.7
2,873,627 + -2.0
2,873,627 + +0.1
2,873,628 - +0.0
2,874,066 + -0.3
2,874,066 + +0.2
2,874,066 + -0.3
2,874,066 + +0.5
2,874,066 + -0.5
2,874,067 - -0.2
2,874,067 - -1.7
2,874,067 - +0.2
2,874,067 - +0.3
2,874,131 + -0.3
2,874,131 + -0.4
2,874,132 - +0.3
2,874,132 - -0.5
2,874,132 - -0.2
2,874,132 - +0.3
2,874,132 - +0.2
2,874,132 - -1.9
2,874,132 - -1.1
2,874,151 + -0.3
2,874,151 + -0.4
2,874,151 + -0.6
2,874,152 - +0.0
2,874,152 - -0.3
2,874,308 + +0.1
2,874,309 - -0.5
2,874,309 - -0.1
2,874,309 - -0.4
2,874,309 - +0.9
2,874,309 - +1.2
2,874,309 - +0.4
2,874,347 + -0.4
2,874,348 - -0.7
2,874,348 - -0.5
2,874,348 - -0.1
2,874,390 - OH686_13710 0.10 +0.6
2,874,422 + OH686_13710 0.11 -0.1
2,874,452 + OH686_13710 0.13 -0.5
2,874,452 + OH686_13710 0.13 -1.1
2,874,452 + OH686_13710 0.13 -0.5
2,874,452 + OH686_13710 0.13 -1.1
2,874,452 + OH686_13710 0.13 +0.3
2,874,452 + OH686_13710 0.13 +0.0
2,874,452 + OH686_13710 0.13 -0.4
2,874,452 + OH686_13710 0.13 -0.1
2,874,452 + OH686_13710 0.13 +0.0
2,874,453 - OH686_13710 0.13 -0.7
2,874,453 - OH686_13710 0.13 +1.2
2,874,453 - OH686_13710 0.13 +0.1
2,874,453 - OH686_13710 0.13 -0.4
2,874,453 - OH686_13710 0.13 -0.4
2,874,453 - OH686_13710 0.13 -0.0
2,874,453 - OH686_13710 0.13 +0.3
2,874,453 - OH686_13710 0.13 +0.2
2,874,453 - OH686_13710 0.13 -0.1
2,874,453 - OH686_13710 0.13 +0.2
2,874,455 + OH686_13710 0.13 -0.8
2,874,455 + OH686_13710 0.13 -0.4
2,874,455 + OH686_13710 0.13 -0.3
2,874,455 + OH686_13710 0.13 -0.3
2,874,455 + OH686_13710 0.13 -0.7
2,874,455 + OH686_13710 0.13 -0.1
2,874,456 - OH686_13710 0.13 +0.3
2,874,456 - OH686_13710 0.13 -1.5
2,874,456 - OH686_13710 0.13 -0.1
2,874,456 - OH686_13710 0.13 -0.3
2,874,456 - OH686_13710 0.13 +0.5
2,874,473 + OH686_13710 0.13 -0.1
2,874,473 + OH686_13710 0.13 +0.1
2,874,473 + OH686_13710 0.13 +0.5
2,874,473 + OH686_13710 0.13 -0.5
2,874,473 + OH686_13710 0.13 +0.1
2,874,473 + OH686_13710 0.13 -0.5
2,874,473 + OH686_13710 0.13 +0.6
2,874,473 + OH686_13710 0.13 -0.7
2,874,473 + OH686_13710 0.13 +0.8
2,874,474 - OH686_13710 0.13 +0.1
2,874,474 - OH686_13710 0.13 -0.1
2,874,474 - OH686_13710 0.13 -1.4
2,874,491 + OH686_13710 0.14 -0.1
2,874,491 + OH686_13710 0.14 -0.8
2,874,492 - OH686_13710 0.14 -0.3
2,874,551 + OH686_13710 0.16 -0.2
2,874,551 + OH686_13710 0.16 -0.5
2,874,551 + OH686_13710 0.16 +0.6
2,874,551 + OH686_13710 0.16 -0.5
2,874,551 + OH686_13710 0.16 +2.3
2,874,551 + OH686_13710 0.16 -1.4
2,874,551 + OH686_13710 0.16 -1.0
2,874,551 + OH686_13710 0.16 +0.4
2,874,551 + OH686_13710 0.16 -0.9
2,874,551 + OH686_13710 0.16 -0.2
2,874,551 + OH686_13710 0.16 +0.0
2,874,551 + OH686_13710 0.16 -0.7
2,874,551 + OH686_13710 0.16 -0.4
2,874,552 - OH686_13710 0.16 -0.0
2,874,552 - OH686_13710 0.16 +0.0
2,874,552 - OH686_13710 0.16 -1.0
2,874,552 - OH686_13710 0.16 +0.2
2,874,662 + OH686_13710 0.21 +0.4
2,874,662 + OH686_13710 0.21 +0.1
2,874,662 + OH686_13710 0.21 -1.4
2,874,662 + OH686_13710 0.21 +0.3
2,874,663 - OH686_13710 0.21 -0.8
2,874,663 - OH686_13710 0.21 -0.7
2,874,663 - OH686_13710 0.21 +1.1
2,874,663 - OH686_13710 0.21 -0.5
2,874,710 + OH686_13710 0.23 -0.2
2,874,717 - OH686_13710 0.23 +0.1
2,874,770 + OH686_13710 0.25 -0.1
2,874,770 + OH686_13710 0.25 +0.5
2,874,770 + OH686_13710 0.25 -0.7
2,874,770 + OH686_13710 0.25 +0.4
2,874,771 - OH686_13710 0.25 -1.2
2,874,771 - OH686_13710 0.25 +0.7
2,874,771 - OH686_13710 0.25 +0.8
2,874,771 - OH686_13710 0.25 -0.1
2,874,887 + OH686_13710 0.30 -0.9
2,874,887 + OH686_13710 0.30 -0.1
2,874,887 + OH686_13710 0.30 -0.3
2,874,887 + OH686_13710 0.30 +0.4
2,874,887 + OH686_13710 0.30 -0.8
2,874,887 + OH686_13710 0.30 -1.2
2,874,888 - OH686_13710 0.30 +0.7
2,875,005 - OH686_13710 0.34 -0.8
2,875,016 - OH686_13710 0.35 +0.1
2,875,016 - OH686_13710 0.35 +0.7

Or see this region's nucleotide sequence