Experiment: m.b. nitrite 30 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4078 and Echvi_4079 are separated by 15 nucleotides Echvi_4079 and Echvi_4080 are separated by 91 nucleotides
Echvi_4078: Echvi_4078 - aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit, at 4,887,915 to 4,889,342
_4078
Echvi_4079: Echvi_4079 - Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains), at 4,889,358 to 4,890,752
_4079
Echvi_4080: Echvi_4080 - hypothetical protein, at 4,890,844 to 4,891,941
_4080
Position (kb) 4889
4890
4891 Strain fitness (log2 ratio) -1
0
1
2 at 4889.323 kb on + strand at 4889.333 kb on + strand at 4889.348 kb on + strand at 4889.348 kb on + strand at 4889.348 kb on + strand at 4889.348 kb on + strand at 4889.350 kb on + strand at 4889.398 kb on + strand at 4889.481 kb on + strand at 4889.588 kb on + strand, within Echvi_4079 at 4889.588 kb on + strand, within Echvi_4079 at 4889.600 kb on + strand, within Echvi_4079 at 4889.619 kb on + strand, within Echvi_4079 at 4889.652 kb on + strand, within Echvi_4079 at 4889.709 kb on + strand, within Echvi_4079 at 4889.735 kb on + strand, within Echvi_4079 at 4889.931 kb on + strand, within Echvi_4079 at 4889.933 kb on + strand, within Echvi_4079 at 4890.003 kb on + strand, within Echvi_4079 at 4890.003 kb on + strand, within Echvi_4079 at 4890.033 kb on + strand, within Echvi_4079 at 4890.035 kb on + strand, within Echvi_4079 at 4890.035 kb on + strand, within Echvi_4079 at 4890.060 kb on + strand, within Echvi_4079 at 4890.060 kb on + strand, within Echvi_4079 at 4890.060 kb on + strand, within Echvi_4079 at 4890.060 kb on + strand, within Echvi_4079 at 4890.060 kb on + strand, within Echvi_4079 at 4890.072 kb on + strand, within Echvi_4079 at 4890.158 kb on + strand, within Echvi_4079 at 4890.158 kb on + strand, within Echvi_4079 at 4890.158 kb on + strand, within Echvi_4079 at 4890.173 kb on + strand, within Echvi_4079 at 4890.252 kb on + strand, within Echvi_4079 at 4890.252 kb on + strand, within Echvi_4079 at 4890.402 kb on + strand, within Echvi_4079 at 4890.402 kb on + strand, within Echvi_4079 at 4890.403 kb on - strand, within Echvi_4079 at 4890.404 kb on + strand, within Echvi_4079 at 4890.409 kb on + strand, within Echvi_4079 at 4890.410 kb on - strand, within Echvi_4079 at 4890.447 kb on + strand, within Echvi_4079 at 4890.447 kb on + strand, within Echvi_4079 at 4890.497 kb on + strand, within Echvi_4079 at 4890.618 kb on + strand at 4890.808 kb on + strand at 4890.808 kb on + strand at 4891.732 kb on + strand, within Echvi_4080
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 30 mM remove 4,889,323 + +0.1 4,889,333 + -1.0 4,889,348 + +1.1 4,889,348 + +0.8 4,889,348 + +0.7 4,889,348 + -0.4 4,889,350 + -1.3 4,889,398 + +0.7 4,889,481 + +0.8 4,889,588 + Echvi_4079 0.16 +1.6 4,889,588 + Echvi_4079 0.16 +0.6 4,889,600 + Echvi_4079 0.17 -1.0 4,889,619 + Echvi_4079 0.19 -0.2 4,889,652 + Echvi_4079 0.21 +0.4 4,889,709 + Echvi_4079 0.25 +0.6 4,889,735 + Echvi_4079 0.27 +0.3 4,889,931 + Echvi_4079 0.41 +0.9 4,889,933 + Echvi_4079 0.41 +1.3 4,890,003 + Echvi_4079 0.46 +0.7 4,890,003 + Echvi_4079 0.46 +1.4 4,890,033 + Echvi_4079 0.48 +0.6 4,890,035 + Echvi_4079 0.49 +1.5 4,890,035 + Echvi_4079 0.49 +2.3 4,890,060 + Echvi_4079 0.50 +0.3 4,890,060 + Echvi_4079 0.50 +1.9 4,890,060 + Echvi_4079 0.50 +0.4 4,890,060 + Echvi_4079 0.50 +0.1 4,890,060 + Echvi_4079 0.50 -0.5 4,890,072 + Echvi_4079 0.51 +0.5 4,890,158 + Echvi_4079 0.57 -0.3 4,890,158 + Echvi_4079 0.57 -0.1 4,890,158 + Echvi_4079 0.57 +0.0 4,890,173 + Echvi_4079 0.58 +0.5 4,890,252 + Echvi_4079 0.64 -0.1 4,890,252 + Echvi_4079 0.64 +0.9 4,890,402 + Echvi_4079 0.75 -0.9 4,890,402 + Echvi_4079 0.75 +1.3 4,890,403 - Echvi_4079 0.75 +1.3 4,890,404 + Echvi_4079 0.75 -0.4 4,890,409 + Echvi_4079 0.75 +0.6 4,890,410 - Echvi_4079 0.75 +0.5 4,890,447 + Echvi_4079 0.78 -1.1 4,890,447 + Echvi_4079 0.78 +1.1 4,890,497 + Echvi_4079 0.82 +0.9 4,890,618 + +0.3 4,890,808 + -1.1 4,890,808 + +0.3 4,891,732 + Echvi_4080 0.81 -0.9
Or see this region's nucleotide sequence