Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2671

Experiment: m.b. nitrite 30 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. nitrite 30 mM
3,170,580	+		Echvi_2670	0.55	+0.3
3,170,581	-		Echvi_2670	0.55	+0.0
3,170,608	+		Echvi_2670	0.57	+1.6
3,170,634	+		Echvi_2670	0.58	-1.5
3,170,635	-		Echvi_2670	0.58	+1.0
3,170,691	+		Echvi_2670	0.61	+0.5
3,170,692	-		Echvi_2670	0.61	-0.2
3,170,737	-		Echvi_2670	0.63	+0.8
3,170,739	+		Echvi_2670	0.63	+0.3
3,170,740	-		Echvi_2670	0.63	-0.7
3,170,740	-		Echvi_2670	0.63	+0.0
3,170,770	-		Echvi_2670	0.65	+0.2
3,170,779	-		Echvi_2670	0.66	-1.0
3,170,780	+		Echvi_2670	0.66	+0.3
3,170,781	-		Echvi_2670	0.66	-0.5
3,170,793	+		Echvi_2670	0.66	-1.6
3,170,793	+		Echvi_2670	0.66	-1.2
3,170,829	+		Echvi_2670	0.68	-2.0
3,170,829	+		Echvi_2670	0.68	+0.0
3,170,829	+		Echvi_2670	0.68	+0.7
3,170,830	-		Echvi_2670	0.68	+0.0
3,170,830	-		Echvi_2670	0.68	+0.0
3,170,830	-		Echvi_2670	0.68	+0.0
3,170,830	-		Echvi_2670	0.68	+1.2
3,170,830	-		Echvi_2670	0.68	+1.4
3,170,832	-		Echvi_2670	0.68	+1.1
3,170,936	-		Echvi_2670	0.74	+0.2
3,171,137	+		Echvi_2670	0.84	-2.3
3,171,157	+		Echvi_2670	0.85	+0.8
3,171,157	+		Echvi_2670	0.85	-2.8
3,171,158	-		Echvi_2670	0.85	-0.2
3,171,210	+		Echvi_2670	0.88	-0.9
3,171,291	-				-0.3
3,171,293	-				-0.5
3,171,293	-				-0.5
3,171,349	-				-0.3
3,171,357	-				-0.1
3,171,377	+				-1.5
3,171,377	+				+1.0
3,171,377	+				-2.4
3,171,378	-				-1.0
3,171,422	-				+0.8
3,171,440	-				-1.5
3,171,447	-				+1.2
3,171,449	+				-0.1
3,171,465	+				-1.8
3,171,467	+				-1.1
3,171,467	+				-1.4
3,171,468	-				+0.5
3,171,468	-				+0.4
3,171,507	+				-2.3
3,171,524	+				+0.3
3,171,539	+				-1.5
3,171,539	+				-0.3
3,171,540	-				-0.2
3,171,540	-				-0.6
3,171,551	-				-0.9
3,171,560	-				+0.3
3,171,560	-				-1.8
3,171,564	-				+0.5
3,171,615	-				-0.8
3,171,658	-				+0.6
3,171,658	-				-1.8
3,171,669	+				-0.8
3,171,670	-				-1.8
3,171,677	+				-0.9
3,171,678	-				-0.2
3,171,678	-				-0.5
3,171,732	-		Echvi_2671	0.11	-1.0
3,171,732	-		Echvi_2671	0.11	+1.0
3,171,732	-		Echvi_2671	0.11	+0.0
3,171,770	-		Echvi_2671	0.13	-0.4
3,171,770	-		Echvi_2671	0.13	+0.7
3,171,772	+		Echvi_2671	0.13	-0.2
3,171,773	-		Echvi_2671	0.13	+0.5
3,171,783	+		Echvi_2671	0.14	-0.4
3,171,784	-		Echvi_2671	0.14	-0.4
3,171,800	-		Echvi_2671	0.15	+0.2
3,171,840	+		Echvi_2671	0.17	+0.0
3,171,841	-		Echvi_2671	0.17	-0.9
3,171,843	-		Echvi_2671	0.17	+0.1
3,171,843	-		Echvi_2671	0.17	+1.1
3,171,843	-		Echvi_2671	0.17	-0.1
3,171,966	+		Echvi_2671	0.23	+0.7
3,171,967	-		Echvi_2671	0.23	+1.6
3,171,969	-		Echvi_2671	0.23	+1.6
3,172,056	+		Echvi_2671	0.28	-1.5
3,172,057	-		Echvi_2671	0.28	+0.9
3,172,069	-		Echvi_2671	0.29	+0.3
3,172,069	-		Echvi_2671	0.29	+0.3
3,172,113	+		Echvi_2671	0.31	-0.5
3,172,113	+		Echvi_2671	0.31	-0.4
3,172,133	+		Echvi_2671	0.32	-0.5
3,172,189	-		Echvi_2671	0.35	+0.4
3,172,225	+		Echvi_2671	0.37	-1.3
3,172,226	-		Echvi_2671	0.37	+0.2
3,172,227	+		Echvi_2671	0.37	-1.8
3,172,228	-		Echvi_2671	0.37	+1.2
3,172,228	-		Echvi_2671	0.37	+0.3
3,172,390	-		Echvi_2671	0.45	-0.3
3,172,400	+		Echvi_2671	0.45	-1.0
3,172,400	+		Echvi_2671	0.45	+0.0
3,172,408	-		Echvi_2671	0.46	-1.3
3,172,483	-		Echvi_2671	0.50	-1.4
3,172,483	-		Echvi_2671	0.50	-0.4
3,172,516	-		Echvi_2671	0.51	-0.7
3,172,516	-		Echvi_2671	0.51	-1.1
3,172,617	+		Echvi_2671	0.57	-1.3
3,172,780	-		Echvi_2671	0.65	+1.1
3,172,838	+		Echvi_2671	0.68	-1.7
3,172,838	+		Echvi_2671	0.68	+0.7
3,172,839	-		Echvi_2671	0.68	+0.1
3,172,947	+		Echvi_2671	0.74	-1.1
3,172,948	-		Echvi_2671	0.74	-1.6
3,172,948	-		Echvi_2671	0.74	-0.7
3,172,948	-		Echvi_2671	0.74	+0.5
3,172,950	+		Echvi_2671	0.74	+0.3
3,172,950	+		Echvi_2671	0.74	+0.0
3,172,951	-		Echvi_2671	0.74	+0.0
3,172,973	-		Echvi_2671	0.75	+1.1
3,173,093	-		Echvi_2671	0.81	-2.7
3,173,136	-		Echvi_2671	0.83	+0.0
3,173,174	-		Echvi_2671	0.85	+0.5
3,173,183	-		Echvi_2671	0.86	-0.1
3,173,232	+		Echvi_2671	0.88	+0.7
3,173,232	+		Echvi_2671	0.88	-1.7
3,173,233	-		Echvi_2671	0.88	+1.1
3,173,233	-		Echvi_2671	0.88	-0.4
3,173,234	+		Echvi_2671	0.88	-1.2
3,173,235	-		Echvi_2671	0.88	+2.0
3,173,235	-		Echvi_2671	0.88	+1.5
3,173,268	+				-1.0
3,173,314	+				-0.1
3,173,353	-				-0.8
3,173,378	+				-1.1
3,173,379	-				+0.7
3,173,479	-				-0.3
3,173,480	+				+0.6
3,173,480	+				-1.1
3,173,480	+				-0.1
3,173,481	-				-1.0
3,173,481	-				+0.4
3,173,481	-				-0.2
3,173,481	-				-0.5
3,173,481	-				-1.8
3,173,501	-				+0.2
3,173,569	+				+0.3
3,173,570	-				-1.0
3,173,596	+				-0.5
3,173,596	+				+0.3
3,173,597	-				-1.1
3,173,609	+				-0.6
3,173,609	+				-1.1
3,173,609	+				-2.2
3,173,610	-		Echvi_2672	0.10	+0.2
3,173,611	+		Echvi_2672	0.10	-0.1
3,173,611	+		Echvi_2672	0.10	+0.0
3,173,612	-		Echvi_2672	0.10	-0.8
3,173,615	+		Echvi_2672	0.10	+1.3
3,173,615	+		Echvi_2672	0.10	-0.8
3,173,616	-		Echvi_2672	0.10	-0.1
3,173,616	-		Echvi_2672	0.10	+0.9
3,173,616	-		Echvi_2672	0.10	+0.1
3,173,616	-		Echvi_2672	0.10	-0.4
3,173,616	-		Echvi_2672	0.10	-0.2
3,173,617	+		Echvi_2672	0.11	-1.1
3,173,618	-		Echvi_2672	0.11	-0.4
3,173,618	-		Echvi_2672	0.11	+0.1
3,173,652	+		Echvi_2672	0.13	-2.4
3,173,674	+		Echvi_2672	0.15	-1.0
3,173,675	-		Echvi_2672	0.15	+0.7
3,173,675	-		Echvi_2672	0.15	-0.3
3,173,694	+		Echvi_2672	0.16	-0.4
3,173,695	-		Echvi_2672	0.16	-0.3
3,173,725	+		Echvi_2672	0.18	-2.8
3,173,726	-				+0.7
3,173,794	+		Echvi_2672	0.23	-1.1
3,173,796	+		Echvi_2672	0.24	-0.3
3,173,797	-		Echvi_2672	0.24	+0.4
3,173,797	-		Echvi_2672	0.24	+0.6
3,173,797	-		Echvi_2672	0.24	-1.5
3,173,800	+		Echvi_2672	0.24	-3.0
3,173,800	+		Echvi_2672	0.24	-0.0
3,173,800	+		Echvi_2672	0.24	+0.3
3,173,875	-		Echvi_2672	0.29	+0.2
3,173,907	+		Echvi_2672	0.32	-1.1
3,173,908	-		Echvi_2672	0.32	+0.1
3,173,908	-		Echvi_2672	0.32	+0.2
3,173,908	-		Echvi_2672	0.32	+0.7
3,173,937	+		Echvi_2672	0.34	+1.9
3,173,959	+		Echvi_2672	0.35	-1.5
3,173,959	+		Echvi_2672	0.35	-1.9
3,173,960	-		Echvi_2672	0.36	+0.0
3,173,960	-		Echvi_2672	0.36	-1.0
3,173,986	+		Echvi_2672	0.37	+0.3
3,173,986	+		Echvi_2672	0.37	+0.0
3,173,989	+		Echvi_2672	0.38	-1.1
3,173,989	+		Echvi_2672	0.38	-0.8
3,173,989	+		Echvi_2672	0.38	-1.5
3,173,990	-		Echvi_2672	0.38	+0.4
3,174,033	-		Echvi_2672	0.41	-2.3
3,174,053	+		Echvi_2672	0.42	+1.1
3,174,072	+		Echvi_2672	0.44	-1.1
3,174,128	-		Echvi_2672	0.48	-1.3
3,174,146	-		Echvi_2672	0.49	+0.7
3,174,149	-		Echvi_2672	0.49	+0.7
3,174,184	-		Echvi_2672	0.52	+0.0
3,174,211	-		Echvi_2672	0.54	+0.1
3,174,211	-		Echvi_2672	0.54	+0.0
3,174,304	+		Echvi_2672	0.61	-0.7
3,174,304	+		Echvi_2672	0.61	-3.0
3,174,456	+		Echvi_2672	0.72	-0.8