Experiment: m.b. nitrite 30 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0864 and Echvi_0865 overlap by 26 nucleotides Echvi_0865 and Echvi_0866 are separated by 404 nucleotides
Echvi_0864: Echvi_0864 - hypothetical protein, at 986,920 to 987,156
_0864
Echvi_0865: Echvi_0865 - RNA polymerase sigma factor, sigma-70 family, at 987,131 to 987,733
_0865
Echvi_0866: Echvi_0866 - hypothetical protein, at 988,138 to 988,773
_0866
Position (kb) 987
988 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 986.217 kb on - strand at 986.217 kb on - strand at 986.285 kb on + strand at 986.334 kb on + strand at 986.367 kb on + strand at 986.367 kb on + strand at 986.444 kb on + strand at 986.445 kb on - strand at 986.445 kb on - strand at 986.487 kb on - strand at 986.487 kb on - strand at 986.487 kb on - strand at 986.492 kb on - strand at 986.500 kb on + strand at 986.546 kb on + strand at 986.546 kb on + strand at 986.546 kb on + strand at 986.549 kb on + strand at 986.551 kb on + strand at 986.551 kb on + strand at 986.551 kb on + strand at 986.551 kb on + strand at 986.551 kb on + strand at 986.553 kb on + strand at 986.553 kb on + strand at 986.583 kb on - strand at 986.603 kb on + strand at 986.603 kb on + strand at 986.604 kb on - strand at 986.604 kb on - strand at 986.624 kb on - strand at 986.624 kb on - strand at 986.624 kb on - strand at 986.624 kb on - strand at 986.630 kb on + strand at 986.630 kb on + strand at 986.630 kb on + strand at 986.631 kb on - strand at 986.634 kb on + strand at 986.635 kb on - strand at 986.696 kb on - strand at 986.704 kb on + strand at 986.704 kb on + strand at 986.755 kb on + strand at 986.755 kb on + strand at 986.755 kb on + strand at 986.755 kb on + strand at 986.763 kb on + strand at 986.764 kb on - strand at 986.814 kb on + strand at 986.814 kb on + strand at 986.815 kb on - strand at 986.819 kb on - strand at 986.819 kb on - strand at 986.819 kb on - strand at 986.830 kb on + strand at 986.831 kb on - strand at 986.898 kb on - strand at 986.904 kb on + strand at 986.997 kb on + strand, within Echvi_0864 at 987.035 kb on + strand, within Echvi_0864 at 987.036 kb on - strand, within Echvi_0864 at 987.111 kb on - strand, within Echvi_0864 at 987.112 kb on + strand, within Echvi_0864 at 987.112 kb on + strand, within Echvi_0864 at 987.112 kb on + strand, within Echvi_0864 at 987.112 kb on + strand, within Echvi_0864 at 987.112 kb on + strand, within Echvi_0864 at 987.112 kb on + strand, within Echvi_0864 at 987.113 kb on - strand, within Echvi_0864 at 987.113 kb on - strand, within Echvi_0864 at 987.113 kb on - strand, within Echvi_0864 at 987.113 kb on - strand, within Echvi_0864 at 987.113 kb on - strand, within Echvi_0864 at 987.113 kb on - strand, within Echvi_0864 at 987.113 kb on - strand, within Echvi_0864 at 987.113 kb on - strand, within Echvi_0864 at 987.113 kb on - strand, within Echvi_0864 at 987.113 kb on - strand, within Echvi_0864 at 987.113 kb on - strand, within Echvi_0864 at 987.113 kb on - strand, within Echvi_0864 at 987.116 kb on + strand, within Echvi_0864 at 987.116 kb on + strand, within Echvi_0864 at 987.116 kb on + strand, within Echvi_0864 at 987.116 kb on + strand, within Echvi_0864 at 987.116 kb on + strand, within Echvi_0864 at 987.116 kb on + strand, within Echvi_0864 at 987.117 kb on - strand, within Echvi_0864 at 987.117 kb on - strand, within Echvi_0864 at 987.117 kb on - strand, within Echvi_0864 at 987.117 kb on - strand, within Echvi_0864 at 987.117 kb on - strand, within Echvi_0864 at 987.117 kb on - strand, within Echvi_0864 at 987.117 kb on - strand, within Echvi_0864 at 987.117 kb on - strand, within Echvi_0864 at 987.121 kb on + strand, within Echvi_0864 at 987.121 kb on + strand, within Echvi_0864 at 987.121 kb on + strand, within Echvi_0864 at 987.122 kb on - strand, within Echvi_0864 at 987.122 kb on - strand, within Echvi_0864 at 987.156 kb on + strand at 987.156 kb on + strand at 987.157 kb on - strand at 987.168 kb on - strand at 987.168 kb on - strand at 987.236 kb on + strand, within Echvi_0865 at 987.236 kb on + strand, within Echvi_0865 at 987.237 kb on - strand, within Echvi_0865 at 987.237 kb on - strand, within Echvi_0865 at 987.237 kb on - strand, within Echvi_0865 at 987.237 kb on - strand, within Echvi_0865 at 987.237 kb on - strand, within Echvi_0865 at 987.237 kb on - strand, within Echvi_0865 at 987.277 kb on + strand, within Echvi_0865 at 987.277 kb on + strand, within Echvi_0865 at 987.277 kb on + strand, within Echvi_0865 at 987.279 kb on + strand, within Echvi_0865 at 987.279 kb on + strand, within Echvi_0865 at 987.279 kb on + strand, within Echvi_0865 at 987.279 kb on + strand, within Echvi_0865 at 987.280 kb on - strand, within Echvi_0865 at 987.280 kb on - strand, within Echvi_0865 at 987.280 kb on - strand, within Echvi_0865 at 987.280 kb on - strand, within Echvi_0865 at 987.328 kb on + strand, within Echvi_0865 at 987.339 kb on - strand, within Echvi_0865 at 987.403 kb on + strand, within Echvi_0865 at 987.403 kb on + strand, within Echvi_0865 at 987.404 kb on - strand, within Echvi_0865 at 987.433 kb on + strand, within Echvi_0865 at 987.465 kb on + strand, within Echvi_0865 at 987.471 kb on - strand, within Echvi_0865 at 987.471 kb on - strand, within Echvi_0865 at 987.527 kb on - strand, within Echvi_0865 at 987.527 kb on - strand, within Echvi_0865 at 987.528 kb on + strand, within Echvi_0865 at 987.554 kb on - strand, within Echvi_0865 at 987.566 kb on + strand, within Echvi_0865 at 987.567 kb on - strand, within Echvi_0865 at 987.605 kb on + strand, within Echvi_0865 at 987.606 kb on - strand, within Echvi_0865 at 987.608 kb on + strand, within Echvi_0865 at 987.608 kb on + strand, within Echvi_0865 at 987.608 kb on + strand, within Echvi_0865 at 987.608 kb on + strand, within Echvi_0865 at 987.609 kb on - strand, within Echvi_0865 at 987.613 kb on + strand, within Echvi_0865 at 987.613 kb on + strand, within Echvi_0865 at 987.613 kb on + strand, within Echvi_0865 at 987.613 kb on + strand, within Echvi_0865 at 987.614 kb on - strand, within Echvi_0865 at 987.614 kb on - strand, within Echvi_0865 at 987.614 kb on - strand, within Echvi_0865 at 987.616 kb on - strand, within Echvi_0865 at 987.616 kb on - strand, within Echvi_0865 at 987.640 kb on + strand, within Echvi_0865 at 987.640 kb on + strand, within Echvi_0865 at 987.640 kb on + strand, within Echvi_0865 at 987.641 kb on - strand at 987.642 kb on + strand, within Echvi_0865 at 987.642 kb on + strand, within Echvi_0865 at 987.643 kb on - strand, within Echvi_0865 at 987.646 kb on + strand, within Echvi_0865 at 987.646 kb on + strand, within Echvi_0865 at 987.646 kb on + strand, within Echvi_0865 at 987.647 kb on - strand, within Echvi_0865 at 987.647 kb on - strand, within Echvi_0865 at 987.647 kb on - strand, within Echvi_0865 at 987.650 kb on + strand, within Echvi_0865 at 987.650 kb on + strand, within Echvi_0865 at 987.651 kb on - strand, within Echvi_0865 at 987.651 kb on - strand, within Echvi_0865 at 987.751 kb on + strand at 987.771 kb on + strand at 987.784 kb on - strand at 987.797 kb on + strand at 987.798 kb on - strand at 988.066 kb on + strand at 988.111 kb on - strand at 988.175 kb on + strand at 988.191 kb on - strand at 988.200 kb on + strand at 988.200 kb on + strand at 988.200 kb on + strand at 988.200 kb on + strand at 988.230 kb on + strand, within Echvi_0866 at 988.232 kb on + strand, within Echvi_0866 at 988.232 kb on + strand, within Echvi_0866 at 988.232 kb on + strand, within Echvi_0866 at 988.239 kb on + strand, within Echvi_0866 at 988.281 kb on + strand, within Echvi_0866 at 988.282 kb on - strand, within Echvi_0866 at 988.289 kb on + strand, within Echvi_0866 at 988.290 kb on - strand, within Echvi_0866 at 988.308 kb on - strand, within Echvi_0866 at 988.362 kb on + strand, within Echvi_0866 at 988.363 kb on - strand, within Echvi_0866 at 988.391 kb on - strand, within Echvi_0866 at 988.406 kb on - strand, within Echvi_0866 at 988.434 kb on + strand, within Echvi_0866 at 988.438 kb on + strand, within Echvi_0866 at 988.451 kb on - strand, within Echvi_0866 at 988.452 kb on + strand, within Echvi_0866 at 988.452 kb on + strand, within Echvi_0866 at 988.453 kb on - strand, within Echvi_0866 at 988.453 kb on - strand, within Echvi_0866 at 988.457 kb on + strand, within Echvi_0866 at 988.457 kb on + strand, within Echvi_0866 at 988.458 kb on - strand, within Echvi_0866 at 988.468 kb on - strand, within Echvi_0866 at 988.537 kb on - strand, within Echvi_0866 at 988.551 kb on - strand, within Echvi_0866 at 988.569 kb on + strand, within Echvi_0866 at 988.569 kb on + strand, within Echvi_0866 at 988.569 kb on + strand, within Echvi_0866 at 988.570 kb on - strand, within Echvi_0866 at 988.570 kb on - strand, within Echvi_0866 at 988.570 kb on - strand, within Echvi_0866 at 988.570 kb on - strand, within Echvi_0866 at 988.570 kb on - strand, within Echvi_0866 at 988.570 kb on - strand, within Echvi_0866 at 988.648 kb on - strand, within Echvi_0866 at 988.687 kb on + strand, within Echvi_0866 at 988.688 kb on - strand, within Echvi_0866 at 988.694 kb on + strand, within Echvi_0866 at 988.694 kb on + strand, within Echvi_0866 at 988.694 kb on + strand, within Echvi_0866 at 988.695 kb on - strand, within Echvi_0866 at 988.695 kb on - strand, within Echvi_0866 at 988.697 kb on - strand, within Echvi_0866 at 988.697 kb on - strand, within Echvi_0866 at 988.704 kb on - strand, within Echvi_0866 at 988.717 kb on + strand at 988.717 kb on + strand at 988.718 kb on - strand at 988.718 kb on - strand at 988.725 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 30 mM remove 986,217 - +0.8 986,217 - +1.6 986,285 + +0.3 986,334 + -1.4 986,367 + -1.7 986,367 + -0.7 986,444 + -1.0 986,445 - -1.7 986,445 - -0.5 986,487 - +0.4 986,487 - -0.5 986,487 - -0.4 986,492 - +0.1 986,500 + -0.7 986,546 + -1.3 986,546 + -0.7 986,546 + +0.3 986,549 + -0.1 986,551 + -0.5 986,551 + -1.1 986,551 + -0.2 986,551 + +0.5 986,551 + +0.6 986,553 + -1.2 986,553 + +0.7 986,583 - -1.4 986,603 + +2.0 986,603 + +0.2 986,604 - +0.3 986,604 - +0.8 986,624 - -0.5 986,624 - +0.2 986,624 - +1.3 986,624 - +1.0 986,630 + +0.5 986,630 + -0.1 986,630 + -0.3 986,631 - +0.9 986,634 + -1.0 986,635 - +0.1 986,696 - +1.1 986,704 + -0.7 986,704 + -0.6 986,755 + -0.1 986,755 + +1.0 986,755 + -2.5 986,755 + -1.8 986,763 + -1.1 986,764 - +0.3 986,814 + -0.1 986,814 + +0.4 986,815 - -2.2 986,819 - +0.4 986,819 - +0.9 986,819 - -0.6 986,830 + -0.9 986,831 - +0.6 986,898 - +0.6 986,904 + +0.4 986,997 + Echvi_0864 0.32 +0.6 987,035 + Echvi_0864 0.49 -0.7 987,036 - Echvi_0864 0.49 +1.3 987,111 - Echvi_0864 0.81 -3.7 987,112 + Echvi_0864 0.81 +0.2 987,112 + Echvi_0864 0.81 +0.7 987,112 + Echvi_0864 0.81 -1.8 987,112 + Echvi_0864 0.81 +1.0 987,112 + Echvi_0864 0.81 -0.7 987,112 + Echvi_0864 0.81 -0.8 987,113 - Echvi_0864 0.81 +0.5 987,113 - Echvi_0864 0.81 +0.2 987,113 - Echvi_0864 0.81 -0.4 987,113 - Echvi_0864 0.81 -0.9 987,113 - Echvi_0864 0.81 +1.6 987,113 - Echvi_0864 0.81 +0.4 987,113 - Echvi_0864 0.81 -1.0 987,113 - Echvi_0864 0.81 +1.2 987,113 - Echvi_0864 0.81 -1.5 987,113 - Echvi_0864 0.81 -1.1 987,113 - Echvi_0864 0.81 -0.2 987,113 - Echvi_0864 0.81 +1.5 987,116 + Echvi_0864 0.83 +0.5 987,116 + Echvi_0864 0.83 -0.2 987,116 + Echvi_0864 0.83 +0.0 987,116 + Echvi_0864 0.83 -0.0 987,116 + Echvi_0864 0.83 -0.1 987,116 + Echvi_0864 0.83 -0.1 987,117 - Echvi_0864 0.83 -1.3 987,117 - Echvi_0864 0.83 +0.4 987,117 - Echvi_0864 0.83 +0.2 987,117 - Echvi_0864 0.83 -0.8 987,117 - Echvi_0864 0.83 -0.9 987,117 - Echvi_0864 0.83 +0.4 987,117 - Echvi_0864 0.83 -2.4 987,117 - Echvi_0864 0.83 -0.7 987,121 + Echvi_0864 0.85 +0.2 987,121 + Echvi_0864 0.85 +0.3 987,121 + Echvi_0864 0.85 -0.3 987,122 - Echvi_0864 0.85 -1.0 987,122 - Echvi_0864 0.85 -1.1 987,156 + -0.1 987,156 + -1.4 987,157 - -0.6 987,168 - -0.6 987,168 - -0.8 987,236 + Echvi_0865 0.17 -0.1 987,236 + Echvi_0865 0.17 +0.2 987,237 - Echvi_0865 0.18 +0.6 987,237 - Echvi_0865 0.18 -0.5 987,237 - Echvi_0865 0.18 -1.5 987,237 - Echvi_0865 0.18 -2.3 987,237 - Echvi_0865 0.18 -0.2 987,237 - Echvi_0865 0.18 -1.0 987,277 + Echvi_0865 0.24 +0.9 987,277 + Echvi_0865 0.24 -0.4 987,277 + Echvi_0865 0.24 -1.2 987,279 + Echvi_0865 0.25 +0.6 987,279 + Echvi_0865 0.25 +0.6 987,279 + Echvi_0865 0.25 -0.4 987,279 + Echvi_0865 0.25 -1.0 987,280 - Echvi_0865 0.25 -0.9 987,280 - Echvi_0865 0.25 -0.5 987,280 - Echvi_0865 0.25 +0.2 987,280 - Echvi_0865 0.25 -1.2 987,328 + Echvi_0865 0.33 +1.0 987,339 - Echvi_0865 0.34 -0.6 987,403 + Echvi_0865 0.45 -1.2 987,403 + Echvi_0865 0.45 -0.4 987,404 - Echvi_0865 0.45 -1.6 987,433 + Echvi_0865 0.50 -1.0 987,465 + Echvi_0865 0.55 +0.7 987,471 - Echvi_0865 0.56 +1.4 987,471 - Echvi_0865 0.56 -1.1 987,527 - Echvi_0865 0.66 -2.9 987,527 - Echvi_0865 0.66 +0.9 987,528 + Echvi_0865 0.66 -1.0 987,554 - Echvi_0865 0.70 -1.9 987,566 + Echvi_0865 0.72 +0.6 987,567 - Echvi_0865 0.72 +0.4 987,605 + Echvi_0865 0.79 +0.2 987,606 - Echvi_0865 0.79 -0.3 987,608 + Echvi_0865 0.79 +0.6 987,608 + Echvi_0865 0.79 -0.1 987,608 + Echvi_0865 0.79 +0.5 987,608 + Echvi_0865 0.79 -1.0 987,609 - Echvi_0865 0.79 -0.1 987,613 + Echvi_0865 0.80 -0.8 987,613 + Echvi_0865 0.80 +2.7 987,613 + Echvi_0865 0.80 +1.0 987,613 + Echvi_0865 0.80 +0.2 987,614 - Echvi_0865 0.80 -0.5 987,614 - Echvi_0865 0.80 -1.8 987,614 - Echvi_0865 0.80 -1.2 987,616 - Echvi_0865 0.80 -1.3 987,616 - Echvi_0865 0.80 -0.9 987,640 + Echvi_0865 0.84 +0.5 987,640 + Echvi_0865 0.84 +0.1 987,640 + Echvi_0865 0.84 -0.2 987,641 - +3.5 987,642 + Echvi_0865 0.85 +0.0 987,642 + Echvi_0865 0.85 -0.7 987,643 - Echvi_0865 0.85 -1.2 987,646 + Echvi_0865 0.85 +0.5 987,646 + Echvi_0865 0.85 -2.0 987,646 + Echvi_0865 0.85 -0.7 987,647 - Echvi_0865 0.86 -0.1 987,647 - Echvi_0865 0.86 -1.0 987,647 - Echvi_0865 0.86 -0.1 987,650 + Echvi_0865 0.86 +0.1 987,650 + Echvi_0865 0.86 -0.9 987,651 - Echvi_0865 0.86 -0.2 987,651 - Echvi_0865 0.86 -0.7 987,751 + -1.1 987,771 + +1.4 987,784 - +0.6 987,797 + -1.4 987,798 - -0.4 988,066 + +1.1 988,111 - +0.1 988,175 + -1.2 988,191 - +0.9 988,200 + -1.1 988,200 + -0.5 988,200 + -0.5 988,200 + -0.5 988,230 + Echvi_0866 0.14 -0.0 988,232 + Echvi_0866 0.15 -0.4 988,232 + Echvi_0866 0.15 +0.5 988,232 + Echvi_0866 0.15 -0.8 988,239 + Echvi_0866 0.16 -1.7 988,281 + Echvi_0866 0.22 -0.3 988,282 - Echvi_0866 0.23 +0.3 988,289 + Echvi_0866 0.24 -0.8 988,290 - Echvi_0866 0.24 +0.1 988,308 - Echvi_0866 0.27 +0.2 988,362 + Echvi_0866 0.35 +0.2 988,363 - Echvi_0866 0.35 +0.3 988,391 - Echvi_0866 0.40 -0.1 988,406 - Echvi_0866 0.42 +1.3 988,434 + Echvi_0866 0.47 -0.3 988,438 + Echvi_0866 0.47 +0.4 988,451 - Echvi_0866 0.49 +0.2 988,452 + Echvi_0866 0.49 -0.5 988,452 + Echvi_0866 0.49 +0.6 988,453 - Echvi_0866 0.50 +0.4 988,453 - Echvi_0866 0.50 -0.4 988,457 + Echvi_0866 0.50 -1.2 988,457 + Echvi_0866 0.50 -0.2 988,458 - Echvi_0866 0.50 -0.8 988,468 - Echvi_0866 0.52 +0.1 988,537 - Echvi_0866 0.63 -1.7 988,551 - Echvi_0866 0.65 -0.1 988,569 + Echvi_0866 0.68 -0.0 988,569 + Echvi_0866 0.68 -0.2 988,569 + Echvi_0866 0.68 -1.4 988,570 - Echvi_0866 0.68 +1.2 988,570 - Echvi_0866 0.68 +0.6 988,570 - Echvi_0866 0.68 +1.0 988,570 - Echvi_0866 0.68 +0.8 988,570 - Echvi_0866 0.68 -0.5 988,570 - Echvi_0866 0.68 -0.1 988,648 - Echvi_0866 0.80 +0.3 988,687 + Echvi_0866 0.86 -0.2 988,688 - Echvi_0866 0.86 -0.5 988,694 + Echvi_0866 0.87 +0.1 988,694 + Echvi_0866 0.87 -2.5 988,694 + Echvi_0866 0.87 -1.6 988,695 - Echvi_0866 0.88 +1.6 988,695 - Echvi_0866 0.88 -0.4 988,697 - Echvi_0866 0.88 -0.6 988,697 - Echvi_0866 0.88 +0.0 988,704 - Echvi_0866 0.89 -0.1 988,717 + -0.4 988,717 + +0.9 988,718 - -0.7 988,718 - +0.1 988,725 + -0.7
Or see this region's nucleotide sequence