Experiment: m.b. nitrite 30 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_3425 and Echvi_3426 are separated by 89 nucleotides Echvi_3426 and Echvi_3427 are separated by 24 nucleotides Echvi_3427 and Echvi_3428 are separated by 109 nucleotides Echvi_3428 and Echvi_3429 are separated by 419 nucleotides
Echvi_3425: Echvi_3425 - threonyl-tRNA synthetase, at 4,057,564 to 4,059,513
_3425
Echvi_3426: Echvi_3426 - translation initiation factor IF-3, at 4,059,603 to 4,060,154
_3426
Echvi_3427: Echvi_3427 - ribosomal protein L35, at 4,060,179 to 4,060,373
_3427
Echvi_3428: Echvi_3428 - ribosomal protein L20, at 4,060,483 to 4,060,827
_3428
Echvi_3429: Echvi_3429 - Predicted endonuclease containing a URI domain, at 4,061,247 to 4,061,426
_3429
Position (kb)
4060
4061 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4060.145 kb on + strand at 4060.167 kb on + strand at 4060.911 kb on + strand at 4060.926 kb on + strand at 4060.928 kb on + strand at 4060.931 kb on + strand at 4060.931 kb on + strand at 4060.932 kb on - strand at 4061.014 kb on + strand at 4061.015 kb on - strand at 4061.081 kb on + strand at 4061.093 kb on - strand at 4061.093 kb on - strand at 4061.093 kb on - strand at 4061.143 kb on + strand at 4061.160 kb on - strand at 4061.161 kb on + strand at 4061.161 kb on + strand at 4061.162 kb on - strand at 4061.162 kb on - strand at 4061.162 kb on - strand at 4061.164 kb on + strand at 4061.165 kb on - strand at 4061.165 kb on - strand at 4061.259 kb on - strand at 4061.259 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 30 mM remove 4,060,145 + +0.9 4,060,167 + -0.6 4,060,911 + +0.6 4,060,926 + -1.8 4,060,928 + -0.1 4,060,931 + +0.3 4,060,931 + -0.3 4,060,932 - -0.8 4,061,014 + -1.4 4,061,015 - -1.1 4,061,081 + +1.9 4,061,093 - -1.1 4,061,093 - -1.1 4,061,093 - -0.4 4,061,143 + +0.8 4,061,160 - +0.2 4,061,161 + -0.5 4,061,161 + -0.7 4,061,162 - -0.5 4,061,162 - -0.1 4,061,162 - -0.4 4,061,164 + +0.6 4,061,165 - -1.6 4,061,165 - -0.4 4,061,259 - -1.6 4,061,259 - -0.4
Or see this region's nucleotide sequence