Strain Fitness in Pseudomonas sp. S08-1 around OH686_04675

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_04665 and OH686_04670 are separated by 9 nucleotidesOH686_04670 and OH686_04675 overlap by 4 nucleotidesOH686_04675 and OH686_04680 overlap by 14 nucleotidesOH686_04680 and OH686_04685 are separated by 9 nucleotides OH686_04665: OH686_04665 - Two-component system response regulator QseB, at 965,140 to 965,802 _04665 OH686_04670: OH686_04670 - hypothetical protein, at 965,812 to 966,456 _04670 OH686_04675: OH686_04675 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 966,453 to 967,250 _04675 OH686_04680: OH686_04680 - Acyl-CoA long-chain enzyme transcriptional related heme family, at 967,237 to 967,917 _04680 OH686_04685: OH686_04685 - Long-chain-fatty-acid--CoA ligase , at 967,927 to 969,390 _04685 Position (kb) 966 967 968Strain fitness (log2 ratio) -2 -1 0 1at 965.459 kb on - strand, within OH686_04665at 965.510 kb on + strand, within OH686_04665at 965.510 kb on + strand, within OH686_04665at 965.511 kb on - strand, within OH686_04665at 965.511 kb on - strand, within OH686_04665at 965.511 kb on - strand, within OH686_04665at 965.730 kb on - strand, within OH686_04665at 965.942 kb on + strand, within OH686_04670at 965.942 kb on + strand, within OH686_04670at 965.942 kb on + strand, within OH686_04670at 965.943 kb on - strand, within OH686_04670at 965.943 kb on - strand, within OH686_04670at 965.978 kb on + strand, within OH686_04670at 965.978 kb on + strand, within OH686_04670at 965.978 kb on + strand, within OH686_04670at 965.978 kb on + strand, within OH686_04670at 965.978 kb on + strand, within OH686_04670at 965.979 kb on - strand, within OH686_04670at 965.979 kb on - strand, within OH686_04670at 965.979 kb on - strand, within OH686_04670at 965.979 kb on - strand, within OH686_04670at 965.979 kb on - strand, within OH686_04670at 965.979 kb on - strand, within OH686_04670at 966.003 kb on + strand, within OH686_04670at 966.083 kb on + strand, within OH686_04670at 966.084 kb on - strand, within OH686_04670at 966.084 kb on - strand, within OH686_04670at 966.084 kb on - strand, within OH686_04670at 966.084 kb on - strand, within OH686_04670at 966.084 kb on - strand, within OH686_04670at 966.084 kb on - strand, within OH686_04670at 966.084 kb on - strand, within OH686_04670at 966.084 kb on - strand, within OH686_04670at 966.084 kb on - strand, within OH686_04670at 966.104 kb on + strand, within OH686_04670at 966.104 kb on + strand, within OH686_04670at 966.104 kb on + strand, within OH686_04670at 966.104 kb on + strand, within OH686_04670at 966.105 kb on - strand, within OH686_04670at 966.105 kb on - strand, within OH686_04670at 966.105 kb on - strand, within OH686_04670at 966.156 kb on - strand, within OH686_04670at 966.156 kb on - strand, within OH686_04670at 966.156 kb on - strand, within OH686_04670at 966.156 kb on - strand, within OH686_04670at 966.338 kb on + strand, within OH686_04670at 966.338 kb on + strand, within OH686_04670at 966.338 kb on + strand, within OH686_04670at 966.365 kb on - strand, within OH686_04670at 966.577 kb on + strand, within OH686_04675at 966.577 kb on + strand, within OH686_04675at 966.612 kb on + strand, within OH686_04675at 966.612 kb on + strand, within OH686_04675at 966.613 kb on - strand, within OH686_04675at 966.721 kb on + strand, within OH686_04675at 966.721 kb on + strand, within OH686_04675at 966.721 kb on + strand, within OH686_04675at 966.722 kb on - strand, within OH686_04675at 966.722 kb on - strand, within OH686_04675at 966.722 kb on - strand, within OH686_04675at 966.802 kb on + strand, within OH686_04675at 966.802 kb on + strand, within OH686_04675at 966.802 kb on + strand, within OH686_04675at 966.802 kb on + strand, within OH686_04675at 966.802 kb on + strand, within OH686_04675at 966.802 kb on + strand, within OH686_04675at 966.803 kb on - strand, within OH686_04675at 966.835 kb on + strand, within OH686_04675at 966.835 kb on + strand, within OH686_04675at 966.835 kb on + strand, within OH686_04675at 966.835 kb on + strand, within OH686_04675at 966.835 kb on + strand, within OH686_04675at 966.835 kb on + strand, within OH686_04675at 966.835 kb on + strand, within OH686_04675at 966.835 kb on + strand, within OH686_04675at 966.835 kb on + strand, within OH686_04675at 966.835 kb on + strand, within OH686_04675at 966.836 kb on - strand, within OH686_04675at 966.836 kb on - strand, within OH686_04675at 966.836 kb on - strand, within OH686_04675at 967.092 kb on + strand, within OH686_04675at 967.093 kb on - strand, within OH686_04675at 967.093 kb on - strand, within OH686_04675at 967.279 kb on + strandat 967.301 kb on + strandat 967.302 kb on - strandat 967.311 kb on - strand, within OH686_04680at 967.311 kb on - strand, within OH686_04680at 967.427 kb on + strand, within OH686_04680at 967.427 kb on + strand, within OH686_04680at 967.427 kb on + strand, within OH686_04680at 967.427 kb on + strand, within OH686_04680at 967.427 kb on + strand, within OH686_04680at 967.427 kb on + strand, within OH686_04680at 967.427 kb on + strand, within OH686_04680at 967.427 kb on + strand, within OH686_04680at 967.428 kb on - strand, within OH686_04680at 967.428 kb on - strand, within OH686_04680at 967.428 kb on - strand, within OH686_04680at 967.428 kb on - strand, within OH686_04680at 967.428 kb on - strand, within OH686_04680at 967.428 kb on - strand, within OH686_04680at 967.565 kb on + strand, within OH686_04680at 967.565 kb on + strand, within OH686_04680at 967.565 kb on + strand, within OH686_04680at 967.565 kb on + strand, within OH686_04680at 967.565 kb on + strand, within OH686_04680at 967.565 kb on + strand, within OH686_04680at 967.566 kb on - strand, within OH686_04680at 967.566 kb on - strand, within OH686_04680at 967.566 kb on - strand, within OH686_04680at 967.566 kb on - strand, within OH686_04680at 967.566 kb on - strand, within OH686_04680at 967.571 kb on + strand, within OH686_04680at 967.571 kb on + strand, within OH686_04680at 967.571 kb on + strand, within OH686_04680at 967.571 kb on + strand, within OH686_04680at 967.571 kb on + strand, within OH686_04680at 967.571 kb on + strand, within OH686_04680at 967.571 kb on + strand, within OH686_04680at 967.571 kb on + strand, within OH686_04680at 967.571 kb on + strand, within OH686_04680at 967.571 kb on + strand, within OH686_04680at 967.571 kb on + strand, within OH686_04680at 967.571 kb on + strand, within OH686_04680at 967.571 kb on + strand, within OH686_04680at 967.571 kb on + strand, within OH686_04680at 967.571 kb on + strand, within OH686_04680at 967.571 kb on + strand, within OH686_04680at 967.571 kb on + strand, within OH686_04680at 967.571 kb on + strand, within OH686_04680at 967.572 kb on - strand, within OH686_04680at 967.572 kb on - strand, within OH686_04680at 967.572 kb on - strand, within OH686_04680at 967.572 kb on - strand, within OH686_04680at 967.572 kb on - strand, within OH686_04680at 967.572 kb on - strand, within OH686_04680at 967.572 kb on - strand, within OH686_04680at 967.572 kb on - strand, within OH686_04680at 967.572 kb on - strand, within OH686_04680at 967.572 kb on - strand, within OH686_04680at 967.572 kb on - strand, within OH686_04680at 967.572 kb on - strand, within OH686_04680at 967.572 kb on - strand, within OH686_04680at 967.676 kb on + strand, within OH686_04680at 967.677 kb on - strand, within OH686_04680at 967.691 kb on + strand, within OH686_04680at 967.692 kb on - strand, within OH686_04680at 967.782 kb on - strand, within OH686_04680at 967.782 kb on - strand, within OH686_04680at 967.782 kb on - strand, within OH686_04680at 967.782 kb on - strand, within OH686_04680at 967.784 kb on + strand, within OH686_04680at 967.784 kb on + strand, within OH686_04680at 967.785 kb on - strand, within OH686_04680at 967.785 kb on - strand, within OH686_04680at 967.785 kb on - strand, within OH686_04680at 967.785 kb on - strand, within OH686_04680at 967.785 kb on - strand, within OH686_04680at 967.785 kb on - strand, within OH686_04680at 967.785 kb on - strand, within OH686_04680at 967.808 kb on + strand, within OH686_04680at 967.808 kb on + strand, within OH686_04680at 967.808 kb on + strand, within OH686_04680at 967.808 kb on + strand, within OH686_04680at 967.808 kb on + strand, within OH686_04680at 967.808 kb on + strand, within OH686_04680at 967.808 kb on + strand, within OH686_04680at 967.808 kb on + strand, within OH686_04680at 967.809 kb on - strand, within OH686_04680at 967.809 kb on - strand, within OH686_04680at 967.809 kb on - strand, within OH686_04680at 967.862 kb on + strandat 967.863 kb on - strandat 967.923 kb on + strandat 967.923 kb on + strandat 967.923 kb on + strandat 967.923 kb on + strandat 967.923 kb on + strandat 967.923 kb on + strandat 967.924 kb on - strandat 967.924 kb on - strandat 967.924 kb on - strandat 967.924 kb on - strandat 967.924 kb on - strandat 967.986 kb on + strandat 967.986 kb on + strandat 967.986 kb on + strandat 967.987 kb on - strandat 968.034 kb on + strandat 968.035 kb on - strandat 968.035 kb on - strandat 968.067 kb on - strandat 968.095 kb on + strand, within OH686_04685at 968.177 kb on + strand, within OH686_04685at 968.178 kb on - strand, within OH686_04685

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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965,459 - OH686_04665 0.48 +0.0
965,510 + OH686_04665 0.56 -0.2
965,510 + OH686_04665 0.56 +0.7
965,511 - OH686_04665 0.56 +0.2
965,511 - OH686_04665 0.56 +1.1
965,511 - OH686_04665 0.56 +0.5
965,730 - OH686_04665 0.89 +0.8
965,942 + OH686_04670 0.20 -1.6
965,942 + OH686_04670 0.20 +0.1
965,942 + OH686_04670 0.20 +0.8
965,943 - OH686_04670 0.20 +0.4
965,943 - OH686_04670 0.20 -0.1
965,978 + OH686_04670 0.26 +0.1
965,978 + OH686_04670 0.26 -1.2
965,978 + OH686_04670 0.26 -0.6
965,978 + OH686_04670 0.26 +0.2
965,978 + OH686_04670 0.26 -0.2
965,979 - OH686_04670 0.26 -0.5
965,979 - OH686_04670 0.26 +0.5
965,979 - OH686_04670 0.26 -0.5
965,979 - OH686_04670 0.26 +0.0
965,979 - OH686_04670 0.26 +0.4
965,979 - OH686_04670 0.26 -0.3
966,003 + OH686_04670 0.30 +0.6
966,083 + OH686_04670 0.42 +0.7
966,084 - OH686_04670 0.42 -0.2
966,084 - OH686_04670 0.42 -0.5
966,084 - OH686_04670 0.42 +0.2
966,084 - OH686_04670 0.42 +0.1
966,084 - OH686_04670 0.42 -0.5
966,084 - OH686_04670 0.42 +0.1
966,084 - OH686_04670 0.42 +0.5
966,084 - OH686_04670 0.42 +0.0
966,084 - OH686_04670 0.42 -0.2
966,104 + OH686_04670 0.45 +0.2
966,104 + OH686_04670 0.45 +0.3
966,104 + OH686_04670 0.45 +0.8
966,104 + OH686_04670 0.45 +0.3
966,105 - OH686_04670 0.45 -0.0
966,105 - OH686_04670 0.45 -0.2
966,105 - OH686_04670 0.45 -0.1
966,156 - OH686_04670 0.53 -0.9
966,156 - OH686_04670 0.53 +0.2
966,156 - OH686_04670 0.53 +0.2
966,156 - OH686_04670 0.53 -0.7
966,338 + OH686_04670 0.82 -0.5
966,338 + OH686_04670 0.82 -1.5
966,338 + OH686_04670 0.82 -0.8
966,365 - OH686_04670 0.86 +0.4
966,577 + OH686_04675 0.16 -0.4
966,577 + OH686_04675 0.16 -1.6
966,612 + OH686_04675 0.20 -1.2
966,612 + OH686_04675 0.20 -0.2
966,613 - OH686_04675 0.20 +0.3
966,721 + OH686_04675 0.34 +0.3
966,721 + OH686_04675 0.34 -0.6
966,721 + OH686_04675 0.34 +1.0
966,722 - OH686_04675 0.34 -0.6
966,722 - OH686_04675 0.34 -0.6
966,722 - OH686_04675 0.34 -0.3
966,802 + OH686_04675 0.44 +0.1
966,802 + OH686_04675 0.44 +1.1
966,802 + OH686_04675 0.44 +0.3
966,802 + OH686_04675 0.44 +0.5
966,802 + OH686_04675 0.44 +0.9
966,802 + OH686_04675 0.44 +0.4
966,803 - OH686_04675 0.44 -0.3
966,835 + OH686_04675 0.48 +0.4
966,835 + OH686_04675 0.48 +1.0
966,835 + OH686_04675 0.48 +0.3
966,835 + OH686_04675 0.48 -0.3
966,835 + OH686_04675 0.48 -0.8
966,835 + OH686_04675 0.48 -1.0
966,835 + OH686_04675 0.48 -2.0
966,835 + OH686_04675 0.48 -0.1
966,835 + OH686_04675 0.48 -0.3
966,835 + OH686_04675 0.48 +0.1
966,836 - OH686_04675 0.48 +0.4
966,836 - OH686_04675 0.48 -0.1
966,836 - OH686_04675 0.48 +0.6
967,092 + OH686_04675 0.80 -0.1
967,093 - OH686_04675 0.80 +0.3
967,093 - OH686_04675 0.80 +0.1
967,279 + +0.2
967,301 + -0.9
967,302 - +0.7
967,311 - OH686_04680 0.11 -1.8
967,311 - OH686_04680 0.11 -0.6
967,427 + OH686_04680 0.28 +0.2
967,427 + OH686_04680 0.28 +0.8
967,427 + OH686_04680 0.28 +0.7
967,427 + OH686_04680 0.28 -0.5
967,427 + OH686_04680 0.28 -0.7
967,427 + OH686_04680 0.28 +1.4
967,427 + OH686_04680 0.28 +0.0
967,427 + OH686_04680 0.28 -0.3
967,428 - OH686_04680 0.28 +0.0
967,428 - OH686_04680 0.28 -0.4
967,428 - OH686_04680 0.28 -1.4
967,428 - OH686_04680 0.28 +0.1
967,428 - OH686_04680 0.28 +0.5
967,428 - OH686_04680 0.28 -0.7
967,565 + OH686_04680 0.48 +1.6
967,565 + OH686_04680 0.48 +0.3
967,565 + OH686_04680 0.48 +0.2
967,565 + OH686_04680 0.48 -0.7
967,565 + OH686_04680 0.48 +0.8
967,565 + OH686_04680 0.48 -0.2
967,566 - OH686_04680 0.48 -0.6
967,566 - OH686_04680 0.48 -0.5
967,566 - OH686_04680 0.48 -1.7
967,566 - OH686_04680 0.48 -0.1
967,566 - OH686_04680 0.48 -0.1
967,571 + OH686_04680 0.49 -0.3
967,571 + OH686_04680 0.49 +0.1
967,571 + OH686_04680 0.49 -0.6
967,571 + OH686_04680 0.49 -0.5
967,571 + OH686_04680 0.49 +0.9
967,571 + OH686_04680 0.49 -0.7
967,571 + OH686_04680 0.49 +0.2
967,571 + OH686_04680 0.49 +0.3
967,571 + OH686_04680 0.49 -0.2
967,571 + OH686_04680 0.49 -0.7
967,571 + OH686_04680 0.49 -0.2
967,571 + OH686_04680 0.49 -0.5
967,571 + OH686_04680 0.49 +0.4
967,571 + OH686_04680 0.49 -0.4
967,571 + OH686_04680 0.49 -0.2
967,571 + OH686_04680 0.49 -1.3
967,571 + OH686_04680 0.49 -0.6
967,571 + OH686_04680 0.49 -0.8
967,572 - OH686_04680 0.49 +0.0
967,572 - OH686_04680 0.49 +0.8
967,572 - OH686_04680 0.49 +1.1
967,572 - OH686_04680 0.49 -1.8
967,572 - OH686_04680 0.49 +0.0
967,572 - OH686_04680 0.49 +0.6
967,572 - OH686_04680 0.49 -0.9
967,572 - OH686_04680 0.49 -0.2
967,572 - OH686_04680 0.49 -0.2
967,572 - OH686_04680 0.49 +0.3
967,572 - OH686_04680 0.49 +1.2
967,572 - OH686_04680 0.49 +0.5
967,572 - OH686_04680 0.49 +0.3
967,676 + OH686_04680 0.64 +0.2
967,677 - OH686_04680 0.65 -0.3
967,691 + OH686_04680 0.67 +1.1
967,692 - OH686_04680 0.67 +0.5
967,782 - OH686_04680 0.80 +0.4
967,782 - OH686_04680 0.80 +0.6
967,782 - OH686_04680 0.80 +0.0
967,782 - OH686_04680 0.80 +0.4
967,784 + OH686_04680 0.80 +0.5
967,784 + OH686_04680 0.80 -0.7
967,785 - OH686_04680 0.80 -0.2
967,785 - OH686_04680 0.80 -0.6
967,785 - OH686_04680 0.80 -0.5
967,785 - OH686_04680 0.80 -0.1
967,785 - OH686_04680 0.80 -0.4
967,785 - OH686_04680 0.80 -0.6
967,785 - OH686_04680 0.80 -0.3
967,808 + OH686_04680 0.84 -0.5
967,808 + OH686_04680 0.84 +0.1
967,808 + OH686_04680 0.84 +1.2
967,808 + OH686_04680 0.84 +0.3
967,808 + OH686_04680 0.84 -0.7
967,808 + OH686_04680 0.84 +0.2
967,808 + OH686_04680 0.84 +0.5
967,808 + OH686_04680 0.84 -1.2
967,809 - OH686_04680 0.84 -1.4
967,809 - OH686_04680 0.84 +0.3
967,809 - OH686_04680 0.84 +0.7
967,862 + -0.5
967,863 - -0.4
967,923 + +0.5
967,923 + +0.7
967,923 + +1.0
967,923 + -0.2
967,923 + -0.7
967,923 + +0.5
967,924 - -0.4
967,924 - -0.5
967,924 - +0.8
967,924 - +0.1
967,924 - -0.3
967,986 + +0.4
967,986 + +0.5
967,986 + +0.1
967,987 - -0.6
968,034 + +0.5
968,035 - -0.2
968,035 - -0.3
968,067 - -1.4
968,095 + OH686_04685 0.11 -0.3
968,177 + OH686_04685 0.17 -1.7
968,178 - OH686_04685 0.17 -0.5

Or see this region's nucleotide sequence