Experiment: m.b. nitrite 30 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0731 and Echvi_0732 are separated by 216 nucleotides Echvi_0732 and Echvi_0733 are separated by 54 nucleotides Echvi_0733 and Echvi_0734 are separated by 353 nucleotides
Echvi_0731: Echvi_0731 - Fe-S oxidoreductase, at 818,650 to 819,444
_0731
Echvi_0732: Echvi_0732 - hypothetical protein, at 819,661 to 820,149
_0732
Echvi_0733: Echvi_0733 - Outer membrane protein and related peptidoglycan-associated (lipo)proteins, at 820,204 to 822,126
_0733
Echvi_0734: Echvi_0734 - Phosphoribosylaminoimidazole (AIR) synthetase, at 822,480 to 823,643
_0734
Position (kb) 820
821
822
823 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 819.457 kb on - strand at 819.457 kb on - strand at 819.473 kb on + strand at 819.534 kb on + strand at 819.534 kb on + strand at 819.534 kb on + strand at 819.587 kb on - strand at 819.587 kb on - strand at 819.625 kb on - strand at 819.626 kb on + strand at 819.627 kb on - strand at 819.630 kb on + strand at 819.660 kb on + strand at 819.660 kb on + strand at 819.664 kb on + strand at 819.664 kb on + strand at 819.664 kb on + strand at 819.664 kb on + strand at 819.664 kb on + strand at 819.664 kb on + strand at 819.664 kb on + strand at 819.664 kb on + strand at 819.664 kb on + strand at 819.664 kb on + strand at 819.665 kb on - strand at 819.665 kb on - strand at 819.665 kb on - strand at 819.666 kb on + strand at 819.707 kb on + strand at 819.707 kb on + strand at 819.708 kb on - strand at 819.708 kb on - strand at 819.708 kb on - strand at 819.708 kb on - strand at 819.709 kb on + strand at 819.709 kb on + strand at 819.709 kb on + strand at 819.709 kb on + strand at 819.751 kb on - strand, within Echvi_0732 at 820.018 kb on + strand, within Echvi_0732 at 820.019 kb on - strand, within Echvi_0732 at 820.060 kb on - strand, within Echvi_0732 at 820.104 kb on - strand at 820.148 kb on - strand at 820.165 kb on + strand at 820.167 kb on + strand at 820.167 kb on + strand at 820.167 kb on + strand at 820.167 kb on + strand at 820.167 kb on + strand at 820.170 kb on + strand at 820.170 kb on + strand at 820.179 kb on + strand at 820.179 kb on + strand at 820.179 kb on + strand at 820.179 kb on + strand at 820.183 kb on + strand at 820.183 kb on + strand at 820.185 kb on + strand at 820.203 kb on + strand at 820.204 kb on - strand at 820.237 kb on - strand at 820.254 kb on - strand at 820.260 kb on + strand at 820.260 kb on + strand at 820.307 kb on - strand at 820.337 kb on + strand at 820.337 kb on + strand at 820.372 kb on + strand at 820.372 kb on + strand at 820.372 kb on + strand at 820.372 kb on + strand at 820.373 kb on - strand at 820.373 kb on - strand at 820.376 kb on - strand at 820.376 kb on - strand at 820.426 kb on + strand, within Echvi_0733 at 820.427 kb on - strand, within Echvi_0733 at 820.429 kb on + strand, within Echvi_0733 at 820.430 kb on - strand, within Echvi_0733 at 820.430 kb on - strand, within Echvi_0733 at 820.430 kb on - strand, within Echvi_0733 at 820.430 kb on - strand, within Echvi_0733 at 820.435 kb on - strand, within Echvi_0733 at 820.435 kb on - strand, within Echvi_0733 at 820.435 kb on - strand, within Echvi_0733 at 820.435 kb on - strand, within Echvi_0733 at 820.507 kb on + strand, within Echvi_0733 at 820.508 kb on - strand, within Echvi_0733 at 820.528 kb on + strand, within Echvi_0733 at 820.528 kb on + strand, within Echvi_0733 at 820.548 kb on + strand, within Echvi_0733 at 820.548 kb on + strand, within Echvi_0733 at 820.548 kb on + strand, within Echvi_0733 at 820.549 kb on - strand, within Echvi_0733 at 820.549 kb on - strand, within Echvi_0733 at 820.549 kb on - strand, within Echvi_0733 at 820.634 kb on - strand, within Echvi_0733 at 820.652 kb on - strand, within Echvi_0733 at 820.681 kb on + strand, within Echvi_0733 at 820.681 kb on + strand, within Echvi_0733 at 820.682 kb on - strand, within Echvi_0733 at 820.682 kb on - strand, within Echvi_0733 at 820.682 kb on - strand, within Echvi_0733 at 820.766 kb on - strand, within Echvi_0733 at 820.806 kb on - strand, within Echvi_0733 at 820.806 kb on - strand, within Echvi_0733 at 820.812 kb on - strand, within Echvi_0733 at 820.820 kb on + strand, within Echvi_0733 at 820.820 kb on + strand, within Echvi_0733 at 820.821 kb on - strand, within Echvi_0733 at 820.821 kb on - strand, within Echvi_0733 at 820.821 kb on - strand, within Echvi_0733 at 820.893 kb on + strand, within Echvi_0733 at 820.894 kb on - strand, within Echvi_0733 at 820.894 kb on - strand, within Echvi_0733 at 820.894 kb on - strand, within Echvi_0733 at 820.903 kb on + strand, within Echvi_0733 at 820.903 kb on + strand, within Echvi_0733 at 820.903 kb on + strand, within Echvi_0733 at 820.903 kb on + strand, within Echvi_0733 at 820.904 kb on - strand, within Echvi_0733 at 820.952 kb on + strand, within Echvi_0733 at 820.953 kb on - strand, within Echvi_0733 at 820.964 kb on - strand, within Echvi_0733 at 820.992 kb on + strand, within Echvi_0733 at 821.006 kb on + strand, within Echvi_0733 at 821.024 kb on - strand, within Echvi_0733 at 821.096 kb on - strand, within Echvi_0733 at 821.113 kb on + strand, within Echvi_0733 at 821.114 kb on - strand, within Echvi_0733 at 821.114 kb on - strand, within Echvi_0733 at 821.114 kb on - strand, within Echvi_0733 at 821.114 kb on - strand, within Echvi_0733 at 821.114 kb on - strand, within Echvi_0733 at 821.223 kb on - strand, within Echvi_0733 at 821.223 kb on - strand, within Echvi_0733 at 821.224 kb on + strand, within Echvi_0733 at 821.225 kb on - strand, within Echvi_0733 at 821.225 kb on - strand, within Echvi_0733 at 821.225 kb on - strand, within Echvi_0733 at 821.425 kb on + strand, within Echvi_0733 at 821.425 kb on + strand, within Echvi_0733 at 821.425 kb on + strand, within Echvi_0733 at 821.429 kb on - strand, within Echvi_0733 at 821.429 kb on - strand, within Echvi_0733 at 821.653 kb on + strand, within Echvi_0733 at 821.688 kb on + strand, within Echvi_0733 at 821.724 kb on + strand, within Echvi_0733 at 821.800 kb on + strand, within Echvi_0733 at 821.800 kb on + strand, within Echvi_0733 at 821.800 kb on + strand, within Echvi_0733 at 821.801 kb on - strand, within Echvi_0733 at 821.801 kb on - strand, within Echvi_0733 at 821.801 kb on - strand, within Echvi_0733 at 821.801 kb on - strand, within Echvi_0733 at 821.801 kb on - strand, within Echvi_0733 at 821.801 kb on - strand, within Echvi_0733 at 821.803 kb on + strand, within Echvi_0733 at 821.804 kb on - strand, within Echvi_0733 at 821.843 kb on + strand, within Echvi_0733 at 821.843 kb on + strand, within Echvi_0733 at 821.853 kb on + strand, within Echvi_0733 at 821.900 kb on + strand, within Echvi_0733 at 821.900 kb on + strand, within Echvi_0733 at 821.935 kb on + strand at 821.936 kb on - strand at 821.936 kb on - strand at 821.940 kb on + strand at 821.941 kb on - strand at 821.976 kb on - strand at 821.980 kb on + strand at 821.980 kb on + strand at 821.980 kb on + strand at 821.981 kb on - strand at 821.981 kb on - strand at 821.981 kb on - strand at 821.981 kb on - strand at 821.981 kb on - strand at 821.981 kb on - strand at 821.982 kb on + strand at 821.983 kb on - strand at 821.983 kb on - strand at 821.983 kb on - strand at 821.983 kb on - strand at 821.997 kb on + strand at 822.094 kb on - strand at 822.103 kb on - strand at 822.158 kb on - strand at 822.160 kb on - strand at 822.160 kb on - strand at 822.160 kb on - strand at 822.164 kb on + strand at 822.165 kb on - strand at 822.243 kb on - strand at 822.243 kb on - strand at 822.256 kb on + strand at 822.294 kb on - strand at 822.301 kb on + strand at 822.301 kb on + strand at 822.302 kb on - strand at 822.395 kb on + strand at 822.395 kb on + strand at 822.396 kb on - strand at 822.423 kb on + strand at 822.426 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 30 mM remove 819,457 - +0.6 819,457 - +1.1 819,473 + -1.8 819,534 + -0.7 819,534 + -0.1 819,534 + +0.3 819,587 - +0.0 819,587 - +0.1 819,625 - +1.9 819,626 + +1.6 819,627 - -0.6 819,630 + -0.4 819,660 + +0.3 819,660 + -0.0 819,664 + +0.3 819,664 + +0.4 819,664 + -0.9 819,664 + +0.4 819,664 + -0.2 819,664 + -1.7 819,664 + +0.0 819,664 + +0.9 819,664 + -0.5 819,664 + +1.0 819,665 - -0.1 819,665 - +0.5 819,665 - +0.1 819,666 + -0.7 819,707 + +0.6 819,707 + -0.5 819,708 - +0.7 819,708 - -1.3 819,708 - +0.2 819,708 - +0.3 819,709 + +0.0 819,709 + -0.3 819,709 + +0.7 819,709 + -1.0 819,751 - Echvi_0732 0.18 -1.2 820,018 + Echvi_0732 0.73 +0.5 820,019 - Echvi_0732 0.73 -1.8 820,060 - Echvi_0732 0.82 -1.0 820,104 - -0.9 820,148 - -1.6 820,165 + +0.8 820,167 + -1.8 820,167 + -0.9 820,167 + +1.7 820,167 + +0.7 820,167 + -0.7 820,170 + -0.8 820,170 + -1.7 820,179 + +0.3 820,179 + -2.4 820,179 + +0.6 820,179 + +0.3 820,183 + -0.5 820,183 + +0.3 820,185 + -1.6 820,203 + -1.2 820,204 - -0.8 820,237 - -0.5 820,254 - +0.1 820,260 + -1.6 820,260 + -0.5 820,307 - +0.8 820,337 + -0.1 820,337 + -0.6 820,372 + -2.1 820,372 + -0.4 820,372 + -0.5 820,372 + +0.1 820,373 - +0.5 820,373 - -0.6 820,376 - +0.4 820,376 - -1.2 820,426 + Echvi_0733 0.12 -0.1 820,427 - Echvi_0733 0.12 -0.9 820,429 + Echvi_0733 0.12 -1.5 820,430 - Echvi_0733 0.12 +0.0 820,430 - Echvi_0733 0.12 -0.1 820,430 - Echvi_0733 0.12 +0.2 820,430 - Echvi_0733 0.12 +0.1 820,435 - Echvi_0733 0.12 +0.1 820,435 - Echvi_0733 0.12 +0.3 820,435 - Echvi_0733 0.12 -0.1 820,435 - Echvi_0733 0.12 -0.2 820,507 + Echvi_0733 0.16 -1.3 820,508 - Echvi_0733 0.16 -2.7 820,528 + Echvi_0733 0.17 -1.0 820,528 + Echvi_0733 0.17 -0.7 820,548 + Echvi_0733 0.18 +0.4 820,548 + Echvi_0733 0.18 -3.2 820,548 + Echvi_0733 0.18 -0.8 820,549 - Echvi_0733 0.18 -0.3 820,549 - Echvi_0733 0.18 -0.6 820,549 - Echvi_0733 0.18 -1.8 820,634 - Echvi_0733 0.22 -0.8 820,652 - Echvi_0733 0.23 -1.5 820,681 + Echvi_0733 0.25 -1.0 820,681 + Echvi_0733 0.25 -3.0 820,682 - Echvi_0733 0.25 +0.3 820,682 - Echvi_0733 0.25 -0.6 820,682 - Echvi_0733 0.25 +0.3 820,766 - Echvi_0733 0.29 -0.8 820,806 - Echvi_0733 0.31 -0.6 820,806 - Echvi_0733 0.31 -1.7 820,812 - Echvi_0733 0.32 -0.7 820,820 + Echvi_0733 0.32 -1.1 820,820 + Echvi_0733 0.32 -1.4 820,821 - Echvi_0733 0.32 +0.1 820,821 - Echvi_0733 0.32 -0.6 820,821 - Echvi_0733 0.32 -2.2 820,893 + Echvi_0733 0.36 -1.1 820,894 - Echvi_0733 0.36 -1.6 820,894 - Echvi_0733 0.36 -1.2 820,894 - Echvi_0733 0.36 +0.5 820,903 + Echvi_0733 0.36 +0.5 820,903 + Echvi_0733 0.36 +0.0 820,903 + Echvi_0733 0.36 +0.0 820,903 + Echvi_0733 0.36 +0.1 820,904 - Echvi_0733 0.36 -0.6 820,952 + Echvi_0733 0.39 -1.0 820,953 - Echvi_0733 0.39 +0.0 820,964 - Echvi_0733 0.40 +0.0 820,992 + Echvi_0733 0.41 -1.4 821,006 + Echvi_0733 0.42 +0.3 821,024 - Echvi_0733 0.43 -1.3 821,096 - Echvi_0733 0.46 -0.0 821,113 + Echvi_0733 0.47 -0.6 821,114 - Echvi_0733 0.47 +0.7 821,114 - Echvi_0733 0.47 +0.8 821,114 - Echvi_0733 0.47 -0.3 821,114 - Echvi_0733 0.47 -0.9 821,114 - Echvi_0733 0.47 -0.0 821,223 - Echvi_0733 0.53 -1.3 821,223 - Echvi_0733 0.53 -1.9 821,224 + Echvi_0733 0.53 -1.4 821,225 - Echvi_0733 0.53 -1.7 821,225 - Echvi_0733 0.53 -1.2 821,225 - Echvi_0733 0.53 -1.7 821,425 + Echvi_0733 0.63 -2.0 821,425 + Echvi_0733 0.63 -1.7 821,425 + Echvi_0733 0.63 -2.1 821,429 - Echvi_0733 0.64 -1.0 821,429 - Echvi_0733 0.64 -0.4 821,653 + Echvi_0733 0.75 +0.3 821,688 + Echvi_0733 0.77 +1.3 821,724 + Echvi_0733 0.79 -0.2 821,800 + Echvi_0733 0.83 -0.6 821,800 + Echvi_0733 0.83 -1.0 821,800 + Echvi_0733 0.83 -3.0 821,801 - Echvi_0733 0.83 -0.8 821,801 - Echvi_0733 0.83 +0.9 821,801 - Echvi_0733 0.83 -0.3 821,801 - Echvi_0733 0.83 -1.3 821,801 - Echvi_0733 0.83 -2.4 821,801 - Echvi_0733 0.83 -1.4 821,803 + Echvi_0733 0.83 -0.9 821,804 - Echvi_0733 0.83 -1.7 821,843 + Echvi_0733 0.85 +0.0 821,843 + Echvi_0733 0.85 -1.5 821,853 + Echvi_0733 0.86 -1.3 821,900 + Echvi_0733 0.88 -0.4 821,900 + Echvi_0733 0.88 -1.4 821,935 + +0.4 821,936 - +0.5 821,936 - -2.0 821,940 + -0.9 821,941 - -1.2 821,976 - -1.8 821,980 + -2.2 821,980 + -0.4 821,980 + -0.7 821,981 - -0.7 821,981 - -1.0 821,981 - -1.3 821,981 - -0.7 821,981 - -1.7 821,981 - -2.3 821,982 + -1.7 821,983 - -2.2 821,983 - -1.2 821,983 - -0.8 821,983 - -0.8 821,997 + -0.4 822,094 - -1.5 822,103 - -0.1 822,158 - +0.9 822,160 - -0.1 822,160 - +0.2 822,160 - +0.4 822,164 + +0.0 822,165 - -0.7 822,243 - +0.0 822,243 - +0.7 822,256 + -0.1 822,294 - -0.1 822,301 + +0.6 822,301 + -0.2 822,302 - +0.4 822,395 + -0.5 822,395 + -0.8 822,396 - +1.1 822,423 + +1.5 822,426 - -0.5
Or see this region's nucleotide sequence