Strain Fitness in Pseudomonas sp. S08-1 around OH686_07835

Experiment: acetate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOH686_07825 and OH686_07830 are separated by 49 nucleotidesOH686_07830 and OH686_07835 are separated by 16 nucleotidesOH686_07835 and OH686_07840 are separated by 234 nucleotides OH686_07825: OH686_07825 - valine--tRNA ligase, at 1,600,295 to 1,603,126 _07825 OH686_07830: OH686_07830 - hypothetical protein, at 1,603,176 to 1,603,634 _07830 OH686_07835: OH686_07835 - hypothetical protein, at 1,603,651 to 1,603,947 _07835 OH686_07840: OH686_07840 - COG1683: Uncharacterized conserved protein /Hypothetical protein YbgA, at 1,604,182 to 1,605,132 _07840 Position (kb) 1603 1604Strain fitness (log2 ratio) -2 -1 0 1at 1603.124 kb on + strandat 1603.125 kb on - strandat 1603.125 kb on - strandat 1603.125 kb on - strandat 1603.125 kb on - strandat 1603.125 kb on - strandat 1603.693 kb on + strand, within OH686_07835at 1603.693 kb on + strand, within OH686_07835at 1603.693 kb on + strand, within OH686_07835at 1603.693 kb on + strand, within OH686_07835at 1603.693 kb on + strand, within OH686_07835at 1603.694 kb on - strand, within OH686_07835at 1603.694 kb on - strand, within OH686_07835at 1603.694 kb on - strand, within OH686_07835at 1603.861 kb on + strand, within OH686_07835at 1603.861 kb on + strand, within OH686_07835at 1603.861 kb on + strand, within OH686_07835at 1603.861 kb on + strand, within OH686_07835at 1603.862 kb on - strand, within OH686_07835at 1603.862 kb on - strand, within OH686_07835at 1603.862 kb on - strand, within OH686_07835at 1603.868 kb on + strand, within OH686_07835at 1604.021 kb on + strandat 1604.022 kb on - strandat 1604.022 kb on - strandat 1604.042 kb on - strandat 1604.051 kb on + strandat 1604.066 kb on + strandat 1604.066 kb on + strandat 1604.067 kb on - strandat 1604.067 kb on - strandat 1604.067 kb on - strandat 1604.067 kb on - strandat 1604.067 kb on - strandat 1604.107 kb on - strandat 1604.139 kb on + strandat 1604.140 kb on - strandat 1604.140 kb on - strandat 1604.140 kb on - strandat 1604.158 kb on - strandat 1604.239 kb on + strandat 1604.239 kb on + strandat 1604.239 kb on + strandat 1604.239 kb on + strandat 1604.239 kb on + strandat 1604.240 kb on - strandat 1604.240 kb on - strandat 1604.240 kb on - strandat 1604.531 kb on - strand, within OH686_07840at 1604.755 kb on + strand, within OH686_07840at 1604.755 kb on + strand, within OH686_07840at 1604.755 kb on + strand, within OH686_07840at 1604.755 kb on + strand, within OH686_07840at 1604.755 kb on + strand, within OH686_07840at 1604.755 kb on + strand, within OH686_07840at 1604.756 kb on - strand, within OH686_07840at 1604.756 kb on - strand, within OH686_07840at 1604.756 kb on - strand, within OH686_07840at 1604.756 kb on - strand, within OH686_07840at 1604.756 kb on - strand, within OH686_07840at 1604.756 kb on - strand, within OH686_07840at 1604.756 kb on - strand, within OH686_07840at 1604.756 kb on - strand, within OH686_07840at 1604.756 kb on - strand, within OH686_07840at 1604.756 kb on - strand, within OH686_07840at 1604.756 kb on - strand, within OH686_07840at 1604.756 kb on - strand, within OH686_07840at 1604.756 kb on - strand, within OH686_07840at 1604.852 kb on - strand, within OH686_07840

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
remove
1,603,124 + -0.5
1,603,125 - -1.7
1,603,125 - -0.2
1,603,125 - -0.7
1,603,125 - -0.4
1,603,125 - -1.7
1,603,693 + OH686_07835 0.14 +0.1
1,603,693 + OH686_07835 0.14 +0.0
1,603,693 + OH686_07835 0.14 +1.4
1,603,693 + OH686_07835 0.14 +0.5
1,603,693 + OH686_07835 0.14 -0.5
1,603,694 - OH686_07835 0.14 -0.6
1,603,694 - OH686_07835 0.14 +1.0
1,603,694 - OH686_07835 0.14 +0.2
1,603,861 + OH686_07835 0.71 -0.1
1,603,861 + OH686_07835 0.71 +0.5
1,603,861 + OH686_07835 0.71 -1.4
1,603,861 + OH686_07835 0.71 +0.1
1,603,862 - OH686_07835 0.71 -0.5
1,603,862 - OH686_07835 0.71 -0.4
1,603,862 - OH686_07835 0.71 -0.3
1,603,868 + OH686_07835 0.73 -0.4
1,604,021 + -0.8
1,604,022 - -0.4
1,604,022 - -0.4
1,604,042 - -0.2
1,604,051 + -0.0
1,604,066 + +0.2
1,604,066 + -0.2
1,604,067 - -0.6
1,604,067 - -0.6
1,604,067 - -0.0
1,604,067 - +0.1
1,604,067 - +0.6
1,604,107 - +0.7
1,604,139 + -0.5
1,604,140 - -0.6
1,604,140 - -0.4
1,604,140 - -0.7
1,604,158 - +0.5
1,604,239 + +0.0
1,604,239 + -0.5
1,604,239 + -1.3
1,604,239 + +0.3
1,604,239 + -0.1
1,604,240 - -1.8
1,604,240 - -0.0
1,604,240 - -1.7
1,604,531 - OH686_07840 0.37 -0.2
1,604,755 + OH686_07840 0.60 -0.5
1,604,755 + OH686_07840 0.60 -0.2
1,604,755 + OH686_07840 0.60 -0.1
1,604,755 + OH686_07840 0.60 +0.1
1,604,755 + OH686_07840 0.60 -0.2
1,604,755 + OH686_07840 0.60 -0.4
1,604,756 - OH686_07840 0.60 -0.4
1,604,756 - OH686_07840 0.60 -0.2
1,604,756 - OH686_07840 0.60 -0.4
1,604,756 - OH686_07840 0.60 +0.1
1,604,756 - OH686_07840 0.60 +1.1
1,604,756 - OH686_07840 0.60 -0.5
1,604,756 - OH686_07840 0.60 -0.5
1,604,756 - OH686_07840 0.60 -0.2
1,604,756 - OH686_07840 0.60 +1.3
1,604,756 - OH686_07840 0.60 +0.2
1,604,756 - OH686_07840 0.60 -0.6
1,604,756 - OH686_07840 0.60 -0.3
1,604,756 - OH686_07840 0.60 -0.5
1,604,852 - OH686_07840 0.70 -0.1

Or see this region's nucleotide sequence