Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3291

Experiment: m.b. nitrite 30 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. nitrite 30 mM
3,894,285	+				+0.4
3,894,285	+				+0.8
3,894,286	-				+0.7
3,894,286	-				+0.4
3,894,287	+				+0.7
3,894,287	+				+0.3
3,894,288	-				+0.0
3,894,288	-				+1.0
3,894,298	-				-0.5
3,894,304	+				+0.8
3,894,308	-				+1.1
3,894,374	+				+1.4
3,894,396	+		Echvi_3290	0.11	+1.2
3,894,425	+		Echvi_3290	0.15	+1.4
3,894,425	+		Echvi_3290	0.15	+1.3
3,894,425	+		Echvi_3290	0.15	+0.8
3,894,426	-		Echvi_3290	0.15	+1.4
3,894,453	+		Echvi_3290	0.18	+0.9
3,894,454	-		Echvi_3290	0.19	+1.8
3,894,458	+		Echvi_3290	0.19	+1.3
3,894,458	+		Echvi_3290	0.19	+1.6
3,894,458	+		Echvi_3290	0.19	+0.7
3,894,458	+		Echvi_3290	0.19	+1.2
3,894,458	+		Echvi_3290	0.19	+0.9
3,894,458	+		Echvi_3290	0.19	+0.1
3,894,458	+		Echvi_3290	0.19	+1.7
3,894,459	-		Echvi_3290	0.19	+1.2
3,894,459	-		Echvi_3290	0.19	+1.5
3,894,459	-		Echvi_3290	0.19	+2.8
3,894,462	+		Echvi_3290	0.20	+2.1
3,894,463	-		Echvi_3290	0.20	+2.1
3,894,463	-		Echvi_3290	0.20	+1.0
3,894,463	-		Echvi_3290	0.20	+1.2
3,894,463	-		Echvi_3290	0.20	-0.7
3,894,463	-		Echvi_3290	0.20	+1.0
3,894,463	-		Echvi_3290	0.20	-0.8
3,894,520	+		Echvi_3290	0.27	+0.6
3,894,521	-		Echvi_3290	0.27	+0.3
3,894,556	-		Echvi_3290	0.32	+1.0
3,894,582	+		Echvi_3290	0.36	+1.6
3,894,585	+		Echvi_3290	0.36	+2.0
3,894,585	+		Echvi_3290	0.36	-0.6
3,894,585	+		Echvi_3290	0.36	+1.1
3,894,585	+		Echvi_3290	0.36	+0.7
3,894,592	+		Echvi_3290	0.37	+1.2
3,894,630	+		Echvi_3290	0.42	+0.7
3,894,631	-		Echvi_3290	0.42	+1.3
3,894,644	-		Echvi_3290	0.44	+1.5
3,894,651	+		Echvi_3290	0.45	+1.4
3,894,651	+		Echvi_3290	0.45	+0.7
3,894,655	+		Echvi_3290	0.45	+1.3
3,894,655	+		Echvi_3290	0.45	+1.3
3,894,686	+		Echvi_3290	0.49	+1.3
3,894,686	+		Echvi_3290	0.49	+0.7
3,894,687	-		Echvi_3290	0.50	+1.0
3,894,687	-		Echvi_3290	0.50	+1.3
3,894,807	-		Echvi_3290	0.66	+1.5
3,894,859	+		Echvi_3290	0.73	+1.9
3,894,859	+		Echvi_3290	0.73	+1.3
3,894,880	-		Echvi_3290	0.75	+3.1
3,894,889	+		Echvi_3290	0.77	+1.8
3,894,889	+		Echvi_3290	0.77	+2.1
3,894,907	+		Echvi_3290	0.79	+2.7
3,894,907	+		Echvi_3290	0.79	+1.6
3,895,050	+				+2.0
3,895,059	+				+2.6
3,895,060	-				+2.4
3,895,060	-				+1.6
3,895,084	-				+1.3
3,895,155	+				+0.8
3,895,155	+				+1.4
3,895,156	-				+0.6
3,895,156	-				-0.8
3,895,186	+				+3.3
3,895,186	+				+2.6
3,895,186	+				+2.8
3,895,187	-				-1.9
3,895,187	-				-0.7
3,895,187	-				-1.8
3,895,187	-				+0.0
3,895,206	+				+2.7
3,895,207	-				-1.1
3,895,209	+				+3.3
3,895,209	+				+4.2
3,895,210	-				+0.3
3,895,254	+				+2.6
3,895,255	-				-0.0
3,895,272	+				+1.6
3,895,273	-				-0.1
3,895,273	-				-2.2
3,895,281	+				+3.1
3,895,323	+		Echvi_3291	0.18	+3.4
3,895,323	+		Echvi_3291	0.18	+1.9
3,895,326	+		Echvi_3291	0.19	+3.6
3,895,327	-		Echvi_3291	0.19	-1.9
3,895,349	+		Echvi_3291	0.25	+3.1
3,895,350	-		Echvi_3291	0.26	-0.7
3,895,350	-		Echvi_3291	0.26	-0.1
3,895,351	+		Echvi_3291	0.26	+2.6
3,895,351	+		Echvi_3291	0.26	+2.7
3,895,351	+		Echvi_3291	0.26	+3.4
3,895,351	+		Echvi_3291	0.26	+2.4
3,895,351	+		Echvi_3291	0.26	+2.5
3,895,352	-		Echvi_3291	0.26	-0.3
3,895,352	-		Echvi_3291	0.26	-0.9
3,895,352	-		Echvi_3291	0.26	-0.7
3,895,352	-		Echvi_3291	0.26	-0.5
3,895,352	-		Echvi_3291	0.26	-1.1
3,895,352	-		Echvi_3291	0.26	-0.9
3,895,352	-		Echvi_3291	0.26	-2.5
3,895,408	+		Echvi_3291	0.41	+1.9
3,895,408	+		Echvi_3291	0.41	+0.6
3,895,410	+		Echvi_3291	0.42	+2.7
3,895,411	-		Echvi_3291	0.42	-0.2
3,895,416	-		Echvi_3291	0.43	-2.1
3,895,416	-		Echvi_3291	0.43	+1.7
3,895,485	+		Echvi_3291	0.62	+3.1
3,895,485	+		Echvi_3291	0.62	+2.5
3,895,486	-		Echvi_3291	0.62	-0.2
3,895,486	-		Echvi_3291	0.62	+0.2
3,895,502	+		Echvi_3291	0.66	+3.0
3,895,569	+		Echvi_3291	0.84	+3.7
3,895,570	-		Echvi_3291	0.85	-0.6
3,895,643	+				+3.5
3,895,644	-				+0.9
3,895,682	+		Echvi_3292	0.17	+4.6
3,895,683	-		Echvi_3292	0.18	-2.1
3,895,822	-				-1.6
3,895,897	-				+1.5
3,895,915	+				+0.6
3,895,922	+				+0.6
3,895,923	-				-0.1
3,895,938	+				-0.8
3,895,942	+				-0.8
3,895,942	+				-0.0
3,895,942	+				-0.2
3,895,942	+				+0.4
3,895,942	+				+1.0
3,895,942	+				-0.7
3,895,942	+				-0.4
3,895,943	-				+0.4
3,895,943	-				-0.4
3,895,947	+				-0.8
3,895,947	+				-1.1
3,895,947	+				+0.6
3,895,951	+				+0.0
3,896,001	+		Echvi_3293	0.10	+0.5
3,896,021	+		Echvi_3293	0.14	-0.0
3,896,022	-		Echvi_3293	0.14	-1.0
3,896,028	+		Echvi_3293	0.15	-1.1
3,896,104	-		Echvi_3293	0.29	-0.2
3,896,105	+		Echvi_3293	0.29	+0.1
3,896,106	-		Echvi_3293	0.29	+1.2
3,896,106	-		Echvi_3293	0.29	-0.1
3,896,106	-		Echvi_3293	0.29	-0.6
3,896,123	-		Echvi_3293	0.32	-2.0
3,896,133	+		Echvi_3293	0.34	+0.3
3,896,133	+		Echvi_3293	0.34	-0.2
3,896,134	-		Echvi_3293	0.34	+0.8
3,896,170	+		Echvi_3293	0.41	+0.1
3,896,170	+		Echvi_3293	0.41	+0.4
3,896,171	-		Echvi_3293	0.41	+0.1
3,896,171	-		Echvi_3293	0.41	+0.2
3,896,171	-		Echvi_3293	0.41	-1.0
3,896,231	-		Echvi_3293	0.52	-0.9
3,896,276	-		Echvi_3293	0.60	+0.4
3,896,276	-		Echvi_3293	0.60	+0.3
3,896,277	+		Echvi_3293	0.60	-0.3
3,896,322	+		Echvi_3293	0.68	+0.1
3,896,333	-		Echvi_3293	0.70	+0.3
3,896,344	+		Echvi_3293	0.72	-0.6
3,896,396	-		Echvi_3293	0.81	-0.6
3,896,443	+		Echvi_3293	0.90	-1.9
3,896,443	+		Echvi_3293	0.90	-0.6
3,896,444	-		Echvi_3293	0.90	-1.2
3,896,444	-		Echvi_3293	0.90	-1.8
3,896,489	-				-0.3
3,896,498	+				+1.1
3,896,499	-				-0.3
3,896,499	-				+0.6
3,896,499	-				-0.2
3,896,518	+				+0.2
3,896,519	-				+0.2
3,896,558	+				-1.1
3,896,566	+				-0.6
3,896,566	+				+0.1
3,896,567	-				-0.6
3,896,567	-				-0.3
3,896,570	+				-1.1
3,896,571	-				-1.5
3,896,575	+				-0.0
3,896,575	+				+1.1
3,896,575	+				-0.3
3,896,599	-				-2.2
3,896,624	+				-0.3
3,896,624	+				+0.2
3,896,625	-				-0.3