Experiment: m.b. nitrite 30 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4320 and Echvi_4321 are separated by 18 nucleotides Echvi_4321 and Echvi_4322 are separated by 20 nucleotides
Echvi_4320: Echvi_4320 - hypothetical protein, at 5,161,779 to 5,162,708
_4320
Echvi_4321: Echvi_4321 - SusD family., at 5,162,727 to 5,164,466
_4321
Echvi_4322: Echvi_4322 - TonB-linked outer membrane protein, SusC/RagA family, at 5,164,487 to 5,168,005
_4322
Position (kb) 5162
5163
5164
5165 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5161.782 kb on + strand at 5161.783 kb on - strand at 5161.783 kb on - strand at 5161.783 kb on - strand at 5161.804 kb on + strand at 5161.817 kb on + strand at 5161.818 kb on - strand at 5161.819 kb on + strand at 5161.820 kb on - strand at 5161.821 kb on + strand at 5161.867 kb on + strand at 5161.906 kb on + strand, within Echvi_4320 at 5161.934 kb on - strand, within Echvi_4320 at 5161.956 kb on + strand, within Echvi_4320 at 5161.957 kb on - strand, within Echvi_4320 at 5162.086 kb on - strand, within Echvi_4320 at 5162.123 kb on + strand, within Echvi_4320 at 5162.127 kb on - strand, within Echvi_4320 at 5162.165 kb on - strand, within Echvi_4320 at 5162.178 kb on + strand, within Echvi_4320 at 5162.202 kb on + strand, within Echvi_4320 at 5162.223 kb on + strand, within Echvi_4320 at 5162.223 kb on + strand, within Echvi_4320 at 5162.223 kb on + strand, within Echvi_4320 at 5162.223 kb on + strand, within Echvi_4320 at 5162.223 kb on + strand, within Echvi_4320 at 5162.223 kb on + strand, within Echvi_4320 at 5162.224 kb on - strand, within Echvi_4320 at 5162.224 kb on - strand, within Echvi_4320 at 5162.224 kb on - strand, within Echvi_4320 at 5162.224 kb on - strand, within Echvi_4320 at 5162.224 kb on - strand, within Echvi_4320 at 5162.268 kb on + strand, within Echvi_4320 at 5162.269 kb on - strand, within Echvi_4320 at 5162.332 kb on + strand, within Echvi_4320 at 5162.366 kb on - strand, within Echvi_4320 at 5162.376 kb on - strand, within Echvi_4320 at 5162.394 kb on + strand, within Echvi_4320 at 5162.477 kb on - strand, within Echvi_4320 at 5162.486 kb on - strand, within Echvi_4320 at 5162.562 kb on + strand, within Echvi_4320 at 5162.563 kb on - strand, within Echvi_4320 at 5162.563 kb on - strand, within Echvi_4320 at 5162.565 kb on - strand, within Echvi_4320 at 5162.627 kb on + strand at 5162.628 kb on - strand at 5162.646 kb on - strand at 5162.649 kb on + strand at 5162.649 kb on + strand at 5162.650 kb on - strand at 5162.650 kb on - strand at 5162.650 kb on - strand at 5162.694 kb on + strand at 5162.708 kb on + strand at 5162.709 kb on - strand at 5162.709 kb on - strand at 5162.710 kb on + strand at 5162.711 kb on - strand at 5162.718 kb on - strand at 5162.722 kb on - strand at 5162.790 kb on + strand at 5162.790 kb on + strand at 5162.821 kb on - strand at 5162.839 kb on - strand at 5162.840 kb on + strand at 5162.840 kb on + strand at 5162.840 kb on + strand at 5162.840 kb on + strand at 5162.841 kb on - strand at 5162.841 kb on - strand at 5162.841 kb on - strand at 5162.841 kb on - strand at 5162.841 kb on - strand at 5162.862 kb on + strand at 5162.944 kb on + strand, within Echvi_4321 at 5162.945 kb on - strand, within Echvi_4321 at 5163.005 kb on + strand, within Echvi_4321 at 5163.006 kb on - strand, within Echvi_4321 at 5163.006 kb on - strand, within Echvi_4321 at 5163.052 kb on - strand, within Echvi_4321 at 5163.106 kb on - strand, within Echvi_4321 at 5163.106 kb on - strand, within Echvi_4321 at 5163.140 kb on - strand, within Echvi_4321 at 5163.140 kb on - strand, within Echvi_4321 at 5163.216 kb on + strand, within Echvi_4321 at 5163.216 kb on + strand, within Echvi_4321 at 5163.216 kb on + strand, within Echvi_4321 at 5163.217 kb on - strand, within Echvi_4321 at 5163.229 kb on - strand, within Echvi_4321 at 5163.274 kb on + strand, within Echvi_4321 at 5163.275 kb on - strand, within Echvi_4321 at 5163.285 kb on + strand, within Echvi_4321 at 5163.286 kb on - strand, within Echvi_4321 at 5163.296 kb on - strand, within Echvi_4321 at 5163.368 kb on + strand, within Echvi_4321 at 5163.368 kb on + strand, within Echvi_4321 at 5163.368 kb on + strand, within Echvi_4321 at 5163.370 kb on + strand, within Echvi_4321 at 5163.371 kb on - strand, within Echvi_4321 at 5163.371 kb on - strand, within Echvi_4321 at 5163.371 kb on - strand, within Echvi_4321 at 5163.378 kb on + strand, within Echvi_4321 at 5163.430 kb on + strand, within Echvi_4321 at 5163.490 kb on + strand, within Echvi_4321 at 5163.491 kb on - strand, within Echvi_4321 at 5163.500 kb on + strand, within Echvi_4321 at 5163.560 kb on - strand, within Echvi_4321 at 5163.560 kb on - strand, within Echvi_4321 at 5163.568 kb on - strand, within Echvi_4321 at 5163.568 kb on - strand, within Echvi_4321 at 5163.568 kb on - strand, within Echvi_4321 at 5163.623 kb on + strand, within Echvi_4321 at 5163.623 kb on + strand, within Echvi_4321 at 5163.628 kb on + strand, within Echvi_4321 at 5163.628 kb on + strand, within Echvi_4321 at 5163.742 kb on + strand, within Echvi_4321 at 5163.742 kb on + strand, within Echvi_4321 at 5163.743 kb on - strand, within Echvi_4321 at 5163.747 kb on - strand, within Echvi_4321 at 5163.747 kb on - strand, within Echvi_4321 at 5163.824 kb on + strand, within Echvi_4321 at 5163.824 kb on + strand, within Echvi_4321 at 5163.829 kb on + strand, within Echvi_4321 at 5163.852 kb on + strand, within Echvi_4321 at 5163.852 kb on + strand, within Echvi_4321 at 5163.852 kb on + strand, within Echvi_4321 at 5163.853 kb on - strand, within Echvi_4321 at 5163.853 kb on - strand, within Echvi_4321 at 5163.853 kb on - strand, within Echvi_4321 at 5163.853 kb on - strand, within Echvi_4321 at 5163.897 kb on - strand, within Echvi_4321 at 5163.994 kb on + strand, within Echvi_4321 at 5163.994 kb on + strand, within Echvi_4321 at 5163.995 kb on - strand, within Echvi_4321 at 5163.995 kb on - strand, within Echvi_4321 at 5164.070 kb on - strand, within Echvi_4321 at 5164.159 kb on + strand, within Echvi_4321 at 5164.222 kb on + strand, within Echvi_4321 at 5164.222 kb on + strand, within Echvi_4321 at 5164.237 kb on - strand, within Echvi_4321 at 5164.331 kb on - strand at 5164.447 kb on - strand at 5164.447 kb on - strand at 5164.452 kb on + strand at 5164.453 kb on - strand at 5164.496 kb on + strand at 5164.517 kb on + strand at 5164.699 kb on + strand at 5164.699 kb on + strand at 5164.699 kb on + strand at 5164.699 kb on + strand at 5164.700 kb on - strand at 5164.700 kb on - strand at 5164.700 kb on - strand at 5164.749 kb on + strand at 5164.750 kb on - strand at 5164.750 kb on - strand at 5164.794 kb on + strand at 5164.855 kb on + strand, within Echvi_4322 at 5164.855 kb on + strand, within Echvi_4322 at 5164.876 kb on - strand, within Echvi_4322 at 5164.876 kb on - strand, within Echvi_4322 at 5164.887 kb on + strand, within Echvi_4322 at 5164.887 kb on + strand, within Echvi_4322 at 5164.888 kb on - strand, within Echvi_4322 at 5164.888 kb on - strand, within Echvi_4322 at 5164.923 kb on + strand, within Echvi_4322 at 5164.923 kb on + strand, within Echvi_4322 at 5164.923 kb on + strand, within Echvi_4322 at 5164.923 kb on + strand, within Echvi_4322 at 5164.956 kb on - strand, within Echvi_4322 at 5165.002 kb on - strand, within Echvi_4322 at 5165.008 kb on - strand, within Echvi_4322 at 5165.094 kb on - strand, within Echvi_4322 at 5165.137 kb on - strand, within Echvi_4322 at 5165.253 kb on + strand, within Echvi_4322 at 5165.267 kb on - strand, within Echvi_4322 at 5165.268 kb on + strand, within Echvi_4322 at 5165.268 kb on + strand, within Echvi_4322 at 5165.268 kb on + strand, within Echvi_4322 at 5165.268 kb on + strand, within Echvi_4322 at 5165.268 kb on + strand, within Echvi_4322 at 5165.269 kb on - strand, within Echvi_4322 at 5165.269 kb on - strand, within Echvi_4322 at 5165.269 kb on - strand, within Echvi_4322 at 5165.271 kb on + strand, within Echvi_4322 at 5165.312 kb on + strand, within Echvi_4322 at 5165.319 kb on + strand, within Echvi_4322 at 5165.461 kb on + strand, within Echvi_4322 at 5165.461 kb on + strand, within Echvi_4322 at 5165.461 kb on + strand, within Echvi_4322 at 5165.461 kb on + strand, within Echvi_4322 at 5165.461 kb on + strand, within Echvi_4322 at 5165.462 kb on - strand, within Echvi_4322
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 30 mM remove 5,161,782 + -0.0 5,161,783 - +0.2 5,161,783 - -0.2 5,161,783 - -0.3 5,161,804 + +0.4 5,161,817 + +0.1 5,161,818 - +0.7 5,161,819 + +0.4 5,161,820 - +0.5 5,161,821 + -0.5 5,161,867 + +1.6 5,161,906 + Echvi_4320 0.14 -0.7 5,161,934 - Echvi_4320 0.17 +0.3 5,161,956 + Echvi_4320 0.19 -2.5 5,161,957 - Echvi_4320 0.19 +0.5 5,162,086 - Echvi_4320 0.33 -0.0 5,162,123 + Echvi_4320 0.37 -0.6 5,162,127 - Echvi_4320 0.37 +0.1 5,162,165 - Echvi_4320 0.42 +0.6 5,162,178 + Echvi_4320 0.43 +1.4 5,162,202 + Echvi_4320 0.45 -0.5 5,162,223 + Echvi_4320 0.48 +0.2 5,162,223 + Echvi_4320 0.48 +0.8 5,162,223 + Echvi_4320 0.48 +0.5 5,162,223 + Echvi_4320 0.48 +0.3 5,162,223 + Echvi_4320 0.48 +2.4 5,162,223 + Echvi_4320 0.48 -2.2 5,162,224 - Echvi_4320 0.48 -0.4 5,162,224 - Echvi_4320 0.48 -0.9 5,162,224 - Echvi_4320 0.48 -2.2 5,162,224 - Echvi_4320 0.48 +1.4 5,162,224 - Echvi_4320 0.48 -0.5 5,162,268 + Echvi_4320 0.53 -0.1 5,162,269 - Echvi_4320 0.53 +0.6 5,162,332 + Echvi_4320 0.59 -1.5 5,162,366 - Echvi_4320 0.63 -0.7 5,162,376 - Echvi_4320 0.64 -0.9 5,162,394 + Echvi_4320 0.66 -1.6 5,162,477 - Echvi_4320 0.75 +1.2 5,162,486 - Echvi_4320 0.76 -0.6 5,162,562 + Echvi_4320 0.84 -1.0 5,162,563 - Echvi_4320 0.84 +0.2 5,162,563 - Echvi_4320 0.84 +0.1 5,162,565 - Echvi_4320 0.85 -1.1 5,162,627 + -0.1 5,162,628 - -0.4 5,162,646 - -1.1 5,162,649 + -0.9 5,162,649 + +0.4 5,162,650 - -2.4 5,162,650 - +0.0 5,162,650 - +0.4 5,162,694 + -1.5 5,162,708 + -0.6 5,162,709 - -0.4 5,162,709 - +0.6 5,162,710 + -0.8 5,162,711 - +0.4 5,162,718 - +1.7 5,162,722 - +0.3 5,162,790 + +0.8 5,162,790 + +0.7 5,162,821 - -0.8 5,162,839 - -0.1 5,162,840 + -1.0 5,162,840 + -0.5 5,162,840 + +1.1 5,162,840 + -0.1 5,162,841 - +0.3 5,162,841 - +0.2 5,162,841 - -0.6 5,162,841 - -0.1 5,162,841 - +1.0 5,162,862 + +0.4 5,162,944 + Echvi_4321 0.12 -0.6 5,162,945 - Echvi_4321 0.13 -0.5 5,163,005 + Echvi_4321 0.16 -0.4 5,163,006 - Echvi_4321 0.16 -0.3 5,163,006 - Echvi_4321 0.16 +0.1 5,163,052 - Echvi_4321 0.19 -0.0 5,163,106 - Echvi_4321 0.22 -0.1 5,163,106 - Echvi_4321 0.22 -1.5 5,163,140 - Echvi_4321 0.24 -0.9 5,163,140 - Echvi_4321 0.24 -0.3 5,163,216 + Echvi_4321 0.28 -0.9 5,163,216 + Echvi_4321 0.28 -0.9 5,163,216 + Echvi_4321 0.28 -0.2 5,163,217 - Echvi_4321 0.28 -0.2 5,163,229 - Echvi_4321 0.29 -0.0 5,163,274 + Echvi_4321 0.31 +0.2 5,163,275 - Echvi_4321 0.31 -0.0 5,163,285 + Echvi_4321 0.32 -0.5 5,163,286 - Echvi_4321 0.32 -0.7 5,163,296 - Echvi_4321 0.33 +0.9 5,163,368 + Echvi_4321 0.37 -1.1 5,163,368 + Echvi_4321 0.37 -1.0 5,163,368 + Echvi_4321 0.37 -0.5 5,163,370 + Echvi_4321 0.37 +0.4 5,163,371 - Echvi_4321 0.37 -1.2 5,163,371 - Echvi_4321 0.37 -0.4 5,163,371 - Echvi_4321 0.37 +0.7 5,163,378 + Echvi_4321 0.37 -1.3 5,163,430 + Echvi_4321 0.40 -0.2 5,163,490 + Echvi_4321 0.44 -0.1 5,163,491 - Echvi_4321 0.44 -0.5 5,163,500 + Echvi_4321 0.44 -2.2 5,163,560 - Echvi_4321 0.48 +0.0 5,163,560 - Echvi_4321 0.48 -1.0 5,163,568 - Echvi_4321 0.48 -0.5 5,163,568 - Echvi_4321 0.48 -0.8 5,163,568 - Echvi_4321 0.48 +1.2 5,163,623 + Echvi_4321 0.51 -0.6 5,163,623 + Echvi_4321 0.51 -0.3 5,163,628 + Echvi_4321 0.52 +0.1 5,163,628 + Echvi_4321 0.52 -0.6 5,163,742 + Echvi_4321 0.58 +0.2 5,163,742 + Echvi_4321 0.58 -2.1 5,163,743 - Echvi_4321 0.58 -0.2 5,163,747 - Echvi_4321 0.59 +2.1 5,163,747 - Echvi_4321 0.59 -0.1 5,163,824 + Echvi_4321 0.63 -0.2 5,163,824 + Echvi_4321 0.63 +0.1 5,163,829 + Echvi_4321 0.63 +0.3 5,163,852 + Echvi_4321 0.65 -0.1 5,163,852 + Echvi_4321 0.65 -0.3 5,163,852 + Echvi_4321 0.65 -0.4 5,163,853 - Echvi_4321 0.65 -0.4 5,163,853 - Echvi_4321 0.65 -1.1 5,163,853 - Echvi_4321 0.65 -0.5 5,163,853 - Echvi_4321 0.65 +0.8 5,163,897 - Echvi_4321 0.67 +0.9 5,163,994 + Echvi_4321 0.73 +0.5 5,163,994 + Echvi_4321 0.73 -1.4 5,163,995 - Echvi_4321 0.73 -2.7 5,163,995 - Echvi_4321 0.73 +0.5 5,164,070 - Echvi_4321 0.77 +0.4 5,164,159 + Echvi_4321 0.82 +0.8 5,164,222 + Echvi_4321 0.86 -0.6 5,164,222 + Echvi_4321 0.86 -0.5 5,164,237 - Echvi_4321 0.87 -0.4 5,164,331 - +1.6 5,164,447 - +1.1 5,164,447 - -3.0 5,164,452 + -0.9 5,164,453 - +0.7 5,164,496 + +1.1 5,164,517 + -0.2 5,164,699 + -1.3 5,164,699 + -1.4 5,164,699 + -1.4 5,164,699 + -0.5 5,164,700 - +2.4 5,164,700 - -0.6 5,164,700 - -1.0 5,164,749 + -1.0 5,164,750 - -2.3 5,164,750 - -0.7 5,164,794 + +0.5 5,164,855 + Echvi_4322 0.10 -0.1 5,164,855 + Echvi_4322 0.10 +0.6 5,164,876 - Echvi_4322 0.11 -1.0 5,164,876 - Echvi_4322 0.11 -1.2 5,164,887 + Echvi_4322 0.11 +0.6 5,164,887 + Echvi_4322 0.11 +0.5 5,164,888 - Echvi_4322 0.11 -0.6 5,164,888 - Echvi_4322 0.11 +0.2 5,164,923 + Echvi_4322 0.12 +0.8 5,164,923 + Echvi_4322 0.12 -1.0 5,164,923 + Echvi_4322 0.12 -0.8 5,164,923 + Echvi_4322 0.12 +0.1 5,164,956 - Echvi_4322 0.13 -0.3 5,165,002 - Echvi_4322 0.15 -1.8 5,165,008 - Echvi_4322 0.15 -2.6 5,165,094 - Echvi_4322 0.17 -0.3 5,165,137 - Echvi_4322 0.18 +0.2 5,165,253 + Echvi_4322 0.22 +0.6 5,165,267 - Echvi_4322 0.22 +0.3 5,165,268 + Echvi_4322 0.22 +0.8 5,165,268 + Echvi_4322 0.22 -0.2 5,165,268 + Echvi_4322 0.22 -0.2 5,165,268 + Echvi_4322 0.22 +0.0 5,165,268 + Echvi_4322 0.22 -0.0 5,165,269 - Echvi_4322 0.22 -0.2 5,165,269 - Echvi_4322 0.22 -0.3 5,165,269 - Echvi_4322 0.22 -1.9 5,165,271 + Echvi_4322 0.22 -0.5 5,165,312 + Echvi_4322 0.23 -0.9 5,165,319 + Echvi_4322 0.24 -1.4 5,165,461 + Echvi_4322 0.28 -1.8 5,165,461 + Echvi_4322 0.28 -1.4 5,165,461 + Echvi_4322 0.28 -0.2 5,165,461 + Echvi_4322 0.28 +0.5 5,165,461 + Echvi_4322 0.28 -1.5 5,165,462 - Echvi_4322 0.28 +0.1
Or see this region's nucleotide sequence