Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19685 and PS417_19690 are separated by 18 nucleotides PS417_19690 and PS417_19695 are separated by 155 nucleotides PS417_19695 and PS417_19700 overlap by 4 nucleotides PS417_19700 and PS417_19705 are separated by 106 nucleotides
PS417_19685: PS417_19685 - protein phosphatase, at 4,278,867 to 4,279,655
_19685
PS417_19690: PS417_19690 - histidine kinase, at 4,279,674 to 4,280,060
_19690
PS417_19695: PS417_19695 - flagellar biosynthesis sigma factor, at 4,280,216 to 4,280,956
_19695
PS417_19700: PS417_19700 - cobyrinic acid a,c-diamide synthase, at 4,280,953 to 4,281,786
_19700
PS417_19705: PS417_19705 - flagellar biosynthesis regulator FlhF, at 4,281,893 to 4,283,209
_19705
Position (kb) 4280
4281 Strain fitness (log2 ratio) -2
-1
0
1 at 4279.384 kb on + strand, within PS417_19685 at 4279.384 kb on + strand, within PS417_19685 at 4279.385 kb on - strand, within PS417_19685 at 4279.385 kb on - strand, within PS417_19685 at 4279.385 kb on - strand, within PS417_19685 at 4279.385 kb on - strand, within PS417_19685 at 4279.385 kb on - strand, within PS417_19685 at 4279.385 kb on - strand, within PS417_19685 at 4279.647 kb on - strand at 4279.656 kb on - strand at 4279.747 kb on + strand, within PS417_19690 at 4279.848 kb on + strand, within PS417_19690 at 4279.848 kb on + strand, within PS417_19690 at 4279.848 kb on + strand, within PS417_19690 at 4279.848 kb on + strand, within PS417_19690 at 4279.849 kb on - strand, within PS417_19690 at 4280.080 kb on + strand at 4280.125 kb on + strand at 4280.126 kb on - strand at 4280.126 kb on - strand at 4280.347 kb on - strand, within PS417_19695 at 4280.446 kb on + strand, within PS417_19695 at 4280.446 kb on + strand, within PS417_19695 at 4280.533 kb on + strand, within PS417_19695 at 4280.554 kb on - strand, within PS417_19695 at 4280.736 kb on + strand, within PS417_19695 at 4280.736 kb on + strand, within PS417_19695 at 4280.737 kb on - strand at 4280.737 kb on - strand, within PS417_19695 at 4280.769 kb on + strand, within PS417_19695 at 4280.769 kb on + strand, within PS417_19695 at 4280.770 kb on - strand, within PS417_19695 at 4280.770 kb on - strand, within PS417_19695 at 4280.941 kb on - strand at 4280.956 kb on + strand at 4281.823 kb on - strand at 4281.864 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 4,279,384 + PS417_19685 0.66 +0.8 4,279,384 + PS417_19685 0.66 +0.1 4,279,385 - PS417_19685 0.66 +0.1 4,279,385 - PS417_19685 0.66 -0.1 4,279,385 - PS417_19685 0.66 +0.4 4,279,385 - PS417_19685 0.66 +0.2 4,279,385 - PS417_19685 0.66 +0.6 4,279,385 - PS417_19685 0.66 +0.4 4,279,647 - +0.1 4,279,656 - -0.4 4,279,747 + PS417_19690 0.19 +0.0 4,279,848 + PS417_19690 0.45 -0.8 4,279,848 + PS417_19690 0.45 +0.2 4,279,848 + PS417_19690 0.45 -0.3 4,279,848 + PS417_19690 0.45 -0.1 4,279,849 - PS417_19690 0.45 +0.7 4,280,080 + -0.1 4,280,125 + -0.1 4,280,126 - +0.4 4,280,126 - -0.5 4,280,347 - PS417_19695 0.18 -0.4 4,280,446 + PS417_19695 0.31 +1.2 4,280,446 + PS417_19695 0.31 +0.5 4,280,533 + PS417_19695 0.43 +0.6 4,280,554 - PS417_19695 0.46 -1.8 4,280,736 + PS417_19695 0.70 +0.5 4,280,736 + PS417_19695 0.70 +0.3 4,280,737 - -0.3 4,280,737 - PS417_19695 0.70 +0.4 4,280,769 + PS417_19695 0.75 +0.6 4,280,769 + PS417_19695 0.75 +0.9 4,280,770 - PS417_19695 0.75 +1.2 4,280,770 - PS417_19695 0.75 +0.4 4,280,941 - +0.2 4,280,956 + +0.5 4,281,823 - +0.8 4,281,864 - -1.0
Or see this region's nucleotide sequence