Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3452

Experiment: m.b. nitrite 30 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. nitrite 30 mM
4,080,021	-		Echvi_3450	0.47	-0.2
4,080,071	+		Echvi_3450	0.53	-1.4
4,080,119	-		Echvi_3450	0.60	-1.5
4,080,185	-		Echvi_3450	0.68	-0.5
4,080,188	+		Echvi_3450	0.68	+0.4
4,080,189	-		Echvi_3450	0.69	-1.7
4,080,189	-		Echvi_3450	0.69	+0.1
4,080,189	-		Echvi_3450	0.69	+2.6
4,080,275	+		Echvi_3450	0.80	-0.3
4,080,276	-		Echvi_3450	0.80	+1.6
4,080,276	-		Echvi_3450	0.80	+0.9
4,080,276	-		Echvi_3450	0.80	+0.4
4,080,327	+		Echvi_3450	0.87	+0.4
4,080,347	+		Echvi_3450	0.89	-0.6
4,080,352	-		Echvi_3450	0.90	+3.3
4,080,400	+				+0.5
4,080,400	+				-0.2
4,080,401	-				+0.8
4,080,401	-				+0.2
4,080,401	-				+1.0
4,080,466	+				-0.5
4,080,466	+				+1.2
4,080,466	+				-0.4
4,080,466	+				-1.4
4,080,466	+				+0.4
4,080,467	-				-0.5
4,080,513	-				-0.7
4,080,549	+				+1.2
4,080,549	+				-0.1
4,080,565	-				+0.5
4,080,649	-		Echvi_3451	0.29	-0.7
4,080,706	-		Echvi_3451	0.54	+0.1
4,080,795	+				-1.6
4,080,795	+				-0.5
4,080,795	+				-1.2
4,080,796	-				-0.1
4,080,796	-				-1.7
4,080,820	+				+0.2
4,080,824	+				-1.1
4,080,825	-				-0.4
4,080,825	-				+0.6
4,080,835	+				-0.9
4,080,836	-				-1.3
4,080,851	+				-0.9
4,080,851	+				+0.1
4,080,851	+				+0.4
4,080,852	-				+0.2
4,080,886	-				-0.8
4,080,906	-				-0.5
4,080,912	+				-0.5
4,080,917	+				+0.6
4,080,918	-				+0.2
4,080,947	+				-0.6
4,080,976	-				-0.4
4,081,001	+				-1.7
4,081,002	-				-0.3
4,081,003	+				+0.2
4,081,004	-				-2.4
4,081,004	-				-0.3
4,081,122	-				-0.6
4,081,293	+		Echvi_3452	0.10	+0.0
4,081,293	+		Echvi_3452	0.10	-0.1
4,081,305	+		Echvi_3452	0.11	-0.1
4,081,306	-		Echvi_3452	0.11	-0.2
4,081,358	-		Echvi_3452	0.13	-0.7
4,081,448	+		Echvi_3452	0.16	-1.7
4,081,449	-		Echvi_3452	0.16	+1.0
4,081,449	-		Echvi_3452	0.16	-0.6
4,081,527	+		Echvi_3452	0.19	+0.9
4,081,570	-		Echvi_3452	0.21	+0.9
4,081,627	-		Echvi_3452	0.23	+0.9
4,081,627	-		Echvi_3452	0.23	+0.0
4,081,672	-		Echvi_3452	0.25	+1.7
4,081,702	+		Echvi_3452	0.26	+1.3
4,081,946	+		Echvi_3452	0.35	+1.0
4,081,952	+		Echvi_3452	0.36	-2.7
4,081,952	+		Echvi_3452	0.36	+2.7
4,081,952	+		Echvi_3452	0.36	+0.6
4,081,952	+		Echvi_3452	0.36	+0.9
4,081,952	+		Echvi_3452	0.36	+0.7
4,081,952	+		Echvi_3452	0.36	-0.3
4,081,952	+		Echvi_3452	0.36	+0.5
4,081,953	-		Echvi_3452	0.36	-1.0
4,081,953	-		Echvi_3452	0.36	-0.4
4,081,953	-		Echvi_3452	0.36	-1.5
4,081,953	-		Echvi_3452	0.36	+1.1
4,081,953	-		Echvi_3452	0.36	-0.6
4,081,953	-		Echvi_3452	0.36	-1.0
4,081,976	+		Echvi_3452	0.37	-0.0
4,082,113	+		Echvi_3452	0.42	-0.2
4,082,160	+		Echvi_3452	0.44	-1.0
4,082,169	+		Echvi_3452	0.44	+0.3
4,082,217	+		Echvi_3452	0.46	+0.9
4,082,218	-		Echvi_3452	0.46	+0.2
4,082,379	+		Echvi_3452	0.52	-0.2
4,082,392	+		Echvi_3452	0.53	-3.0
4,082,393	-		Echvi_3452	0.53	+0.2
4,082,453	-		Echvi_3452	0.55	+1.0
4,082,489	+		Echvi_3452	0.56	-0.3
4,082,490	-		Echvi_3452	0.56	+0.5
4,082,490	-		Echvi_3452	0.56	-0.1
4,082,490	-		Echvi_3452	0.56	-0.1
4,082,506	+		Echvi_3452	0.57	-1.4
4,082,506	+		Echvi_3452	0.57	-0.2
4,082,556	+		Echvi_3452	0.59	+0.6
4,082,586	+		Echvi_3452	0.60	+0.7
4,082,619	+		Echvi_3452	0.61	+0.3
4,082,624	-		Echvi_3452	0.61	+0.2
4,082,689	-		Echvi_3452	0.64	-0.3
4,082,751	-		Echvi_3452	0.66	-0.1
4,082,965	+		Echvi_3452	0.74	+0.3
4,082,977	+		Echvi_3452	0.75	+1.0
4,083,046	+		Echvi_3452	0.78	+1.1
4,083,241	+		Echvi_3452	0.85	+0.8
4,083,241	+		Echvi_3452	0.85	+0.1
4,083,241	+		Echvi_3452	0.85	-0.7
4,083,241	+		Echvi_3452	0.85	-0.5
4,083,377	-				-0.2
4,083,382	-				-0.4
4,083,420	+				-0.1
4,083,420	+				-0.4
4,083,421	-				+0.8
4,083,421	-				+0.2
4,083,421	-				+0.5
4,083,427	-				-0.6
4,083,427	-				-0.1
4,083,433	+				+0.7
4,083,434	-				+0.1
4,083,445	+				+1.0
4,083,483	+				+0.2
4,083,505	+				-0.0
4,083,505	+				+1.3
4,083,506	-				-2.0
4,083,506	-				+0.6
4,083,506	-				+1.0
4,083,506	-				-0.5
4,083,506	-				+1.5
4,083,527	+				+1.0
4,083,528	-				-0.0
4,083,586	+				-0.6
4,083,587	-				-0.0
4,083,587	-				-1.8
4,083,587	-				-0.3
4,083,597	+				+0.8
4,083,597	+				+0.4
4,083,598	-				+0.3
4,083,598	-				-0.6
4,083,610	-				-1.0
4,083,655	-				+1.2
4,083,704	-				-0.4
4,083,706	+				-0.3
4,083,706	+				+1.4
4,083,706	+				+0.7
4,083,706	+				+0.3
4,083,706	+				+0.2
4,083,706	+				-0.1
4,083,706	+				+0.1
4,083,706	+				+0.7
4,083,707	-				-0.3
4,083,707	-				+1.3
4,083,707	-				+1.9
4,083,707	-				+0.9
4,083,707	-				-1.8
4,083,707	-				-1.3
4,083,707	-				-1.3
4,083,707	-				+1.1
4,083,707	-				+0.8
4,083,711	-				+0.5
4,083,742	-				+1.0
4,083,772	-				+0.9
4,083,808	+				+1.1
4,083,808	+				-1.0
4,083,809	-				+2.0
4,083,809	-				+0.7
4,083,889	-				-2.1
4,083,940	-				+0.0
4,083,940	-				+1.5
4,084,053	+		Echvi_3453	0.27	-0.8
4,084,054	-		Echvi_3453	0.28	-0.3
4,084,059	+		Echvi_3453	0.29	-0.3
4,084,059	+		Echvi_3453	0.29	+1.6
4,084,059	+		Echvi_3453	0.29	-0.6
4,084,060	-		Echvi_3453	0.29	+1.5
4,084,171	+		Echvi_3453	0.50	+0.2
4,084,282	-		Echvi_3453	0.71	-0.8
4,084,291	+		Echvi_3453	0.73	-0.4
4,084,292	-		Echvi_3453	0.73	-0.5
4,084,298	-		Echvi_3453	0.75	-1.4
4,084,325	-		Echvi_3453	0.80	+1.0
4,084,453	+				+0.5
4,084,453	+				+2.5
4,084,453	+				+0.7
4,084,453	+				+0.9
4,084,453	+				+0.8
4,084,453	+				-1.5
4,084,454	-				+0.3
4,084,454	-				-0.0
4,084,454	-				+0.3
4,084,454	-				-0.9
4,084,456	-				+0.2
4,084,537	+				-0.2
4,084,538	-				-0.7