Strain Fitness in Pseudomonas sp. S08-1 around OH686_04755

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_04745 and OH686_04750 overlap by 4 nucleotidesOH686_04750 and OH686_04755 overlap by 1 nucleotidesOH686_04755 and OH686_04760 are separated by 210 nucleotidesOH686_04760 and OH686_04765 are separated by 139 nucleotides OH686_04745: OH686_04745 - Na(+) H(+) antiporter subunit D, at 977,527 to 979,014 _04745 OH686_04750: OH686_04750 - Na(+) H(+) antiporter subunit C, at 979,011 to 979,358 _04750 OH686_04755: OH686_04755 - Na(+) H(+) antiporter subunit A / Na(+) H(+) antiporter subunit B, at 979,358 to 982,159 _04755 OH686_04760: OH686_04760 - hypothetical protein, at 982,370 to 982,864 _04760 OH686_04765: OH686_04765 - hypothetical protein, at 983,004 to 983,324 _04765 Position (kb) 979 980 981 982 983Strain fitness (log2 ratio) -3 -2 -1 0 1at 978.537 kb on - strand, within OH686_04745at 978.581 kb on - strand, within OH686_04745at 978.581 kb on - strand, within OH686_04745at 979.609 kb on - strandat 979.609 kb on - strandat 982.207 kb on + strandat 982.207 kb on + strandat 982.207 kb on + strandat 982.207 kb on + strandat 982.207 kb on + strandat 982.207 kb on + strandat 982.207 kb on + strandat 982.208 kb on - strandat 982.208 kb on - strandat 982.208 kb on - strandat 982.208 kb on - strandat 982.208 kb on - strandat 982.208 kb on - strandat 982.208 kb on - strandat 982.334 kb on + strandat 982.334 kb on + strandat 982.334 kb on + strandat 982.334 kb on + strandat 982.334 kb on + strandat 982.334 kb on + strandat 982.335 kb on - strandat 982.335 kb on - strandat 982.335 kb on - strandat 982.335 kb on - strandat 982.335 kb on - strandat 982.335 kb on - strandat 982.335 kb on - strandat 982.335 kb on - strandat 982.343 kb on + strandat 982.343 kb on + strandat 982.343 kb on + strandat 982.344 kb on - strandat 982.344 kb on - strandat 982.344 kb on - strandat 982.536 kb on + strand, within OH686_04760at 982.536 kb on + strand, within OH686_04760at 982.536 kb on + strand, within OH686_04760at 982.536 kb on + strand, within OH686_04760at 982.536 kb on + strand, within OH686_04760at 982.536 kb on + strand, within OH686_04760at 982.536 kb on + strand, within OH686_04760at 982.537 kb on - strand, within OH686_04760at 982.537 kb on - strand, within OH686_04760at 982.537 kb on - strand, within OH686_04760at 982.557 kb on + strand, within OH686_04760at 982.557 kb on + strand, within OH686_04760at 982.557 kb on + strand, within OH686_04760at 982.557 kb on + strand, within OH686_04760at 982.558 kb on - strand, within OH686_04760at 982.558 kb on - strand, within OH686_04760at 982.558 kb on - strand, within OH686_04760at 982.616 kb on + strand, within OH686_04760at 982.616 kb on + strand, within OH686_04760at 982.689 kb on + strand, within OH686_04760at 982.689 kb on + strand, within OH686_04760at 982.689 kb on + strand, within OH686_04760at 982.689 kb on + strand, within OH686_04760at 982.689 kb on + strand, within OH686_04760at 982.690 kb on - strand, within OH686_04760at 982.690 kb on - strand, within OH686_04760at 982.690 kb on - strand, within OH686_04760at 982.690 kb on - strand, within OH686_04760at 982.690 kb on - strand, within OH686_04760at 982.690 kb on - strand, within OH686_04760at 982.690 kb on - strand, within OH686_04760at 982.690 kb on - strand, within OH686_04760at 982.694 kb on + strand, within OH686_04760at 982.694 kb on + strand, within OH686_04760at 982.694 kb on + strand, within OH686_04760at 982.694 kb on + strand, within OH686_04760at 982.694 kb on + strand, within OH686_04760at 982.695 kb on - strand, within OH686_04760at 982.695 kb on - strand, within OH686_04760at 982.695 kb on - strand, within OH686_04760at 982.695 kb on - strand, within OH686_04760at 982.695 kb on - strand, within OH686_04760at 982.695 kb on - strand, within OH686_04760at 982.695 kb on - strand, within OH686_04760at 982.713 kb on + strand, within OH686_04760at 982.714 kb on - strand, within OH686_04760at 982.714 kb on - strand, within OH686_04760at 982.722 kb on + strand, within OH686_04760at 982.722 kb on + strand, within OH686_04760at 982.722 kb on + strand, within OH686_04760at 982.722 kb on + strand, within OH686_04760at 982.722 kb on + strand, within OH686_04760at 982.722 kb on + strand, within OH686_04760at 982.723 kb on - strand, within OH686_04760at 982.723 kb on - strand, within OH686_04760at 982.723 kb on - strand, within OH686_04760at 982.723 kb on - strand, within OH686_04760at 982.723 kb on - strand, within OH686_04760at 982.723 kb on - strand, within OH686_04760at 982.723 kb on - strand, within OH686_04760at 982.840 kb on + strandat 982.841 kb on - strandat 982.841 kb on - strandat 982.841 kb on - strandat 982.927 kb on - strandat 982.971 kb on + strandat 982.981 kb on + strandat 982.981 kb on + strandat 982.981 kb on + strandat 982.981 kb on + strandat 982.982 kb on - strandat 982.982 kb on - strandat 982.982 kb on - strandat 982.982 kb on - strandat 982.982 kb on - strandat 983.050 kb on + strand, within OH686_04765at 983.050 kb on + strand, within OH686_04765at 983.050 kb on + strand, within OH686_04765at 983.050 kb on + strand, within OH686_04765at 983.050 kb on + strand, within OH686_04765at 983.050 kb on + strand, within OH686_04765at 983.050 kb on + strand, within OH686_04765at 983.050 kb on + strand, within OH686_04765at 983.051 kb on - strand, within OH686_04765at 983.051 kb on - strand, within OH686_04765at 983.051 kb on - strand, within OH686_04765at 983.051 kb on - strand, within OH686_04765at 983.051 kb on - strand, within OH686_04765at 983.071 kb on - strand, within OH686_04765at 983.095 kb on + strand, within OH686_04765at 983.095 kb on + strand, within OH686_04765at 983.095 kb on + strand, within OH686_04765at 983.096 kb on - strand, within OH686_04765at 983.120 kb on + strand, within OH686_04765at 983.120 kb on + strand, within OH686_04765at 983.120 kb on + strand, within OH686_04765at 983.121 kb on - strand, within OH686_04765at 983.121 kb on - strand, within OH686_04765at 983.121 kb on - strand, within OH686_04765at 983.143 kb on + strand, within OH686_04765at 983.143 kb on + strand, within OH686_04765at 983.143 kb on + strand, within OH686_04765

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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978,537 - OH686_04745 0.68 +0.2
978,581 - OH686_04745 0.71 -0.0
978,581 - OH686_04745 0.71 -0.7
979,609 - -0.3
979,609 - -0.8
982,207 + -0.8
982,207 + -0.4
982,207 + -0.6
982,207 + +1.1
982,207 + +0.2
982,207 + +0.3
982,207 + -0.4
982,208 - -0.7
982,208 - +0.0
982,208 - +1.0
982,208 - -1.1
982,208 - -0.7
982,208 - -1.0
982,208 - -1.0
982,334 + -1.1
982,334 + -0.9
982,334 + -1.0
982,334 + +0.2
982,334 + +0.5
982,334 + +0.5
982,335 - +0.5
982,335 - -0.5
982,335 - +0.6
982,335 - +0.0
982,335 - +0.1
982,335 - +0.4
982,335 - -1.0
982,335 - -0.1
982,343 + -0.2
982,343 + -0.9
982,343 + -1.1
982,344 - -0.4
982,344 - +0.2
982,344 - +1.1
982,536 + OH686_04760 0.34 -0.3
982,536 + OH686_04760 0.34 +0.4
982,536 + OH686_04760 0.34 +0.6
982,536 + OH686_04760 0.34 -1.4
982,536 + OH686_04760 0.34 -0.8
982,536 + OH686_04760 0.34 +0.2
982,536 + OH686_04760 0.34 -0.9
982,537 - OH686_04760 0.34 +0.3
982,537 - OH686_04760 0.34 -0.4
982,537 - OH686_04760 0.34 +0.2
982,557 + OH686_04760 0.38 +0.7
982,557 + OH686_04760 0.38 -0.4
982,557 + OH686_04760 0.38 -0.1
982,557 + OH686_04760 0.38 -0.5
982,558 - OH686_04760 0.38 -0.2
982,558 - OH686_04760 0.38 +1.1
982,558 - OH686_04760 0.38 +0.2
982,616 + OH686_04760 0.50 +0.5
982,616 + OH686_04760 0.50 +0.5
982,689 + OH686_04760 0.64 -0.2
982,689 + OH686_04760 0.64 -0.9
982,689 + OH686_04760 0.64 -0.2
982,689 + OH686_04760 0.64 -0.0
982,689 + OH686_04760 0.64 +0.3
982,690 - OH686_04760 0.65 -0.5
982,690 - OH686_04760 0.65 -1.5
982,690 - OH686_04760 0.65 +0.0
982,690 - OH686_04760 0.65 -0.7
982,690 - OH686_04760 0.65 +0.0
982,690 - OH686_04760 0.65 -0.4
982,690 - OH686_04760 0.65 +0.0
982,690 - OH686_04760 0.65 -0.3
982,694 + OH686_04760 0.65 +0.7
982,694 + OH686_04760 0.65 -0.5
982,694 + OH686_04760 0.65 +0.1
982,694 + OH686_04760 0.65 +0.0
982,694 + OH686_04760 0.65 -1.3
982,695 - OH686_04760 0.66 -1.2
982,695 - OH686_04760 0.66 -0.2
982,695 - OH686_04760 0.66 +0.9
982,695 - OH686_04760 0.66 +0.6
982,695 - OH686_04760 0.66 -0.4
982,695 - OH686_04760 0.66 -0.9
982,695 - OH686_04760 0.66 +1.2
982,713 + OH686_04760 0.69 -2.9
982,714 - OH686_04760 0.69 -0.3
982,714 - OH686_04760 0.69 +0.1
982,722 + OH686_04760 0.71 -0.6
982,722 + OH686_04760 0.71 +0.2
982,722 + OH686_04760 0.71 -0.5
982,722 + OH686_04760 0.71 +0.2
982,722 + OH686_04760 0.71 -0.0
982,722 + OH686_04760 0.71 -0.7
982,723 - OH686_04760 0.71 +0.1
982,723 - OH686_04760 0.71 -1.3
982,723 - OH686_04760 0.71 +0.6
982,723 - OH686_04760 0.71 +0.1
982,723 - OH686_04760 0.71 -0.9
982,723 - OH686_04760 0.71 -0.6
982,723 - OH686_04760 0.71 +1.6
982,840 + -0.1
982,841 - +0.5
982,841 - -0.3
982,841 - -1.0
982,927 - -0.3
982,971 + -0.2
982,981 + +0.2
982,981 + -0.6
982,981 + -0.3
982,981 + +0.8
982,982 - +0.1
982,982 - +0.8
982,982 - -0.1
982,982 - -0.6
982,982 - +0.0
983,050 + OH686_04765 0.14 +0.2
983,050 + OH686_04765 0.14 +0.6
983,050 + OH686_04765 0.14 -0.2
983,050 + OH686_04765 0.14 -0.6
983,050 + OH686_04765 0.14 -0.2
983,050 + OH686_04765 0.14 +0.7
983,050 + OH686_04765 0.14 -0.5
983,050 + OH686_04765 0.14 -0.2
983,051 - OH686_04765 0.15 -0.6
983,051 - OH686_04765 0.15 -1.5
983,051 - OH686_04765 0.15 -0.3
983,051 - OH686_04765 0.15 -0.9
983,051 - OH686_04765 0.15 +0.2
983,071 - OH686_04765 0.21 +0.3
983,095 + OH686_04765 0.28 +0.3
983,095 + OH686_04765 0.28 +0.5
983,095 + OH686_04765 0.28 +1.1
983,096 - OH686_04765 0.29 +0.8
983,120 + OH686_04765 0.36 -0.6
983,120 + OH686_04765 0.36 -1.2
983,120 + OH686_04765 0.36 -0.4
983,121 - OH686_04765 0.36 -0.4
983,121 - OH686_04765 0.36 -0.5
983,121 - OH686_04765 0.36 -0.3
983,143 + OH686_04765 0.43 -0.7
983,143 + OH686_04765 0.43 +0.5
983,143 + OH686_04765 0.43 +0.6

Or see this region's nucleotide sequence