Experiment: m.b. nitrite 30 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0748 and Echvi_0749 are separated by 86 nucleotides Echvi_0749 and Echvi_0750 are separated by 100 nucleotides Echvi_0750 and Echvi_0751 are separated by 115 nucleotides
Echvi_0748: Echvi_0748 - dihydroorotase, multifunctional complex type, at 838,910 to 840,259
_0748
Echvi_0749: Echvi_0749 - tRNA, at 840,346 to 840,422
_0749
Echvi_0750: Echvi_0750 - hypothetical protein, at 840,523 to 840,672
_0750
Echvi_0751: Echvi_0751 - glycogen debranching enzyme, archaeal type, putative, at 840,788 to 842,704
_0751
Position (kb) 840
841 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 840.502 kb on + strand at 840.529 kb on - strand at 840.595 kb on + strand, within Echvi_0750 at 840.595 kb on + strand, within Echvi_0750 at 840.595 kb on + strand, within Echvi_0750 at 840.595 kb on + strand, within Echvi_0750 at 840.596 kb on - strand, within Echvi_0750 at 840.596 kb on - strand, within Echvi_0750 at 840.596 kb on - strand, within Echvi_0750 at 840.671 kb on - strand at 840.674 kb on - strand at 840.737 kb on + strand at 840.794 kb on + strand at 840.833 kb on + strand at 840.878 kb on + strand at 840.879 kb on - strand at 840.897 kb on + strand at 840.897 kb on + strand at 840.897 kb on + strand at 840.904 kb on + strand at 840.905 kb on - strand at 840.905 kb on - strand at 840.905 kb on - strand at 840.905 kb on - strand at 840.905 kb on - strand at 840.969 kb on + strand at 840.969 kb on + strand at 840.969 kb on + strand at 840.969 kb on + strand at 840.969 kb on + strand at 840.969 kb on + strand at 840.969 kb on + strand at 840.969 kb on + strand at 840.969 kb on + strand at 840.970 kb on - strand at 840.970 kb on - strand at 840.970 kb on - strand at 840.970 kb on - strand at 840.970 kb on - strand at 840.970 kb on - strand at 840.973 kb on - strand at 840.973 kb on - strand at 841.034 kb on - strand, within Echvi_0751 at 841.037 kb on + strand, within Echvi_0751 at 841.037 kb on + strand, within Echvi_0751 at 841.050 kb on - strand, within Echvi_0751 at 841.066 kb on + strand, within Echvi_0751 at 841.067 kb on - strand, within Echvi_0751 at 841.277 kb on + strand, within Echvi_0751 at 841.278 kb on - strand, within Echvi_0751 at 841.397 kb on + strand, within Echvi_0751 at 841.397 kb on + strand, within Echvi_0751 at 841.398 kb on - strand, within Echvi_0751 at 841.398 kb on - strand, within Echvi_0751 at 841.401 kb on - strand, within Echvi_0751 at 841.412 kb on + strand, within Echvi_0751 at 841.457 kb on + strand, within Echvi_0751 at 841.458 kb on - strand, within Echvi_0751 at 841.458 kb on - strand, within Echvi_0751 at 841.458 kb on - strand, within Echvi_0751 at 841.630 kb on + strand, within Echvi_0751
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 30 mM remove 840,502 + -0.1 840,529 - +0.7 840,595 + Echvi_0750 0.48 -3.6 840,595 + Echvi_0750 0.48 -4.7 840,595 + Echvi_0750 0.48 -2.9 840,595 + Echvi_0750 0.48 -1.3 840,596 - Echvi_0750 0.49 -0.6 840,596 - Echvi_0750 0.49 -1.2 840,596 - Echvi_0750 0.49 -1.4 840,671 - +2.1 840,674 - +0.6 840,737 + +0.3 840,794 + +0.5 840,833 + +0.3 840,878 + -1.3 840,879 - +0.2 840,897 + -0.8 840,897 + -0.3 840,897 + +0.0 840,904 + +0.9 840,905 - -1.4 840,905 - -0.3 840,905 - -0.9 840,905 - -1.9 840,905 - -2.2 840,969 + +0.3 840,969 + +0.2 840,969 + -1.2 840,969 + +0.3 840,969 + -0.5 840,969 + -0.8 840,969 + -2.4 840,969 + +0.8 840,969 + +1.7 840,970 - -1.1 840,970 - -1.5 840,970 - -0.5 840,970 - +0.4 840,970 - -0.6 840,970 - -1.3 840,973 - +2.0 840,973 - +0.4 841,034 - Echvi_0751 0.13 -1.6 841,037 + Echvi_0751 0.13 -0.3 841,037 + Echvi_0751 0.13 -0.3 841,050 - Echvi_0751 0.14 -1.5 841,066 + Echvi_0751 0.15 +0.4 841,067 - Echvi_0751 0.15 +1.7 841,277 + Echvi_0751 0.26 -0.2 841,278 - Echvi_0751 0.26 -0.8 841,397 + Echvi_0751 0.32 -0.5 841,397 + Echvi_0751 0.32 +0.1 841,398 - Echvi_0751 0.32 +1.0 841,398 - Echvi_0751 0.32 +0.0 841,401 - Echvi_0751 0.32 -1.6 841,412 + Echvi_0751 0.33 +0.6 841,457 + Echvi_0751 0.35 -0.8 841,458 - Echvi_0751 0.35 -0.7 841,458 - Echvi_0751 0.35 -0.2 841,458 - Echvi_0751 0.35 -0.5 841,630 + Echvi_0751 0.44 -1.4
Or see this region's nucleotide sequence